Search of human proteins with 22267436

Search of human proteins with 22267436

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22267436 nipsnap homolog 3A [Homo sapiens]
         (247 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22267436 nipsnap homolog 3A [Homo sapiens]                         512   e-145
gi|21361743 nipsnap homolog 3B [Homo sapiens]                         454   e-128
gi|4503937 nipsnap homolog 2 [Homo sapiens]                            65   7e-11
gi|193211616 nipsnap homolog 1 [Homo sapiens]                          60   2e-09
gi|239756403 PREDICTED: hypothetical protein XP_002344915 [Homo ...    28   7.4  
gi|239750930 PREDICTED: hypothetical protein [Homo sapiens]            28   7.4  
gi|119395746 Kallmann syndrome 1 protein precursor [Homo sapiens]      28   7.4  

>gi|22267436 nipsnap homolog 3A [Homo sapiens]
          Length = 247

 Score =  512 bits (1318), Expect = e-145
 Identities = 247/247 (100%), Positives = 247/247 (100%)

Query: 1   MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEFRSYYLKPSKMNEFLENFEKNA 60
           MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEFRSYYLKPSKMNEFLENFEKNA
Sbjct: 1   MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEFRSYYLKPSKMNEFLENFEKNA 60

Query: 61  HLRTAHSELVGYWSVEFGGRMNTVFHIWKYDNFAHRTEVRKALAKDKEWQEQFLIPNLAL 120
           HLRTAHSELVGYWSVEFGGRMNTVFHIWKYDNFAHRTEVRKALAKDKEWQEQFLIPNLAL
Sbjct: 61  HLRTAHSELVGYWSVEFGGRMNTVFHIWKYDNFAHRTEVRKALAKDKEWQEQFLIPNLAL 120

Query: 121 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKL 180
           IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKL
Sbjct: 121 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKL 180

Query: 181 VGVFHTEYGALNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP 240
           VGVFHTEYGALNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP
Sbjct: 181 VGVFHTEYGALNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP 240

Query: 241 TSFSPLK 247
           TSFSPLK
Sbjct: 241 TSFSPLK 247


>gi|21361743 nipsnap homolog 3B [Homo sapiens]
          Length = 247

 Score =  454 bits (1167), Expect = e-128
 Identities = 215/247 (87%), Positives = 230/247 (93%)

Query: 1   MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEFRSYYLKPSKMNEFLENFEKNA 60
           MLVLRS LT+ALASRTLAPQ+CSSFATGPRQYDG FYEFR+YYLKPS MN F+EN +KN 
Sbjct: 1   MLVLRSGLTKALASRTLAPQVCSSFATGPRQYDGTFYEFRTYYLKPSNMNAFMENLKKNI 60

Query: 61  HLRTAHSELVGYWSVEFGGRMNTVFHIWKYDNFAHRTEVRKALAKDKEWQEQFLIPNLAL 120
           HLRT++SELVG+WSVEFGGR N VFHIWKYDNFAHR EVRKALA  KEWQEQ +IPNLA 
Sbjct: 61  HLRTSYSELVGFWSVEFGGRTNKVFHIWKYDNFAHRAEVRKALANCKEWQEQSIIPNLAR 120

Query: 121 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKL 180
           IDKQE+EITYL+PW KLEKPPKEGVYELA FQMKPGGPALWGDAF+RA++AHVNLGYTK+
Sbjct: 121 IDKQETEITYLIPWSKLEKPPKEGVYELAVFQMKPGGPALWGDAFERAINAHVNLGYTKV 180

Query: 181 VGVFHTEYGALNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP 240
           VGVFHTEYG LNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP
Sbjct: 181 VGVFHTEYGELNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP 240

Query: 241 TSFSPLK 247
            SFSPLK
Sbjct: 241 ASFSPLK 247


>gi|4503937 nipsnap homolog 2 [Homo sapiens]
          Length = 286

 Score = 64.7 bits (156), Expect = 7e-11
 Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 8/182 (4%)

Query: 69  LVGYWSVEFGGRMNTVFHIWKYDN-FAHRTEVRKALAKDKEWQEQFLIPNLALIDKQESE 127
           LVG W+  +G +   V H+W+Y+  +   TEV   L ++KE+ E     +  L+ ++   
Sbjct: 110 LVGTWNTWYGEQDQAV-HLWRYEGGYPALTEVMNKLRENKEFLEFRKARSDMLLSRKNQL 168

Query: 128 ITYLVPWCKLEKPPKEG--VYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFH 185
           +     W   E  P+ G  +YEL ++Q++PG    WG+ + RA+    +    + VG F 
Sbjct: 169 LLEFSFWN--EPVPRSGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQD--GNEAVGGFF 224

Query: 186 TEYGALNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIPTSFSP 245
           ++ G L  VH LW      +R   R+ +         V  +V  +   ++ ++IP   SP
Sbjct: 225 SQIGQLYMVHHLWAYRDLQTREDIRNAAWHKHGWEELVYYTVPLIQEMESRIMIPLKTSP 284

Query: 246 LK 247
           L+
Sbjct: 285 LQ 286



 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 2   LVLRSALTRALASRTLAPQMCSSFATGPRQYDGI-FYEFRSYYLKPSKMNEFLENFEKNA 60
           L  R A +  L SR     +  SF   P    G   YE RSY L+P  M E+   + +  
Sbjct: 151 LEFRKARSDMLLSRKNQLLLEFSFWNEPVPRSGPNIYELRSYQLRPGTMIEWGNYWARAI 210

Query: 61  HLRTAHSELVGYWSVEFGGRMNTVFHIWKYDNFAHRTEVRKALAKDKEWQEQFLIPNLAL 120
             R   +E VG +  +  G++  V H+W Y +   R ++R A      W E+ +   + L
Sbjct: 211 RFRQDGNEAVGGFFSQI-GQLYMVHHLWAYRDLQTREDIRNAAWHKHGW-EELVYYTVPL 268

Query: 121 IDKQESEI 128
           I + ES I
Sbjct: 269 IQEMESRI 276


>gi|193211616 nipsnap homolog 1 [Homo sapiens]
          Length = 284

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 8/216 (3%)

Query: 37  YEFRSYYLKPSKM---NEFLENFEKNAHLRTAHS-ELVGYWSVEFGGRMNTVFHIWKYDN 92
           Y+ + + +KP  +   N   E      HL   +   LVG W+  +G +   V H+W++  
Sbjct: 72  YKIQFHNVKPEYLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQDQAV-HLWRFSG 130

Query: 93  -FAHRTEVRKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEGVYELATF 151
            +    +    L  +KE+ E     +  L+ ++   +     W + +      +YEL T+
Sbjct: 131 GYPALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRMGPNIYELRTY 190

Query: 152 QMKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNESADSRAAGRH 211
           ++KPG    WG+ + RA+         + VG F ++ G L  VH LW  +   SR   R+
Sbjct: 191 KLKPGTMIEWGNNWARAIKYRQE--NQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRN 248

Query: 212 KSHEDPRVVAAVRESVNYLVSQQNMLLIPTSFSPLK 247
            +         V  +V  +   ++ ++IP   SPL+
Sbjct: 249 AAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ 284


>gi|239756403 PREDICTED: hypothetical protein XP_002344915 [Homo
           sapiens]
          Length = 118

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 160 LWGDAFKRAVHAHVNLGYTKLVGVFHTEYG----ALNRVHVLWWNESADSRAAGRH 211
           L GDA  RAVH + NL    LV   H  Y     AL R   +++N   D+     H
Sbjct: 29  LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVH 84



 Score = 28.1 bits (61), Expect = 7.4
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 160 LWGDAFKRAVHAHVNLGYTKLVGVFHTEYG----ALNRVHVLWWNESADSRAA 208
           L GDA  RAVH + NL    LV   H  Y     AL R   +++N   D+  A
Sbjct: 59  LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALGA 111



 Score = 27.7 bits (60), Expect = 9.6
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 162 GDAFKRAVHAHVNLGYTKLVGVFHTEYG----ALNRVHVLWWNESADSRAAGRH 211
           GDA  R VHA+ NL    LV   H  Y     AL R   +++N   D+     H
Sbjct: 16  GDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVH 69


>gi|239750930 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 116

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 160 LWGDAFKRAVHAHVNLGYTKLVGVFHTEYG----ALNRVHVLWWNESADSRAAGRH 211
           L GDA  RAVH + NL    LV   H  Y     AL R   +++N   D+     H
Sbjct: 29  LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVH 84



 Score = 27.7 bits (60), Expect = 9.6
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 162 GDAFKRAVHAHVNLGYTKLVGVFHTEYG----ALNRVHVLWWNESADSRAAGRH 211
           GDA  R VHA+ NL    LV   H  Y     AL R   +++N   D+     H
Sbjct: 16  GDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVH 69


>gi|119395746 Kallmann syndrome 1 protein precursor [Homo sapiens]
          Length = 680

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 12/105 (11%)

Query: 136 KLEKPPKEGVYELATFQMK-PGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRV 194
           +L K  K G+     FQ + P  P   G  F +     V + + K      TE   +NR 
Sbjct: 405 QLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKK------TEDPTVNRY 458

Query: 195 HVLWWNES-ADSRAAGRHKS----HEDPRVVAAVRESVNYLVSQQ 234
           HV W+ E+ A +R  G   S    HE+  ++  +  S  Y V+ Q
Sbjct: 459 HVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQ 503


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,472,664
Number of Sequences: 37866
Number of extensions: 397102
Number of successful extensions: 749
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 13
length of query: 247
length of database: 18,247,518
effective HSP length: 100
effective length of query: 147
effective length of database: 14,460,918
effective search space: 2125754946
effective search space used: 2125754946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.