Guide to the Human Genome
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Search of human proteins with 205360941

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|205360941 uridine phosphorylase 2 isoform b [Homo sapiens]
         (374 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|205360941 uridine phosphorylase 2 isoform b [Homo sapiens]         763   0.0  
gi|27597096 uridine phosphorylase 2 isoform a [Homo sapiens]          647   0.0  
gi|31742508 uridine phosphorylase 1 [Homo sapiens]                    386   e-107
gi|4507839 uridine phosphorylase 1 [Homo sapiens]                     386   e-107
gi|24308324 fatty acyl CoA reductase 1 [Homo sapiens]                  32   0.71 
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]       29   7.8  

>gi|205360941 uridine phosphorylase 2 isoform b [Homo sapiens]
          Length = 374

 Score =  763 bits (1969), Expect = 0.0
 Identities = 374/374 (100%), Positives = 374/374 (100%)

Query: 1   MLAPGCELDPDQEVVRTRPEDVPASPSTSTMIVSVLRPPSHASCTACGTVTFHIVERMAS 60
           MLAPGCELDPDQEVVRTRPEDVPASPSTSTMIVSVLRPPSHASCTACGTVTFHIVERMAS
Sbjct: 1   MLAPGCELDPDQEVVRTRPEDVPASPSTSTMIVSVLRPPSHASCTACGTVTFHIVERMAS 60

Query: 61  VIPASNRSMRSDRNTYVGKRFVHVKNPYLDLMDEDILYHLDLGTKTHNLPAMFGDVKFVC 120
           VIPASNRSMRSDRNTYVGKRFVHVKNPYLDLMDEDILYHLDLGTKTHNLPAMFGDVKFVC
Sbjct: 61  VIPASNRSMRSDRNTYVGKRFVHVKNPYLDLMDEDILYHLDLGTKTHNLPAMFGDVKFVC 120

Query: 121 VGGSPNRMKAFALFMHKELGFEEAEEDIKDICAGTDRYCMYKTGPVLAISHGMGIPSISI 180
           VGGSPNRMKAFALFMHKELGFEEAEEDIKDICAGTDRYCMYKTGPVLAISHGMGIPSISI
Sbjct: 121 VGGSPNRMKAFALFMHKELGFEEAEEDIKDICAGTDRYCMYKTGPVLAISHGMGIPSISI 180

Query: 181 MLHELIKLLHHARCCDVTIIRIGTSGGIGIAPGTVVITDIAVDSFFKPRFEQVILDNIVT 240
           MLHELIKLLHHARCCDVTIIRIGTSGGIGIAPGTVVITDIAVDSFFKPRFEQVILDNIVT
Sbjct: 181 MLHELIKLLHHARCCDVTIIRIGTSGGIGIAPGTVVITDIAVDSFFKPRFEQVILDNIVT 240

Query: 241 RSTELDKELSEELFNCSKEIPNFPTLVGHTMCTYDFYEGQGRLDGALCSFSREKKLDYLK 300
           RSTELDKELSEELFNCSKEIPNFPTLVGHTMCTYDFYEGQGRLDGALCSFSREKKLDYLK
Sbjct: 241 RSTELDKELSEELFNCSKEIPNFPTLVGHTMCTYDFYEGQGRLDGALCSFSREKKLDYLK 300

Query: 301 RAFKAGVRNIEMESTVFAAMCGLCGLKAAVVCVTLLDRLDCDQINLPHDVLVEYQQRPQL 360
           RAFKAGVRNIEMESTVFAAMCGLCGLKAAVVCVTLLDRLDCDQINLPHDVLVEYQQRPQL
Sbjct: 301 RAFKAGVRNIEMESTVFAAMCGLCGLKAAVVCVTLLDRLDCDQINLPHDVLVEYQQRPQL 360

Query: 361 LISNFIRRRLGLCD 374
           LISNFIRRRLGLCD
Sbjct: 361 LISNFIRRRLGLCD 374


>gi|27597096 uridine phosphorylase 2 isoform a [Homo sapiens]
          Length = 317

 Score =  647 bits (1668), Expect = 0.0
 Identities = 317/317 (100%), Positives = 317/317 (100%)

Query: 58  MASVIPASNRSMRSDRNTYVGKRFVHVKNPYLDLMDEDILYHLDLGTKTHNLPAMFGDVK 117
           MASVIPASNRSMRSDRNTYVGKRFVHVKNPYLDLMDEDILYHLDLGTKTHNLPAMFGDVK
Sbjct: 1   MASVIPASNRSMRSDRNTYVGKRFVHVKNPYLDLMDEDILYHLDLGTKTHNLPAMFGDVK 60

Query: 118 FVCVGGSPNRMKAFALFMHKELGFEEAEEDIKDICAGTDRYCMYKTGPVLAISHGMGIPS 177
           FVCVGGSPNRMKAFALFMHKELGFEEAEEDIKDICAGTDRYCMYKTGPVLAISHGMGIPS
Sbjct: 61  FVCVGGSPNRMKAFALFMHKELGFEEAEEDIKDICAGTDRYCMYKTGPVLAISHGMGIPS 120

Query: 178 ISIMLHELIKLLHHARCCDVTIIRIGTSGGIGIAPGTVVITDIAVDSFFKPRFEQVILDN 237
           ISIMLHELIKLLHHARCCDVTIIRIGTSGGIGIAPGTVVITDIAVDSFFKPRFEQVILDN
Sbjct: 121 ISIMLHELIKLLHHARCCDVTIIRIGTSGGIGIAPGTVVITDIAVDSFFKPRFEQVILDN 180

Query: 238 IVTRSTELDKELSEELFNCSKEIPNFPTLVGHTMCTYDFYEGQGRLDGALCSFSREKKLD 297
           IVTRSTELDKELSEELFNCSKEIPNFPTLVGHTMCTYDFYEGQGRLDGALCSFSREKKLD
Sbjct: 181 IVTRSTELDKELSEELFNCSKEIPNFPTLVGHTMCTYDFYEGQGRLDGALCSFSREKKLD 240

Query: 298 YLKRAFKAGVRNIEMESTVFAAMCGLCGLKAAVVCVTLLDRLDCDQINLPHDVLVEYQQR 357
           YLKRAFKAGVRNIEMESTVFAAMCGLCGLKAAVVCVTLLDRLDCDQINLPHDVLVEYQQR
Sbjct: 241 YLKRAFKAGVRNIEMESTVFAAMCGLCGLKAAVVCVTLLDRLDCDQINLPHDVLVEYQQR 300

Query: 358 PQLLISNFIRRRLGLCD 374
           PQLLISNFIRRRLGLCD
Sbjct: 301 PQLLISNFIRRRLGLCD 317


>gi|31742508 uridine phosphorylase 1 [Homo sapiens]
          Length = 310

 Score =  386 bits (992), Expect = e-107
 Identities = 191/289 (66%), Positives = 231/289 (79%)

Query: 82  VHVKNPYLDLMDEDILYHLDLGTKTHNLPAMFGDVKFVCVGGSPNRMKAFALFMHKELGF 141
           V + NP +  M EDILYH +L T  HN PA+FGDVKFVCVGGSP+RMKAF   +  ELG 
Sbjct: 19  VRLLNPNIAKMKEDILYHFNLTTSRHNFPALFGDVKFVCVGGSPSRMKAFIRCVGAELGL 78

Query: 142 EEAEEDIKDICAGTDRYCMYKTGPVLAISHGMGIPSISIMLHELIKLLHHARCCDVTIIR 201
           +    D  +ICAGTDRY MYK GPVL++SHGMGIPSISIMLHELIKLL++ARC +VTIIR
Sbjct: 79  DCPGRDYPNICAGTDRYAMYKVGPVLSVSHGMGIPSISIMLHELIKLLYYARCSNVTIIR 138

Query: 202 IGTSGGIGIAPGTVVITDIAVDSFFKPRFEQVILDNIVTRSTELDKELSEELFNCSKEIP 261
           IGTSGGIG+ PGTVVIT+ AVD+ FK  FEQ++L   V R T+L+K+L +EL  CS E+ 
Sbjct: 139 IGTSGGIGLEPGTVVITEQAVDTCFKAEFEQIVLGKRVIRKTDLNKKLVQELLLCSAELS 198

Query: 262 NFPTLVGHTMCTYDFYEGQGRLDGALCSFSREKKLDYLKRAFKAGVRNIEMESTVFAAMC 321
            F T+VG+TMCT DFYEGQGRLDGALCS++ + K  YL+ A+ AGVRNIEMES+VFAAMC
Sbjct: 199 EFTTVVGNTMCTLDFYEGQGRLDGALCSYTEKDKQAYLEAAYAAGVRNIEMESSVFAAMC 258

Query: 322 GLCGLKAAVVCVTLLDRLDCDQINLPHDVLVEYQQRPQLLISNFIRRRL 370
             CGL+AAVVCVTLL+RL+ DQI+ P +VL EYQQRPQ L+S FI+++L
Sbjct: 259 SACGLQAAVVCVTLLNRLEGDQISSPRNVLSEYQQRPQRLVSYFIKKKL 307


>gi|4507839 uridine phosphorylase 1 [Homo sapiens]
          Length = 310

 Score =  386 bits (992), Expect = e-107
 Identities = 191/289 (66%), Positives = 231/289 (79%)

Query: 82  VHVKNPYLDLMDEDILYHLDLGTKTHNLPAMFGDVKFVCVGGSPNRMKAFALFMHKELGF 141
           V + NP +  M EDILYH +L T  HN PA+FGDVKFVCVGGSP+RMKAF   +  ELG 
Sbjct: 19  VRLLNPNIAKMKEDILYHFNLTTSRHNFPALFGDVKFVCVGGSPSRMKAFIRCVGAELGL 78

Query: 142 EEAEEDIKDICAGTDRYCMYKTGPVLAISHGMGIPSISIMLHELIKLLHHARCCDVTIIR 201
           +    D  +ICAGTDRY MYK GPVL++SHGMGIPSISIMLHELIKLL++ARC +VTIIR
Sbjct: 79  DCPGRDYPNICAGTDRYAMYKVGPVLSVSHGMGIPSISIMLHELIKLLYYARCSNVTIIR 138

Query: 202 IGTSGGIGIAPGTVVITDIAVDSFFKPRFEQVILDNIVTRSTELDKELSEELFNCSKEIP 261
           IGTSGGIG+ PGTVVIT+ AVD+ FK  FEQ++L   V R T+L+K+L +EL  CS E+ 
Sbjct: 139 IGTSGGIGLEPGTVVITEQAVDTCFKAEFEQIVLGKRVIRKTDLNKKLVQELLLCSAELS 198

Query: 262 NFPTLVGHTMCTYDFYEGQGRLDGALCSFSREKKLDYLKRAFKAGVRNIEMESTVFAAMC 321
            F T+VG+TMCT DFYEGQGRLDGALCS++ + K  YL+ A+ AGVRNIEMES+VFAAMC
Sbjct: 199 EFTTVVGNTMCTLDFYEGQGRLDGALCSYTEKDKQAYLEAAYAAGVRNIEMESSVFAAMC 258

Query: 322 GLCGLKAAVVCVTLLDRLDCDQINLPHDVLVEYQQRPQLLISNFIRRRL 370
             CGL+AAVVCVTLL+RL+ DQI+ P +VL EYQQRPQ L+S FI+++L
Sbjct: 259 SACGLQAAVVCVTLLNRLEGDQISSPRNVLSEYQQRPQRLVSYFIKKKL 307


>gi|24308324 fatty acyl CoA reductase 1 [Homo sapiens]
          Length = 515

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 33/128 (25%), Positives = 48/128 (37%), Gaps = 15/128 (11%)

Query: 19  PEDVPASPSTSTMIVSVLRPPSHA---SCTACGTVTFHIVERMASVIPASNRSMRSDRNT 75
           P DV  + S +    S +  P +    +CT   T  FH  E    VI    R+       
Sbjct: 277 PVDVVVNMSLAAAWYSGVNRPRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQA-- 334

Query: 76  YVGKRFVHVKNPYLDLMDEDILYHLDLGTKTHNLPAMFGDVKFVCVGGSPNRMKAFALFM 135
                    + P ++L    +LYH  +   +H  PA   D+     G SP  MK     +
Sbjct: 335 --------FRRPNVNLTSNHLLYHYWIAV-SHKAPAFLYDIYLRMTGRSPRMMKTITR-L 384

Query: 136 HKELGFEE 143
           HK + F E
Sbjct: 385 HKAMVFLE 392


>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
          Length = 2240

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 7    ELDP-DQEVVRTRPE--DVPASPSTSTMIVSVLRPPSHASCTACGTVT 51
            ELD  D++  R +PE  DVPA P  +T+  S  +P  +  C+A   V+
Sbjct: 1207 ELDKMDEKRTRLQPEEADVPAYPKVATVPQSEKKPSKYPLCSADAAVS 1254


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,588,394
Number of Sequences: 37866
Number of extensions: 633494
Number of successful extensions: 1843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1839
Number of HSP's gapped (non-prelim): 6
length of query: 374
length of database: 18,247,518
effective HSP length: 104
effective length of query: 270
effective length of database: 14,309,454
effective search space: 3863552580
effective search space used: 3863552580
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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