Search of human proteins with 239741010

Search of human proteins with 239741010

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741010 PREDICTED: hypothetical protein XP_002342053 [Homo
sapiens]
         (131 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752668 PREDICTED: hypothetical protein [Homo sapiens]           273   2e-74
gi|239741010 PREDICTED: hypothetical protein XP_002342053 [Homo ...   273   2e-74
gi|239752789 PREDICTED: similar to ATPase, H+ transporting, lyso...    32   0.19 
gi|239747332 PREDICTED: hypothetical protein XP_002346425 [Homo ...    32   0.19 
gi|239741157 PREDICTED: hypothetical protein XP_002342123 [Homo ...    32   0.19 
gi|222446609 rai-like protein [Homo sapiens]                           29   0.92 
gi|117938328 l(3)mbt-like isoform I [Homo sapiens]                     28   2.7  
gi|117938330 l(3)mbt-like isoform II [Homo sapiens]                    28   2.7  
gi|31881740 solute carrier family 12 (potassium/chloride transpo...    27   3.5  
gi|31542723 spermatogenesis associated 20 [Homo sapiens]               26   7.8  

>gi|239752668 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score =  273 bits (699), Expect = 2e-74
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MVGRPFQLVPLQPQETALLRNHQQMHRGGWCLKTDRVTSLGCQRHRKPGASGPGSSVTLQ 60
           MVGRPFQLVPLQPQETALLRNHQQMHRGGWCLKTDRVTSLGCQRHRKPGASGPGSSVTLQ
Sbjct: 1   MVGRPFQLVPLQPQETALLRNHQQMHRGGWCLKTDRVTSLGCQRHRKPGASGPGSSVTLQ 60

Query: 61  RLPHRLLFAKWYQDFLIVVSKRVGFLTSHRPWLEVKSMFKLAGNKRLLSCMARCAIRFLC 120
           RLPHRLLFAKWYQDFLIVVSKRVGFLTSHRPWLEVKSMFKLAGNKRLLSCMARCAIRFLC
Sbjct: 61  RLPHRLLFAKWYQDFLIVVSKRVGFLTSHRPWLEVKSMFKLAGNKRLLSCMARCAIRFLC 120

Query: 121 VILFTIFRIAF 131
           VILFTIFRIAF
Sbjct: 121 VILFTIFRIAF 131


>gi|239741010 PREDICTED: hypothetical protein XP_002342053 [Homo
           sapiens]
          Length = 131

 Score =  273 bits (699), Expect = 2e-74
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MVGRPFQLVPLQPQETALLRNHQQMHRGGWCLKTDRVTSLGCQRHRKPGASGPGSSVTLQ 60
           MVGRPFQLVPLQPQETALLRNHQQMHRGGWCLKTDRVTSLGCQRHRKPGASGPGSSVTLQ
Sbjct: 1   MVGRPFQLVPLQPQETALLRNHQQMHRGGWCLKTDRVTSLGCQRHRKPGASGPGSSVTLQ 60

Query: 61  RLPHRLLFAKWYQDFLIVVSKRVGFLTSHRPWLEVKSMFKLAGNKRLLSCMARCAIRFLC 120
           RLPHRLLFAKWYQDFLIVVSKRVGFLTSHRPWLEVKSMFKLAGNKRLLSCMARCAIRFLC
Sbjct: 61  RLPHRLLFAKWYQDFLIVVSKRVGFLTSHRPWLEVKSMFKLAGNKRLLSCMARCAIRFLC 120

Query: 121 VILFTIFRIAF 131
           VILFTIFRIAF
Sbjct: 121 VILFTIFRIAF 131


>gi|239752789 PREDICTED: similar to ATPase, H+ transporting,
           lysosomal 9kDa, V0 subunit e1 [Homo sapiens]
          Length = 191

 Score = 31.6 bits (70), Expect = 0.19
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 76  LIVVSKRVGFLTSHRPWLEVKSMFKLAGNKRLLSCMARCAIRFLCVILF 124
           LIV+S   GFL+   PW   KS+ ++     L++C   C + +L  ILF
Sbjct: 120 LIVISMFWGFLSFLVPWFIPKSLSRVVIITILVTCSVCCYLFWLVAILF 168


>gi|239747332 PREDICTED: hypothetical protein XP_002346425 [Homo
           sapiens]
          Length = 191

 Score = 31.6 bits (70), Expect = 0.19
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 76  LIVVSKRVGFLTSHRPWLEVKSMFKLAGNKRLLSCMARCAIRFLCVILF 124
           LIV+S   GFL+   PW   KS+ ++     L++C   C + +L  ILF
Sbjct: 120 LIVISMFWGFLSFLVPWFIPKSLSRVVIITILVTCSVCCYLFWLVAILF 168


>gi|239741157 PREDICTED: hypothetical protein XP_002342123 [Homo
           sapiens]
          Length = 191

 Score = 31.6 bits (70), Expect = 0.19
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 76  LIVVSKRVGFLTSHRPWLEVKSMFKLAGNKRLLSCMARCAIRFLCVILF 124
           LIV+S   GFL+   PW   KS+ ++     L++C   C + +L  ILF
Sbjct: 120 LIVISMFWGFLSFLVPWFIPKSLSRVVIITILVTCSVCCYLFWLVAILF 168


>gi|222446609 rai-like protein [Homo sapiens]
          Length = 630

 Score = 29.3 bits (64), Expect = 0.92
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 30  WCLKTDRVTSLGCQRHRKPGASGPGSSVT 58
           +CL T  V  L  Q  R PG+SGP S  T
Sbjct: 107 FCLGTKEVPRLKLQESRDPGSSGPSSPET 135


>gi|117938328 l(3)mbt-like isoform I [Homo sapiens]
          Length = 772

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 21  NHQQMHRGGWCLKTDRVTS--LGCQRHRKPGASGPGS--SVTLQRLPH 64
           +H  +H  GWC KT       LG    R+P ++ PG    ++ + LPH
Sbjct: 497 DHPDIHPAGWCSKTGHPLQPPLG---PREPSSASPGGCPPLSYRSLPH 541


>gi|117938330 l(3)mbt-like isoform II [Homo sapiens]
          Length = 738

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 21  NHQQMHRGGWCLKTDRVTS--LGCQRHRKPGASGPGS--SVTLQRLPH 64
           +H  +H  GWC KT       LG    R+P ++ PG    ++ + LPH
Sbjct: 497 DHPDIHPAGWCSKTGHPLQPPLG---PREPSSASPGGCPPLSYRSLPH 541


>gi|31881740 solute carrier family 12 (potassium/chloride
           transporters), member 9 [Homo sapiens]
          Length = 914

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 49  GASGPGSSVTLQRLPHRL--LFAKWYQDFLIVVSKRVGFLTSHRPWLEVKSMFKLAGNKR 106
           GA GPG + + ++L   L  +       F IVV  R+GF+  H   L+  +M  +A    
Sbjct: 25  GAGGPGGA-SARKLSTFLGVVVPTVLSMFSIVVFLRIGFVVGHAGLLQALAMLLVAYFIL 83

Query: 107 LLSCMARCAI 116
            L+ ++ CAI
Sbjct: 84  ALTVLSVCAI 93


>gi|31542723 spermatogenesis associated 20 [Homo sapiens]
          Length = 802

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 22 HQQMHRGGWCLKTDRVTSLGCQRHRKPGASGPGSSVTLQRLPHRLLFAK 70
          H+   RG      DR  ++        G  G   S T QR+P+RL+  K
Sbjct: 37 HRSPSRGSSSRDKDRSATVSSSVPMPAGGKGSHPSSTPQRVPNRLIHEK 85


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.332    0.142    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,237,076
Number of Sequences: 37866
Number of extensions: 214538
Number of successful extensions: 630
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 622
Number of HSP's gapped (non-prelim): 10
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.