Search of human proteins with 239744057

Search of human proteins with 239744057

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744057 PREDICTED: PRO1102 [Homo sapiens]
         (153 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239744057 PREDICTED: PRO1102 [Homo sapiens]                        312   6e-86
gi|70610136 poly (ADP-ribose) glycohydrolase [Homo sapiens]           276   4e-75
gi|57165432 zinc finger protein ZNF468 isoform 2 [Homo sapiens]        28   4.0  
gi|38016914 SAM domain- and HD domain-containing protein 1 [Homo...    27   5.2  
gi|38492356 DNA-directed DNA polymerase delta 3 [Homo sapiens]         27   6.8  

>gi|239744057 PREDICTED: PRO1102 [Homo sapiens]
          Length = 153

 Score =  312 bits (800), Expect = 6e-86
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSLEDFPEW 60
           MKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSLEDFPEW
Sbjct: 1   MKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSLEDFPEW 60

Query: 61  ERCEKPLTRLHVTYEGTIEENGRGMLQVDFANHFVGGGVTSAGLVQEEIRFLINPELIIS 120
           ERCEKPLTRLHVTYEGTIEENGRGMLQVDFANHFVGGGVTSAGLVQEEIRFLINPELIIS
Sbjct: 61  ERCEKPLTRLHVTYEGTIEENGRGMLQVDFANHFVGGGVTSAGLVQEEIRFLINPELIIS 120

Query: 121 RLFTEVLDHNECLIITVSEMALDSPFCVLLSGS 153
           RLFTEVLDHNECLIITVSEMALDSPFCVLLSGS
Sbjct: 121 RLFTEVLDHNECLIITVSEMALDSPFCVLLSGS 153


>gi|70610136 poly (ADP-ribose) glycohydrolase [Homo sapiens]
          Length = 976

 Score =  276 bits (707), Expect = 4e-75
 Identities = 135/139 (97%), Positives = 137/139 (98%)

Query: 1   MKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSLEDFPEW 60
           MKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSLEDFPEW
Sbjct: 649 MKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSLEDFPEW 708

Query: 61  ERCEKPLTRLHVTYEGTIEENGRGMLQVDFANHFVGGGVTSAGLVQEEIRFLINPELIIS 120
           ERCEKPLTRLHVTYEGTIEENG+GMLQVDFAN FVGGGVTSAGLVQEEIRFLINPELIIS
Sbjct: 709 ERCEKPLTRLHVTYEGTIEENGQGMLQVDFANRFVGGGVTSAGLVQEEIRFLINPELIIS 768

Query: 121 RLFTEVLDHNECLIITVSE 139
           RLFTEVLDHNECLIIT +E
Sbjct: 769 RLFTEVLDHNECLIITGTE 787


>gi|57165432 zinc finger protein ZNF468 isoform 2 [Homo sapiens]
          Length = 522

 Score = 27.7 bits (60), Expect = 4.0
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 43  PTGLVTFTRQSLEDFPEWERCEKPLTRLHVTYEGTIEENGRGMLQVDFANHFVGGGVTSA 102
           P GL+TF   ++E   E  +C  P  R    Y   + EN R ++ +D ++  +   ++S 
Sbjct: 4   PQGLLTFRDVAIEFSQEEWKCLDPAQR--TLYRDVMLENYRNLVSLDISSKCMLKTLSST 61

Query: 103 GLVQEEI 109
           G    E+
Sbjct: 62  GQGNTEV 68


>gi|38016914 SAM domain- and HD domain-containing protein 1 [Homo
           sapiens]
          Length = 626

 Score = 27.3 bits (59), Expect = 5.2
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 15  RLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSLEDFPEWERCEKPLTRLHV 72
           +L + R   K  + + LF Y   V E +PTG +   R+  E  P+     KP   L V
Sbjct: 437 KLKDAREILKQIEYRNLFKY---VGETQPTGQIKIKREDYESLPKEVASAKPKVLLDV 491


>gi|38492356 DNA-directed DNA polymerase delta 3 [Homo sapiens]
          Length = 466

 Score = 26.9 bits (58), Expect = 6.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 47 VTFTRQSLEDFPEWERCEKPLTRLHVTY--EGTIEENGRGMLQV 88
          V   +Q L D+ E +R E    +LHVTY   G++ +NG    +V
Sbjct: 34 VNQAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKV 77


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,677,246
Number of Sequences: 37866
Number of extensions: 230541
Number of successful extensions: 390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 5
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.