Search of human proteins with 21450679

Search of human proteins with 21450679

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21450679 IMP1 inner mitochondrial membrane peptidase-like
[Homo sapiens]
         (166 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21450679 IMP1 inner mitochondrial membrane peptidase-like [Ho...   351   2e-97
gi|14211845 IMP2 inner mitochondrial membrane protease-like [Hom...    84   6e-17
gi|154090979 hypothetical protein LOC57481 [Homo sapiens]              27   6.1  

>gi|21450679 IMP1 inner mitochondrial membrane peptidase-like [Homo
           sapiens]
          Length = 166

 Score =  351 bits (900), Expect = 2e-97
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MLRGVLGKTFRLVGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQNSDIVFAENLSRHF 60
           MLRGVLGKTFRLVGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQNSDIVFAENLSRHF
Sbjct: 1   MLRGVLGKTFRLVGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQNSDIVFAENLSRHF 60

Query: 61  YGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILTTSPSDFFKSHSYVPMGHVWLEGDNL 120
           YGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILTTSPSDFFKSHSYVPMGHVWLEGDNL
Sbjct: 61  YGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILTTSPSDFFKSHSYVPMGHVWLEGDNL 120

Query: 121 QNSTDSRCYGPIPYGLIRGRIFFKIWPLSDFGFLRASPNGHRFSDD 166
           QNSTDSRCYGPIPYGLIRGRIFFKIWPLSDFGFLRASPNGHRFSDD
Sbjct: 121 QNSTDSRCYGPIPYGLIRGRIFFKIWPLSDFGFLRASPNGHRFSDD 166


>gi|14211845 IMP2 inner mitochondrial membrane protease-like [Homo
           sapiens]
          Length = 175

 Score = 84.0 bits (206), Expect = 6e-17
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 8/131 (6%)

Query: 22  IAHCAFEYVGGVVMCSGPSMEPTI-----QNSDIVFAENLSRHFYGIQRGDIVIAKSPSD 76
           +A    + V  V    G SM+P++     Q+SD+V   +     + + RGDIV   SP +
Sbjct: 25  VAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVLLNHWKVRNFEVHRGDIVSLVSPKN 84

Query: 77  PKSNICKRVIGLEGDKILTTSPSDFFKSHSYVPMGHVWLEGDNLQNSTDSRCYGPIPYGL 136
           P+  I KRVI LEGD + T    + +     VP GH+W+EGD+  +S DS  +GP+  GL
Sbjct: 85  PEQKIIKRVIALEGDIVRTIGHKNRYVK---VPRGHIWVEGDHHGHSFDSNSFGPVSLGL 141

Query: 137 IRGRIFFKIWP 147
           +       +WP
Sbjct: 142 LHAHATHILWP 152


>gi|154090979 hypothetical protein LOC57481 [Homo sapiens]
          Length = 1709

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 96  TSPSDFFKSHSYVPMGHVWLEGDNLQNSTDSRCYGPIPYGLI 137
           +SP++  K+   VP  H+ LE DN++  T S+     P GL+
Sbjct: 572 SSPTN--KTARNVPFSHLSLEKDNMEQPTTSQPETTTPQGLL 611


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.143    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,962,039
Number of Sequences: 37866
Number of extensions: 308414
Number of successful extensions: 431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 3
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.