Search of human proteins with 224586838

Search of human proteins with 224586838

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224586838 cortexin 2 [Homo sapiens]
         (81 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|224586838 cortexin 2 [Homo sapiens]                                164   1e-41
gi|188497722 cortexin 3 [Homo sapiens]                                 85   1e-17
gi|115392142 cortexin 3 [Homo sapiens]                                 85   1e-17
gi|45592954 cortexin 1 [Homo sapiens]                                  69   8e-13
gi|148806904 stromal antigen 3-like 4 [Homo sapiens]                   28   2.1  
gi|157384977 glutamate receptor, ionotropic, delta 2 [Homo sapiens]    26   7.8  

>gi|224586838 cortexin 2 [Homo sapiens]
          Length = 81

 Score =  164 bits (416), Expect = 1e-41
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 1  MSSTYCGNSSAKMSVNEVSAFSLTLEQKTGFAFVGILCIFLGLLIIRCFKILLDPYSSMP 60
          MSSTYCGNSSAKMSVNEVSAFSLTLEQKTGFAFVGILCIFLGLLIIRCFKILLDPYSSMP
Sbjct: 1  MSSTYCGNSSAKMSVNEVSAFSLTLEQKTGFAFVGILCIFLGLLIIRCFKILLDPYSSMP 60

Query: 61 SSTWEDEVEEFDKGTFEYALA 81
          SSTWEDEVEEFDKGTFEYALA
Sbjct: 61 SSTWEDEVEEFDKGTFEYALA 81


>gi|188497722 cortexin 3 [Homo sapiens]
          Length = 81

 Score = 85.1 bits (209), Expect = 1e-17
 Identities = 40/66 (60%), Positives = 52/66 (78%)

Query: 16 NEVSAFSLTLEQKTGFAFVGILCIFLGLLIIRCFKILLDPYSSMPSSTWEDEVEEFDKGT 75
          NE +  S++LEQK  F FV +L IFLG+LI+RCF+ILLDPY SMP+STW D +E  +KG 
Sbjct: 16 NESADSSMSLEQKMTFVFVILLFIFLGILIVRCFRILLDPYRSMPTSTWADGLEGLEKGQ 75

Query: 76 FEYALA 81
          F++ALA
Sbjct: 76 FDHALA 81


>gi|115392142 cortexin 3 [Homo sapiens]
          Length = 81

 Score = 85.1 bits (209), Expect = 1e-17
 Identities = 40/66 (60%), Positives = 52/66 (78%)

Query: 16 NEVSAFSLTLEQKTGFAFVGILCIFLGLLIIRCFKILLDPYSSMPSSTWEDEVEEFDKGT 75
          NE +  S++LEQK  F FV +L IFLG+LI+RCF+ILLDPY SMP+STW D +E  +KG 
Sbjct: 16 NESADSSMSLEQKMTFVFVILLFIFLGILIVRCFRILLDPYRSMPTSTWADGLEGLEKGQ 75

Query: 76 FEYALA 81
          F++ALA
Sbjct: 76 FDHALA 81


>gi|45592954 cortexin 1 [Homo sapiens]
          Length = 82

 Score = 68.9 bits (167), Expect = 8e-13
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query: 23 LTLEQKTGFAFVGILCIFLGLLIIRCFKILLDPYSSMPSSTWEDEVEEFDKGTFEYAL 80
          L  EQ+T FAFV  L + L LL++RC +ILLDPYS MP+S+W D  E  ++G F+YAL
Sbjct: 24 LDAEQRTVFAFVLCLLVVLVLLMVRCVRILLDPYSRMPASSWTDHKEALERGQFDYAL 81


>gi|148806904 stromal antigen 3-like 4 [Homo sapiens]
          Length = 150

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)

Query: 9  SSAKMSVNEVSAFSLTLEQKTGFAFVGILCIFLGLLIIRCFKILL 53
          SS  + V +   + LT    +   F G  C F+G L+ RC  ILL
Sbjct: 22 SSDLVDVKDSGDYPLTAPGLSWKKFQGSFCEFVGTLVCRCQYILL 66


>gi|157384977 glutamate receptor, ionotropic, delta 2 [Homo sapiens]
          Length = 1007

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 10/58 (17%)

Query: 22  SLTLEQKTGF----AFVGILCIFLGLLIIRCFKILLDPY------SSMPSSTWEDEVE 69
           S+  +QK G     +F G+ CI    +++ CF  +L+ +      S +PS   + E++
Sbjct: 816 SVDTKQKGGALDIKSFAGVFCILAAGIVLSCFIAMLETWWNKRKGSRVPSKEDDKEID 873


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,742,909
Number of Sequences: 37866
Number of extensions: 88009
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 6
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.