Search of human proteins with 239744438

Search of human proteins with 239744438

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744438 PREDICTED: hypothetical protein XP_002343146 [Homo
sapiens]
         (79 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755621 PREDICTED: hypothetical protein XP_002344643 [Homo ...   157   2e-39
gi|239750130 PREDICTED: hypothetical protein XP_002347283 [Homo ...   157   2e-39
gi|239744438 PREDICTED: hypothetical protein XP_002343146 [Homo ...   157   2e-39
gi|40288201 LysM, putative peptidoglycan-binding, domain contain...    29   0.71 
gi|44890068 zinc finger protein 262 [Homo sapiens]                     26   6.0  

>gi|239755621 PREDICTED: hypothetical protein XP_002344643 [Homo
          sapiens]
          Length = 79

 Score =  157 bits (396), Expect = 2e-39
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MKCSESAKAGLNTAPVRLPPAETKKVMSAASRWIRSLVRTSWKCSRALWKRKEQTASVMT 60
          MKCSESAKAGLNTAPVRLPPAETKKVMSAASRWIRSLVRTSWKCSRALWKRKEQTASVMT
Sbjct: 1  MKCSESAKAGLNTAPVRLPPAETKKVMSAASRWIRSLVRTSWKCSRALWKRKEQTASVMT 60

Query: 61 ALSKSTRMGFLQAKLLSLT 79
          ALSKSTRMGFLQAKLLSLT
Sbjct: 61 ALSKSTRMGFLQAKLLSLT 79


>gi|239750130 PREDICTED: hypothetical protein XP_002347283 [Homo
          sapiens]
          Length = 79

 Score =  157 bits (396), Expect = 2e-39
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MKCSESAKAGLNTAPVRLPPAETKKVMSAASRWIRSLVRTSWKCSRALWKRKEQTASVMT 60
          MKCSESAKAGLNTAPVRLPPAETKKVMSAASRWIRSLVRTSWKCSRALWKRKEQTASVMT
Sbjct: 1  MKCSESAKAGLNTAPVRLPPAETKKVMSAASRWIRSLVRTSWKCSRALWKRKEQTASVMT 60

Query: 61 ALSKSTRMGFLQAKLLSLT 79
          ALSKSTRMGFLQAKLLSLT
Sbjct: 61 ALSKSTRMGFLQAKLLSLT 79


>gi|239744438 PREDICTED: hypothetical protein XP_002343146 [Homo
          sapiens]
          Length = 79

 Score =  157 bits (396), Expect = 2e-39
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MKCSESAKAGLNTAPVRLPPAETKKVMSAASRWIRSLVRTSWKCSRALWKRKEQTASVMT 60
          MKCSESAKAGLNTAPVRLPPAETKKVMSAASRWIRSLVRTSWKCSRALWKRKEQTASVMT
Sbjct: 1  MKCSESAKAGLNTAPVRLPPAETKKVMSAASRWIRSLVRTSWKCSRALWKRKEQTASVMT 60

Query: 61 ALSKSTRMGFLQAKLLSLT 79
          ALSKSTRMGFLQAKLLSLT
Sbjct: 61 ALSKSTRMGFLQAKLLSLT 79


>gi|40288201 LysM, putative peptidoglycan-binding, domain
          containing 4 [Homo sapiens]
          Length = 297

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 13/45 (28%), Positives = 17/45 (37%)

Query: 3  CSESAKAGLNTAPVRLPPAETKKVMSAASRWIRSLVRTSWKCSRA 47
          C   A++        LP  E       +  W R    TSW+CS A
Sbjct: 19 CGPGARSATRAVSTSLPRREQVTWCCCSGSWPRRTASTSWRCSMA 63


>gi|44890068 zinc finger protein 262 [Homo sapiens]
          Length = 1548

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 3   CSESAKAGLNTAPVRLPPAETKKVMSAASR 32
           CS     G    P R PP  TKK  S+ S+
Sbjct: 365 CSTLCLTGYTVPPARPPPPLTKKTCSSCSK 394


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.120    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,427,623
Number of Sequences: 37866
Number of extensions: 61298
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 5
length of query: 79
length of database: 18,247,518
effective HSP length: 51
effective length of query: 28
effective length of database: 16,316,352
effective search space: 456857856
effective search space used: 456857856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.