Search of human proteins with 239743499

Search of human proteins with 239743499

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743499 PREDICTED: hypothetical protein XP_002342866 [Homo
sapiens]
         (82 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239743499 PREDICTED: hypothetical protein XP_002342866 [Homo ...   172   5e-44
gi|169172807 PREDICTED: hypothetical protein [Homo sapiens]           144   2e-35
gi|239752480 PREDICTED: hypothetical protein XP_002348290 [Homo ...   138   1e-33
gi|30181233 leucine-rich repeats and calponin homology (CH) doma...    29   0.71 
gi|67972429 phospholipase A2, group IVF [Homo sapiens]                 28   1.2  
gi|6005715 solute carrier family 6 (amino acid transporter), mem...    28   1.6  
gi|51242941 G6f protein [Homo sapiens]                                 26   6.0  

>gi|239743499 PREDICTED: hypothetical protein XP_002342866 [Homo
          sapiens]
          Length = 82

 Score =  172 bits (436), Expect = 5e-44
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 1  MIQVGRPADDPLWPFSELSGHIVSFHPLWFLVVLLLLLSEEQRVDLIDSGYGYFVGDLDN 60
          MIQVGRPADDPLWPFSELSGHIVSFHPLWFLVVLLLLLSEEQRVDLIDSGYGYFVGDLDN
Sbjct: 1  MIQVGRPADDPLWPFSELSGHIVSFHPLWFLVVLLLLLSEEQRVDLIDSGYGYFVGDLDN 60

Query: 61 QDNDPQKRRKGSSHLVCLSKSR 82
          QDNDPQKRRKGSSHLVCLSKSR
Sbjct: 61 QDNDPQKRRKGSSHLVCLSKSR 82


>gi|169172807 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 277

 Score =  144 bits (362), Expect = 2e-35
 Identities = 69/78 (88%), Positives = 72/78 (92%)

Query: 4   VGRPADDPLWPFSELSGHIVSFHPLWFLVVLLLLLSEEQRVDLIDSGYGYFVGDLDNQDN 63
           V RPADDPLWPFSELS HIVSFH LWFL+VLLLLLSEEQRVDLI SGYGYF+GDLDNQDN
Sbjct: 199 VRRPADDPLWPFSELSCHIVSFHTLWFLMVLLLLLSEEQRVDLIHSGYGYFLGDLDNQDN 258

Query: 64  DPQKRRKGSSHLVCLSKS 81
           DPQ+RRKGSS LVCL KS
Sbjct: 259 DPQQRRKGSSQLVCLRKS 276


>gi|239752480 PREDICTED: hypothetical protein XP_002348290 [Homo
           sapiens]
          Length = 251

 Score =  138 bits (347), Expect = 1e-33
 Identities = 65/74 (87%), Positives = 69/74 (93%)

Query: 5   GRPADDPLWPFSELSGHIVSFHPLWFLVVLLLLLSEEQRVDLIDSGYGYFVGDLDNQDND 64
           GRPA D LWPFSELSGHIVSFH LWF+VVLLLLLSEEQRVDLIDSGYGYF+GDLDNQDND
Sbjct: 79  GRPAYDSLWPFSELSGHIVSFHALWFIVVLLLLLSEEQRVDLIDSGYGYFLGDLDNQDND 138

Query: 65  PQKRRKGSSHLVCL 78
           PQ+RRKGSSH + L
Sbjct: 139 PQQRRKGSSHSLLL 152


>gi|30181233 leucine-rich repeats and calponin homology (CH) domain
           containing 4 [Homo sapiens]
          Length = 683

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 6/36 (16%)

Query: 3   QVGRPADDPLWPFSELSGHIVSFHPLWFLVVLLLLL 38
           +VG  A  PLWP S L G +V      F VVL+LLL
Sbjct: 644 RVGGKALPPLWPPSGLGGFVV------FYVVLMLLL 673


>gi|67972429 phospholipase A2, group IVF [Homo sapiens]
          Length = 849

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/32 (50%), Positives = 17/32 (53%)

Query: 17  ELSGHIVSFHPLWFLVVLLLLLSEEQRVDLID 48
           E SGH VS   LW L+V  LL  EE    L D
Sbjct: 450 ERSGHSVSLIDLWGLLVEYLLYQEENPAKLSD 481


>gi|6005715 solute carrier family 6 (amino acid transporter), member
           14 [Homo sapiens]
          Length = 642

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 19  SGHIVSFHPLWFLVVLLLLLSEEQRVDLIDSGYGYFVGDLDN 60
           SG +V F  L+  VVLL+LL     ++    G  Y++G   N
Sbjct: 261 SGKVVYFTALFPYVVLLILLVRGATLEGASKGISYYIGAQSN 302


>gi|51242941 G6f protein [Homo sapiens]
          Length = 297

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 2  IQVGRPADDPLWPFSELSGHIVSFHPLW 29
          +QVGRPA DP  P  E    ++  + LW
Sbjct: 65 VQVGRPAPDPGKPGRESRLRLLGNYSLW 92


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.142    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,370,992
Number of Sequences: 37866
Number of extensions: 115979
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 7
length of query: 82
length of database: 18,247,518
effective HSP length: 54
effective length of query: 28
effective length of database: 16,202,754
effective search space: 453677112
effective search space used: 453677112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.