Search of human proteins with 21914862

Search of human proteins with 21914862

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21914862 cat eye syndrome chromosome region, candidate 5
isoform 1 [Homo sapiens]
         (393 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21914862 cat eye syndrome chromosome region, candidate 5 isof...   800   0.0  
gi|14861834 cat eye syndrome chromosome region, candidate 5 isof...   775   0.0  
gi|150170725 zinc and ring finger 4 [Homo sapiens]                     30   3.8  
gi|108796653 phosphoglycolate phosphatase [Homo sapiens]               30   4.9  
gi|10092677 pyridoxal phosphatase [Homo sapiens]                       29   8.4  
gi|40807463 zinc finger protein 339 [Homo sapiens]                     29   8.4  

>gi|21914862 cat eye syndrome chromosome region, candidate 5 isoform
           1 [Homo sapiens]
          Length = 393

 Score =  800 bits (2065), Expect = 0.0
 Identities = 393/393 (100%), Positives = 393/393 (100%)

Query: 1   MYAWFFLPSFSQSPPTFGFLLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVTN 60
           MYAWFFLPSFSQSPPTFGFLLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVTN
Sbjct: 1   MYAWFFLPSFSQSPPTFGFLLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVTN 60

Query: 61  AGNILQHSKAQELSALLGCEVDADQVILSHSPMKLFSEYHEKRMLVSGQGPVMENAQGLG 120
           AGNILQHSKAQELSALLGCEVDADQVILSHSPMKLFSEYHEKRMLVSGQGPVMENAQGLG
Sbjct: 61  AGNILQHSKAQELSALLGCEVDADQVILSHSPMKLFSEYHEKRMLVSGQGPVMENAQGLG 120

Query: 121 FRNVVTVDELRMAFPLLDMVDLERRLKTTPLPRNDFPRIEGVLLLGEPVRWETSLQLIMD 180
           FRNVVTVDELRMAFPLLDMVDLERRLKTTPLPRNDFPRIEGVLLLGEPVRWETSLQLIMD
Sbjct: 121 FRNVVTVDELRMAFPLLDMVDLERRLKTTPLPRNDFPRIEGVLLLGEPVRWETSLQLIMD 180

Query: 181 VLLSNGSPGAGLATPPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYQKVTGKE 240
           VLLSNGSPGAGLATPPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYQKVTGKE
Sbjct: 181 VLLSNGSPGAGLATPPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYQKVTGKE 240

Query: 241 LRYEGLMGKPSILTYQYAEDLIRRQAERRGWAAPIRKLYAVGDNPMSDVYGANLFHQYLQ 300
           LRYEGLMGKPSILTYQYAEDLIRRQAERRGWAAPIRKLYAVGDNPMSDVYGANLFHQYLQ
Sbjct: 241 LRYEGLMGKPSILTYQYAEDLIRRQAERRGWAAPIRKLYAVGDNPMSDVYGANLFHQYLQ 300

Query: 301 KATHDGAPELGAGGTRQQQPSASQSCISILVCTGVYNPRNPQSTEPVLGGGEPPFHGHRD 360
           KATHDGAPELGAGGTRQQQPSASQSCISILVCTGVYNPRNPQSTEPVLGGGEPPFHGHRD
Sbjct: 301 KATHDGAPELGAGGTRQQQPSASQSCISILVCTGVYNPRNPQSTEPVLGGGEPPFHGHRD 360

Query: 361 LCFSPGLMEASHVVNDVNEAVQLVFRKEGWALE 393
           LCFSPGLMEASHVVNDVNEAVQLVFRKEGWALE
Sbjct: 361 LCFSPGLMEASHVVNDVNEAVQLVFRKEGWALE 393


>gi|14861834 cat eye syndrome chromosome region, candidate 5 isoform
           2 precursor [Homo sapiens]
          Length = 423

 Score =  775 bits (2002), Expect = 0.0
 Identities = 382/383 (99%), Positives = 383/383 (100%)

Query: 11  SQSPPTFGFLLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKA 70
           +QSPPTFGFLLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKA
Sbjct: 41  AQSPPTFGFLLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKA 100

Query: 71  QELSALLGCEVDADQVILSHSPMKLFSEYHEKRMLVSGQGPVMENAQGLGFRNVVTVDEL 130
           QELSALLGCEVDADQVILSHSPMKLFSEYHEKRMLVSGQGPVMENAQGLGFRNVVTVDEL
Sbjct: 101 QELSALLGCEVDADQVILSHSPMKLFSEYHEKRMLVSGQGPVMENAQGLGFRNVVTVDEL 160

Query: 131 RMAFPLLDMVDLERRLKTTPLPRNDFPRIEGVLLLGEPVRWETSLQLIMDVLLSNGSPGA 190
           RMAFPLLDMVDLERRLKTTPLPRNDFPRIEGVLLLGEPVRWETSLQLIMDVLLSNGSPGA
Sbjct: 161 RMAFPLLDMVDLERRLKTTPLPRNDFPRIEGVLLLGEPVRWETSLQLIMDVLLSNGSPGA 220

Query: 191 GLATPPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYQKVTGKELRYEGLMGKP 250
           GLATPPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYQKVTGKELRYEGLMGKP
Sbjct: 221 GLATPPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYQKVTGKELRYEGLMGKP 280

Query: 251 SILTYQYAEDLIRRQAERRGWAAPIRKLYAVGDNPMSDVYGANLFHQYLQKATHDGAPEL 310
           SILTYQYAEDLIRRQAERRGWAAPIRKLYAVGDNPMSDVYGANLFHQYLQKATHDGAPEL
Sbjct: 281 SILTYQYAEDLIRRQAERRGWAAPIRKLYAVGDNPMSDVYGANLFHQYLQKATHDGAPEL 340

Query: 311 GAGGTRQQQPSASQSCISILVCTGVYNPRNPQSTEPVLGGGEPPFHGHRDLCFSPGLMEA 370
           GAGGTRQQQPSASQSCISILVCTGVYNPRNPQSTEPVLGGGEPPFHGHRDLCFSPGLMEA
Sbjct: 341 GAGGTRQQQPSASQSCISILVCTGVYNPRNPQSTEPVLGGGEPPFHGHRDLCFSPGLMEA 400

Query: 371 SHVVNDVNEAVQLVFRKEGWALE 393
           SHVVNDVNEAVQLVFRKEGWALE
Sbjct: 401 SHVVNDVNEAVQLVFRKEGWALE 423


>gi|150170725 zinc and ring finger 4 [Homo sapiens]
          Length = 429

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%)

Query: 48  QGQLRVPVVFVTNAGNILQHSKAQELSALLGCEVDADQVILSHSP 92
           +GQ+ +P VFV+ A +       Q+L  +LGC   A  ++L   P
Sbjct: 204 RGQIAIPSVFVSEAAS-------QDLRVILGCNKSAHALLLPDDP 241


>gi|108796653 phosphoglycolate phosphatase [Homo sapiens]
          Length = 321

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 20 LLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKAQELSAL 76
          L D DGVL RG   +P A +A R L  ++G+    + F+TN  +  + + A++L  L
Sbjct: 32 LFDCDGVLWRGETAVPGAPEALRAL-RARGK---RLGFITNNSSKTRAAYAEKLRRL 84


>gi|10092677 pyridoxal phosphatase [Homo sapiens]
          Length = 296

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 18 GFLLDIDGVLVRGHRVIPAALKAFRRLVNS 47
          G L D DGVL  G R +P A +   RL  +
Sbjct: 21 GVLFDCDGVLWNGERAVPGAPELLERLARA 50


>gi|40807463 zinc finger protein 339 [Homo sapiens]
          Length = 275

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 267 ERRGWAAPIRKLYAVGDNPMSDVYG----ANLFHQYLQKATHDGAPELGAGGTRQQQPSA 322
           +RR     +R    + D   +D Y       L H   +    DG    G+G +   +P  
Sbjct: 8   KRRSLGVSVRSWDELPDEKRADTYIPVGLGRLLHDPPEDCRSDGGSSSGSGSSSAGEPGG 67

Query: 323 SQSCISILVCTGVYNPRNPQSTEPVLGGGEPPFHGH 358
           ++S  S         P  P+S  P  G  E P  GH
Sbjct: 68  AESSSS---------PHAPESETPEPGDAEGP-DGH 93


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,625,938
Number of Sequences: 37866
Number of extensions: 801160
Number of successful extensions: 1734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1729
Number of HSP's gapped (non-prelim): 7
length of query: 393
length of database: 18,247,518
effective HSP length: 104
effective length of query: 289
effective length of database: 14,309,454
effective search space: 4135432206
effective search space used: 4135432206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.