Search of human proteins with 115527068

Search of human proteins with 115527068

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|115527068 cytochrome c oxidase subunit VIIb2 [Homo sapiens]
         (81 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|115527068 cytochrome c oxidase subunit VIIb2 [Homo sapiens]        171   1e-43
gi|4502991 cytochrome c oxidase subunit VIIb precursor [Homo sap...   130   2e-31
gi|239747330 PREDICTED: similar to cytochrome c oxidase subunit ...   127   2e-30
gi|239741155 PREDICTED: similar to cytochrome c oxidase subunit ...   127   2e-30
gi|239752959 PREDICTED: similar to cytochrome c oxidase subunit ...   101   1e-22
gi|239747504 PREDICTED: hypothetical protein XP_002347657 [Homo ...   101   1e-22
gi|239741382 PREDICTED: hypothetical protein XP_002342160 [Homo ...   101   1e-22
gi|134948605 ankyrin repeat domain 12 isoform 2 [Homo sapiens]         26   6.0  
gi|134948558 ankyrin repeat domain 12 isoform 1 [Homo sapiens]         26   6.0  

>gi|115527068 cytochrome c oxidase subunit VIIb2 [Homo sapiens]
          Length = 81

 Score =  171 bits (433), Expect = 1e-43
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 1  MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ 60
          MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
Sbjct: 1  MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ 60

Query: 61 IGIEWNLSPVGRVTPKEWKHQ 81
          IGIEWNLSPVGRVTPKEWKHQ
Sbjct: 61 IGIEWNLSPVGRVTPKEWKHQ 81


>gi|4502991 cytochrome c oxidase subunit VIIb precursor [Homo
          sapiens]
          Length = 80

 Score =  130 bits (328), Expect = 2e-31
 Identities = 56/80 (70%), Positives = 69/80 (86%)

Query: 2  MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQI 61
          MFPL ++AL+ L+++SI Q+MAR SH K +PDFHDKYGNAVLASG  FC+ TW + ATQ+
Sbjct: 1  MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV 60

Query: 62 GIEWNLSPVGRVTPKEWKHQ 81
          GIEWNLSPVGRVTPKEW++Q
Sbjct: 61 GIEWNLSPVGRVTPKEWRNQ 80


>gi|239747330 PREDICTED: similar to cytochrome c oxidase subunit
          VIIb [Homo sapiens]
          Length = 80

 Score =  127 bits (319), Expect = 2e-30
 Identities = 57/80 (71%), Positives = 65/80 (81%)

Query: 2  MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQI 61
          MFPL  N LS L++QSILQ++AR SH KH+PDFHDKY NAVLASG  F +A W + ATQI
Sbjct: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60

Query: 62 GIEWNLSPVGRVTPKEWKHQ 81
          GIEWNLSP GRVTPKEW+ Q
Sbjct: 61 GIEWNLSPDGRVTPKEWRDQ 80


>gi|239741155 PREDICTED: similar to cytochrome c oxidase subunit
          VIIb [Homo sapiens]
          Length = 80

 Score =  127 bits (319), Expect = 2e-30
 Identities = 57/80 (71%), Positives = 65/80 (81%)

Query: 2  MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQI 61
          MFPL  N LS L++QSILQ++AR SH KH+PDFHDKY NAVLASG  F +A W + ATQI
Sbjct: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60

Query: 62 GIEWNLSPVGRVTPKEWKHQ 81
          GIEWNLSP GRVTPKEW+ Q
Sbjct: 61 GIEWNLSPDGRVTPKEWRDQ 80


>gi|239752959 PREDICTED: similar to cytochrome c oxidase subunit
          VIIb [Homo sapiens]
          Length = 80

 Score =  101 bits (252), Expect = 1e-22
 Identities = 49/80 (61%), Positives = 58/80 (72%)

Query: 2  MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQI 61
          MFPL +N+LS L + SI Q+MAR SH K   DFHDK GNAVLASG   C+A W + ATQI
Sbjct: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60

Query: 62 GIEWNLSPVGRVTPKEWKHQ 81
           I+ NLS VGRVT K+W+ Q
Sbjct: 61 TIKGNLSTVGRVTLKKWRDQ 80


>gi|239747504 PREDICTED: hypothetical protein XP_002347657 [Homo
          sapiens]
          Length = 80

 Score =  101 bits (252), Expect = 1e-22
 Identities = 49/80 (61%), Positives = 58/80 (72%)

Query: 2  MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQI 61
          MFPL +N+LS L + SI Q+MAR SH K   DFHDK GNAVLASG   C+A W + ATQI
Sbjct: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60

Query: 62 GIEWNLSPVGRVTPKEWKHQ 81
           I+ NLS VGRVT K+W+ Q
Sbjct: 61 TIKGNLSTVGRVTLKKWRDQ 80


>gi|239741382 PREDICTED: hypothetical protein XP_002342160 [Homo
          sapiens]
          Length = 80

 Score =  101 bits (252), Expect = 1e-22
 Identities = 49/80 (61%), Positives = 58/80 (72%)

Query: 2  MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQI 61
          MFPL +N+LS L + SI Q+MAR SH K   DFHDK GNAVLASG   C+A W + ATQI
Sbjct: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60

Query: 62 GIEWNLSPVGRVTPKEWKHQ 81
           I+ NLS VGRVT K+W+ Q
Sbjct: 61 TIKGNLSTVGRVTLKKWRDQ 80


>gi|134948605 ankyrin repeat domain 12 isoform 2 [Homo sapiens]
          Length = 2039

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 16   QSILQSMARHSHVKHSPDFHDKYGNAV 42
            QSIL S+  HS     P+ H KYG  V
Sbjct: 1666 QSILSSLENHSQQSTQPEMH-KYGQLV 1691


>gi|134948558 ankyrin repeat domain 12 isoform 1 [Homo sapiens]
          Length = 2062

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 16   QSILQSMARHSHVKHSPDFHDKYGNAV 42
            QSIL S+  HS     P+ H KYG  V
Sbjct: 1689 QSILSSLENHSQQSTQPEMH-KYGQLV 1714


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.130    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,994,844
Number of Sequences: 37866
Number of extensions: 92981
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 9
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.