Search of human proteins with 239744927

Search of human proteins with 239744927

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744927 PREDICTED: similar to hCG1645561 [Homo sapiens]
         (41 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756089 PREDICTED: similar to hCG1645561 [Homo sapiens]           85   1e-17
gi|239750620 PREDICTED: similar to hCG1645561 [Homo sapiens]           85   1e-17
gi|239744927 PREDICTED: similar to hCG1645561 [Homo sapiens]           85   1e-17
gi|126723191 dehydrogenase/reductase (SDR family) member 4 like ...    61   2e-10
gi|32483357 peroxisomal short-chain alcohol dehydrogenase [Homo ...    58   1e-09
gi|126723750 dehydrogenase/reductase (SDR family) member 4 like ...    57   3e-09
gi|5031737 dehydrogenase/reductase member 2 isoform 2 [Homo sapi...    57   4e-09
gi|33667109 dehydrogenase/reductase member 2 isoform 1 [Homo sap...    57   4e-09
gi|193804850 dehydrogenase/reductase (SDR family) X-linked [Homo...    27   4.6  
gi|40254986 hydroxysteroid dehydrogenase like 2 [Homo sapiens]         26   7.9  

>gi|239756089 PREDICTED: similar to hCG1645561 [Homo sapiens]
          Length = 41

 Score = 84.7 bits (208), Expect = 1e-17
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 1  MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL 41
          MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL
Sbjct: 1  MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL 41


>gi|239750620 PREDICTED: similar to hCG1645561 [Homo sapiens]
          Length = 41

 Score = 84.7 bits (208), Expect = 1e-17
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 1  MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL 41
          MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL
Sbjct: 1  MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL 41


>gi|239744927 PREDICTED: similar to hCG1645561 [Homo sapiens]
          Length = 41

 Score = 84.7 bits (208), Expect = 1e-17
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 1  MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL 41
          MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL
Sbjct: 1  MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL 41


>gi|126723191 dehydrogenase/reductase (SDR family) member 4 like 2
          [Homo sapiens]
          Length = 232

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 30/41 (73%), Positives = 35/41 (85%)

Query: 1  MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL 41
          ++T ST+  GFAIA+RLA DRAHVV+SS KQQNVD AVATL
Sbjct: 36 LVTASTDGIGFAIARRLAQDRAHVVVSSRKQQNVDQAVATL 76


>gi|32483357 peroxisomal short-chain alcohol dehydrogenase [Homo
          sapiens]
          Length = 278

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 29/41 (70%), Positives = 34/41 (82%)

Query: 1  MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL 41
          ++T ST+  GFAIA+RLA D AHVV+SS KQQNVD AVATL
Sbjct: 36 LVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATL 76


>gi|126723750 dehydrogenase/reductase (SDR family) member 4 like 1
          [Homo sapiens]
          Length = 281

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 1  MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL 41
          ++T ST+  GFA+AQRLA D AHVV+S  KQQNVD AVATL
Sbjct: 36 LVTASTDWIGFAVAQRLAQDGAHVVVSRRKQQNVDQAVATL 76


>gi|5031737 dehydrogenase/reductase member 2 isoform 2 [Homo
          sapiens]
          Length = 280

 Score = 56.6 bits (135), Expect = 4e-09
 Identities = 29/41 (70%), Positives = 34/41 (82%)

Query: 1  MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL 41
          ++TGST+  GFAIA+RLA D AHVVISS KQQNVD A+A L
Sbjct: 40 VVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKL 80


>gi|33667109 dehydrogenase/reductase member 2 isoform 1 [Homo
          sapiens]
          Length = 300

 Score = 56.6 bits (135), Expect = 4e-09
 Identities = 29/41 (70%), Positives = 34/41 (82%)

Query: 1  MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL 41
          ++TGST+  GFAIA+RLA D AHVVISS KQQNVD A+A L
Sbjct: 40 VVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKL 80


>gi|193804850 dehydrogenase/reductase (SDR family) X-linked [Homo
          sapiens]
          Length = 330

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 1  MITGSTNRFGFAIAQRLAHDRAHVVISSGKQQNVDWAVATL 41
          ++TG T+  G++ A+ LA    HV+I+          V+ +
Sbjct: 47 IVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKI 87


>gi|40254986 hydroxysteroid dehydrogenase like 2 [Homo sapiens]
          Length = 418

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 2  ITGSTNRFGFAIAQRLAHDRAHVVISSGKQQ 32
          ITG++   G AIA + A D A++VI++   Q
Sbjct: 15 ITGASRGIGKAIALKAAKDGANIVIAAKTAQ 45


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.130    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,225,050
Number of Sequences: 37866
Number of extensions: 22935
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 10
length of query: 41
length of database: 18,247,518
effective HSP length: 15
effective length of query: 26
effective length of database: 17,679,528
effective search space: 459667728
effective search space used: 459667728
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.