Guide to the Human Genome
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Name: LOC728667 Sequence: fasta or formatted (41aa) NCBI GI: 239750620
Description:

PREDICTED: similar to hCG1645561

Not currently referenced in the text

Other entries for this name:
alt mRNA {41aa} PREDICTED: similar to hCG1645561
alt mRNA {41aa} PREDICTED: similar to hCG1645561
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.6          6           1
 C cysteine            0.0          0           0
 D aspartate           4.9          2           1
 E glutamate           0.0          0           0
 F phenylalanine       4.9          2           1
 G glycine             7.3          3           1
 H histidine           4.9          2           1
 I isoleucine          7.3          3           1
 K lysine              2.4          1           1
 L leucine             4.9          2           1
 M methionine          2.4          1           1
 N asparagine          4.9          2           1
 P proline             0.0          0           0
 Q glutamine           7.3          3           2
 R arginine            7.3          3           1
 S serine              7.3          3           2
 T threonine           7.3          3           1
 V valine              9.8          4           2
 W tryptophan          2.4          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1645561 
LOC728667             1.000   PREDICTED: similar to hCG1645561 
LOC728667             1.000   PREDICTED: similar to hCG1645561 
DHRS4L2               0.600   dehydrogenase/reductase (SDR family) member 4 like ...
DHRS4                 0.550   peroxisomal short-chain alcohol dehydrogenase 
DHRS4L1               0.533   dehydrogenase/reductase (SDR family) member 4 like ...
DHRS2                 0.533   dehydrogenase/reductase member 2 isoform 2 
DHRS2                 0.533   dehydrogenase/reductase member 2 isoform 1 
DHRSX                 0.033   dehydrogenase/reductase (SDR family) X-linked [Homo...
HSDL2                 0.017   hydroxysteroid dehydrogenase like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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