Search of human proteins with 116008154

Search of human proteins with 116008154

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116008154 hypothetical protein LOC201229 [Homo sapiens]
         (78 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116008154 hypothetical protein LOC201229 [Homo sapiens]            165   6e-42
gi|38570054 LYR motif containing 4 [Homo sapiens]                      29   0.71 
gi|10092689 LYR motif containing 2 [Homo sapiens]                      28   1.2  
gi|115430112 receptor accessory protein 5 [Homo sapiens]               28   1.6  
gi|115430227 LYR motif containing 5 [Homo sapiens]                     27   2.7  
gi|38176287 branched chain aminotransferase 1, cytosolic [Homo s...    27   3.5  
gi|148368962 NKF3 kinase family member [Homo sapiens]                  26   6.0  

>gi|116008154 hypothetical protein LOC201229 [Homo sapiens]
          Length = 78

 Score =  165 bits (418), Expect = 6e-42
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MAPLPGAELVRRPLQLYRYLLRCCQQLPTKGIQQHYKHAVRQSFRVHSDEDNPERIQQII 60
          MAPLPGAELVRRPLQLYRYLLRCCQQLPTKGIQQHYKHAVRQSFRVHSDEDNPERIQQII
Sbjct: 1  MAPLPGAELVRRPLQLYRYLLRCCQQLPTKGIQQHYKHAVRQSFRVHSDEDNPERIQQII 60

Query: 61 KRAIEDADWIMNKYKKQN 78
          KRAIEDADWIMNKYKKQN
Sbjct: 61 KRAIEDADWIMNKYKKQN 78


>gi|38570054 LYR motif containing 4 [Homo sapiens]
          Length = 91

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 14 LQLYRYLLRCCQQLPTKGIQQHYKHAVRQSFRVHSDEDNPERIQQIIKRAIED 66
          L LYR +LR  ++      + +    +R +FR + +  +P  IQ ++ +A  D
Sbjct: 10 LSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRD 62


>gi|10092689 LYR motif containing 2 [Homo sapiens]
          Length = 88

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 2  APLPGAELVRRP--LQLYRYLLRCCQQLPTKGIQQHYKHAVRQSFRVHSDEDNPERIQQI 59
          A L   + VRR   L LYR +L+  +Q+P    +++ K   R+ FR +      + I+ +
Sbjct: 9  ATLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSATEEDTIRMM 68

Query: 60 I 60
          I
Sbjct: 69 I 69


>gi|115430112 receptor accessory protein 5 [Homo sapiens]
          Length = 189

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 19  YLLRCCQQLPTKGIQQHYKHAVRQSFRVHSDEDNPERIQQIIKRAIEDADWIMNKYKK 76
           +LL C    P+ G +  YK  +R  F  H  + +   ++ +  +A E AD I  + KK
Sbjct: 120 FLLWCMAPSPSNGAELLYKRIIRPFFLKHESQMD-SVVKDLKDKAKETADAITKEAKK 176


>gi|115430227 LYR motif containing 5 [Homo sapiens]
          Length = 90

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 14 LQLYRYLLRCCQQLPTKGIQQHYKHAVRQSFRVHSDEDNPERIQQII 60
          L+LY+ LL   +  P KG   ++K  ++  F  + D  NPE+I+++I
Sbjct: 12 LKLYKNLLYLGRDYP-KGAD-YFKKRLKNIFLKNKDVKNPEKIKELI 56


>gi|38176287 branched chain aminotransferase 1, cytosolic [Homo
           sapiens]
          Length = 386

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 28  PTKGIQQHYKHAVRQSFRVHSDEDNPERIQQIIKRAIEDADWI 70
           P   + + Y+ AVR +  V   E+  E IQQ++K    D +W+
Sbjct: 113 PNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKL---DQEWV 152


>gi|148368962 NKF3 kinase family member [Homo sapiens]
          Length = 1746

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 21/73 (28%)

Query: 16   LYRYLLRCCQQLPTKGIQQHYKHAVRQSFRVH---------------------SDEDNPE 54
            L  Y ++ C+    +  Q ++  AVRQS  VH                      D D+PE
Sbjct: 1353 LNNYAVKICKSKAKESQQYYHSLAVRQSLAVHFNIQQDCGHFLAEVPNRLLPWEDPDDPE 1412

Query: 55   RIQQIIKRAIEDA 67
            + +  ++   EDA
Sbjct: 1413 KDEDDMEETEEDA 1425


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,214,249
Number of Sequences: 37866
Number of extensions: 115937
Number of successful extensions: 293
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 7
length of query: 78
length of database: 18,247,518
effective HSP length: 50
effective length of query: 28
effective length of database: 16,354,218
effective search space: 457918104
effective search space used: 457918104
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.