Search of human proteins with 221554541

Search of human proteins with 221554541

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|221554541 docking protein 3 isoform 3 [Homo sapiens]
         (228 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|221554541 docking protein 3 isoform 3 [Homo sapiens]               465   e-131
gi|221554539 docking protein 3 isoform 2 [Homo sapiens]               419   e-118
gi|221554537 docking protein 3 isoform 1 [Homo sapiens]               187   6e-48
gi|41406050 docking protein 2 [Homo sapiens]                           66   3e-11
gi|4503357 docking protein 1 [Homo sapiens]                            62   5e-10
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         30   2.2  
gi|5032055 reticulon 2 isoform A [Homo sapiens]                        29   3.8  
gi|46255005 reticulon 2 isoform B [Homo sapiens]                       29   3.8  
gi|118498364 dapper 1 isoform 2 [Homo sapiens]                         28   8.5  
gi|24158478 dapper 1 isoform 1 [Homo sapiens]                          28   8.5  

>gi|221554541 docking protein 3 isoform 3 [Homo sapiens]
          Length = 228

 Score =  465 bits (1197), Expect = e-131
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MDPLETPIKDGILYQQHVKFGKGTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFP 60
           MDPLETPIKDGILYQQHVKFGKGTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFP
Sbjct: 1   MDPLETPIKDGILYQQHVKFGKGTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFP 60

Query: 61  VVVQRTEAATRCQLKGPALLVLGPDAIQLREAKGTQALYSWPYHFLRKFGSDKILLGTPG 120
           VVVQRTEAATRCQLKGPALLVLGPDAIQLREAKGTQALYSWPYHFLRKFGSDKILLGTPG
Sbjct: 61  VVVQRTEAATRCQLKGPALLVLGPDAIQLREAKGTQALYSWPYHFLRKFGSDKILLGTPG 120

Query: 121 VSLLICKGERTDDVSGIILDESLLRAYSVPGAGGHSRVQDSLGPVLREPTFQGERSFLKT 180
           VSLLICKGERTDDVSGIILDESLLRAYSVPGAGGHSRVQDSLGPVLREPTFQGERSFLKT
Sbjct: 121 VSLLICKGERTDDVSGIILDESLLRAYSVPGAGGHSRVQDSLGPVLREPTFQGERSFLKT 180

Query: 181 SMLRSLLCSCSWRHPRSQPRTQASCLQGSDCPAPHRNSTSAAHTLGTS 228
           SMLRSLLCSCSWRHPRSQPRTQASCLQGSDCPAPHRNSTSAAHTLGTS
Sbjct: 181 SMLRSLLCSCSWRHPRSQPRTQASCLQGSDCPAPHRNSTSAAHTLGTS 228


>gi|221554539 docking protein 3 isoform 2 [Homo sapiens]
          Length = 330

 Score =  419 bits (1078), Expect = e-118
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 23  GTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPALLVL 82
           GTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPALLVL
Sbjct: 125 GTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPALLVL 184

Query: 83  GPDAIQLREAKGTQALYSWPYHFLRKFGSDKILLGTPGVSLLICKGERTDDVSGIILDES 142
           GPDAIQLREAKGTQALYSWPYHFLRKFGSDKILLGTPGVSLLICKGERTDDVSGIILDES
Sbjct: 185 GPDAIQLREAKGTQALYSWPYHFLRKFGSDKILLGTPGVSLLICKGERTDDVSGIILDES 244

Query: 143 LLRAYSVPGAGGHSRVQDSLGPVLREPTFQGERSFLKTSMLRSLLCSCSWRHPRSQPRTQ 202
           LLRAYSVPGAGGHSRVQDSLGPVLREPTFQGERSFLKTSMLRSLLCSCSWRHPRSQPRTQ
Sbjct: 245 LLRAYSVPGAGGHSRVQDSLGPVLREPTFQGERSFLKTSMLRSLLCSCSWRHPRSQPRTQ 304

Query: 203 ASCLQGSDCPAPHRNSTSAAHTLGTS 228
           ASCLQGSDCPAPHRNSTSAAHTLGTS
Sbjct: 305 ASCLQGSDCPAPHRNSTSAAHTLGTS 330



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 1  MDPLETPIKDGILYQQHVKFGK 22
          MDPLETPIKDGILYQQHVKFGK
Sbjct: 1  MDPLETPIKDGILYQQHVKFGK 22


>gi|221554537 docking protein 3 isoform 1 [Homo sapiens]
          Length = 496

 Score =  187 bits (475), Expect = 6e-48
 Identities = 91/91 (100%), Positives = 91/91 (100%)

Query: 23  GTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPALLVL 82
           GTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPALLVL
Sbjct: 181 GTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPALLVL 240

Query: 83  GPDAIQLREAKGTQALYSWPYHFLRKFGSDK 113
           GPDAIQLREAKGTQALYSWPYHFLRKFGSDK
Sbjct: 241 GPDAIQLREAKGTQALYSWPYHFLRKFGSDK 271



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 1  MDPLETPIKDGILYQQHVKFGK 22
          MDPLETPIKDGILYQQHVKFGK
Sbjct: 57 MDPLETPIKDGILYQQHVKFGK 78


>gi|41406050 docking protein 2 [Homo sapiens]
          Length = 412

 Score = 65.9 bits (159), Expect = 3e-11
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 6/76 (7%)

Query: 44  MEENSIYSSWQEVG---EFPVVVQRTEAATRCQLKGPALLVLGPDAIQL--REAKGTQAL 98
           MEEN +YSS   VG   EF V ++ TEA+ RC L+G   L  G  A++L      GTQ L
Sbjct: 133 MEENELYSSAVTVGPHKEFAVTMRPTEASERCHLRGSYTLRAGESALELWGGPEPGTQ-L 191

Query: 99  YSWPYHFLRKFGSDKI 114
           Y WPY FLR+FG DK+
Sbjct: 192 YDWPYRFLRRFGRDKV 207


>gi|4503357 docking protein 1 [Homo sapiens]
          Length = 481

 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 37  PKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPALLVLGPDAIQL----REA 92
           PK   + M ENS+YS   E  +F V VQRTEAA RC L G  +L +  + + L     ++
Sbjct: 133 PKLSALEMLENSLYSPTWEGSQFWVTVQRTEAAERCGLHGSYVLRVEAERLTLLTVGAQS 192

Query: 93  KGTQALYSWPYHFLRKFGSDKIL 115
           +  + L SWPY  LR++G DK++
Sbjct: 193 QILEPLLSWPYTLLRRYGRDKVM 215


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 4    LETPIKDGILYQQHVKFGK---GTGEASSGSTDAQSP-----KRGLVPMEENSIYSSWQE 55
            L TP +   + ++H++ G    G+ E   G+  A +P     +RG  P +  S   + + 
Sbjct: 2817 LPTPPQQPFIARRHIELGVTGGGSPENGDGALLAITPPAVKRRRGRPPKKNRSPADAGRG 2876

Query: 56   VGEFPVVVQRTEAATRCQLKGPALLVLGPDAIQLREAKGTQALYSWPYH 104
            V E P    + +      + GP  L++    ++ +   G Q L   P H
Sbjct: 2877 VDEAPSSTLKGKTNGADPVPGPETLIVADPVLEPQLIPGPQPLGPQPVH 2925


>gi|5032055 reticulon 2 isoform A [Homo sapiens]
          Length = 545

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 3   PLETPIKDGILYQQHVKF-GKGTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGE 58
           P E P++D  L   H+ +  +GTG     ST + +P     P E N + +   E GE
Sbjct: 132 PSERPLEDLRLRLDHLGWVARGTGSGEDSSTSSSTPLEDEEPQEPNRLETG--EAGE 186


>gi|46255005 reticulon 2 isoform B [Homo sapiens]
          Length = 472

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 3   PLETPIKDGILYQQHVKF-GKGTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGE 58
           P E P++D  L   H+ +  +GTG     ST + +P     P E N + +   E GE
Sbjct: 132 PSERPLEDLRLRLDHLGWVARGTGSGEDSSTSSSTPLEDEEPQEPNRLETG--EAGE 186


>gi|118498364 dapper 1 isoform 2 [Homo sapiens]
          Length = 799

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 7/51 (13%)

Query: 15  QQHVKFGK-GTGEAS------SGSTDAQSPKRGLVPMEENSIYSSWQEVGE 58
           Q+H +    GTGE+       SG++  +SP RG  P +EN +    +++ +
Sbjct: 424 QEHARCSAIGTGESPKESAQLSGASPKESPSRGPAPPQENKVVQPLKKMSQ 474


>gi|24158478 dapper 1 isoform 1 [Homo sapiens]
          Length = 836

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 7/51 (13%)

Query: 15  QQHVKFGK-GTGEAS------SGSTDAQSPKRGLVPMEENSIYSSWQEVGE 58
           Q+H +    GTGE+       SG++  +SP RG  P +EN +    +++ +
Sbjct: 461 QEHARCSAIGTGESPKESAQLSGASPKESPSRGPAPPQENKVVQPLKKMSQ 511


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,040,337
Number of Sequences: 37866
Number of extensions: 456289
Number of successful extensions: 964
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 954
Number of HSP's gapped (non-prelim): 12
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.