Search of human proteins with 239742078

Search of human proteins with 239742078

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742078 PREDICTED: transmembrane protein 30C [Homo
sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753641 PREDICTED: transmembrane protein 30C [Homo sapiens]      231   1e-61
gi|239748184 PREDICTED: transmembrane protein 30C [Homo sapiens]      231   1e-61
gi|239742078 PREDICTED: transmembrane protein 30C [Homo sapiens]      231   1e-61
gi|8922720 transmembrane protein 30A isoform 1 [Homo sapiens]          47   3e-06
gi|221139888 transmembrane protein 30A isoform 2 [Homo sapiens]        41   2e-04
gi|63003930 transmembrane protein 30B [Homo sapiens]                   39   9e-04
gi|239582753 MAS-related GPR, member X4 [Homo sapiens]                 27   4.6  
gi|112789550 poly (ADP-ribose) polymerase family, member 4 [Homo...    27   4.6  

>gi|239753641 PREDICTED: transmembrane protein 30C [Homo sapiens]
          Length = 113

 Score =  231 bits (588), Expect = 1e-61
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MEERAQHCLSRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARST 60
           MEERAQHCLSRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARST
Sbjct: 1   MEERAQHCLSRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARST 60

Query: 61  QEIEINYTRICANCAKLRENASNFDKECTCSIPFYLSGKMMVGEIQETRLTLH 113
           QEIEINYTRICANCAKLRENASNFDKECTCSIPFYLSGKMMVGEIQETRLTLH
Sbjct: 61  QEIEINYTRICANCAKLRENASNFDKECTCSIPFYLSGKMMVGEIQETRLTLH 113


>gi|239748184 PREDICTED: transmembrane protein 30C [Homo sapiens]
          Length = 113

 Score =  231 bits (588), Expect = 1e-61
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MEERAQHCLSRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARST 60
           MEERAQHCLSRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARST
Sbjct: 1   MEERAQHCLSRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARST 60

Query: 61  QEIEINYTRICANCAKLRENASNFDKECTCSIPFYLSGKMMVGEIQETRLTLH 113
           QEIEINYTRICANCAKLRENASNFDKECTCSIPFYLSGKMMVGEIQETRLTLH
Sbjct: 61  QEIEINYTRICANCAKLRENASNFDKECTCSIPFYLSGKMMVGEIQETRLTLH 113


>gi|239742078 PREDICTED: transmembrane protein 30C [Homo sapiens]
          Length = 113

 Score =  231 bits (588), Expect = 1e-61
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MEERAQHCLSRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARST 60
           MEERAQHCLSRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARST
Sbjct: 1   MEERAQHCLSRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARST 60

Query: 61  QEIEINYTRICANCAKLRENASNFDKECTCSIPFYLSGKMMVGEIQETRLTLH 113
           QEIEINYTRICANCAKLRENASNFDKECTCSIPFYLSGKMMVGEIQETRLTLH
Sbjct: 61  QEIEINYTRICANCAKLRENASNFDKECTCSIPFYLSGKMMVGEIQETRLTLH 113


>gi|8922720 transmembrane protein 30A isoform 1 [Homo sapiens]
          Length = 361

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query: 10 SRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARSTQEIEINYT 68
          +R  DN+A KQQ LP  +   TA  VL +FF  G+  + +GI + +++ + +EIEI+YT
Sbjct: 25 TRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEIDYT 83


>gi|221139888 transmembrane protein 30A isoform 2 [Homo sapiens]
          Length = 325

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 10 SRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARSTQEIEIN 66
          +R  DN+A KQQ LP  +   TA  VL +FF  G+  + +GI + +++ + +EIE N
Sbjct: 25 TRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEGN 81


>gi|63003930 transmembrane protein 30B [Homo sapiens]
          Length = 351

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 14  DNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARSTQEIEINY-----T 68
           DN+A  QQ LP  +   +A   L +FF  G+  + +G+ L  S+   +E+E +Y     T
Sbjct: 14  DNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTGDPGT 73

Query: 69  RICANCAKLRENASNFDKECTCSIPFYL 96
             C+ CA   +  +     C+C+  F L
Sbjct: 74  GNCSVCAAAGQGRA-LPPPCSCAWYFSL 100


>gi|239582753 MAS-related GPR, member X4 [Homo sapiens]
          Length = 322

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 21  QELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARSTQEIEINYTRICANCAKL 77
           +++P+ RLY T    + VF   G   L  GI+  L  R    +E+ Y  +   C  L
Sbjct: 207 RKMPLTRLYVTILLTVLVFLLCG---LPFGILGALIYRMHLNLEVLYCHVYLVCMSL 260


>gi|112789550 poly (ADP-ribose) polymerase family, member 4 [Homo
           sapiens]
          Length = 1724

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 85  DKECTCSIPFYLSGKMMVGEIQE 107
           DK   C    +++GK +VGEI+E
Sbjct: 663 DKAAVCGFEAFINGKHIVGEIKE 685


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,667,308
Number of Sequences: 37866
Number of extensions: 121727
Number of successful extensions: 395
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 8
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.