Search of human proteins with 19923977

Search of human proteins with 19923977

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|19923977 hypothetical protein LOC115416 [Homo sapiens]
         (234 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|19923977 hypothetical protein LOC115416 [Homo sapiens]             479   e-136
gi|5453844 TAF6-like RNA polymerase II [Homo sapiens]                  28   6.8  
gi|6912478 karyopherin alpha 6 [Homo sapiens]                          28   8.9  

>gi|19923977 hypothetical protein LOC115416 [Homo sapiens]
          Length = 234

 Score =  479 bits (1234), Expect = e-136
 Identities = 234/234 (100%), Positives = 234/234 (100%)

Query: 1   MGPGGRVARLLAPLMWRRAVSSVAGSAVGAEPGLRLLAVQRLPVGAAFCRACQTPNFVRG 60
           MGPGGRVARLLAPLMWRRAVSSVAGSAVGAEPGLRLLAVQRLPVGAAFCRACQTPNFVRG
Sbjct: 1   MGPGGRVARLLAPLMWRRAVSSVAGSAVGAEPGLRLLAVQRLPVGAAFCRACQTPNFVRG 60

Query: 61  LHSEPGLEERAEGTVNEGRPESDAADHTGPKFDIDMMVSLLRQENARDICVIQVPPEMRY 120
           LHSEPGLEERAEGTVNEGRPESDAADHTGPKFDIDMMVSLLRQENARDICVIQVPPEMRY
Sbjct: 61  LHSEPGLEERAEGTVNEGRPESDAADHTGPKFDIDMMVSLLRQENARDICVIQVPPEMRY 120

Query: 121 TDYFVIVSGTSTRHLHAMAFYVVKMYKHLKCKRDPHVKIEGKDTDDWLCVDFGSMVIHLM 180
           TDYFVIVSGTSTRHLHAMAFYVVKMYKHLKCKRDPHVKIEGKDTDDWLCVDFGSMVIHLM
Sbjct: 121 TDYFVIVSGTSTRHLHAMAFYVVKMYKHLKCKRDPHVKIEGKDTDDWLCVDFGSMVIHLM 180

Query: 181 LPETREIYELEKLWTLRSYDDQLAQIAPETVPEDFILGIEDDTSSVTPVELKCE 234
           LPETREIYELEKLWTLRSYDDQLAQIAPETVPEDFILGIEDDTSSVTPVELKCE
Sbjct: 181 LPETREIYELEKLWTLRSYDDQLAQIAPETVPEDFILGIEDDTSSVTPVELKCE 234


>gi|5453844 TAF6-like RNA polymerase II [Homo sapiens]
          Length = 622

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 2   GPGGRVARLLAPLMWRRAVSSVAGSAVGAEP 32
           GPGGR  R L  L W   +   + S  GAEP
Sbjct: 383 GPGGRGCRRLDDLPWDSLLFQESSSGGGAEP 413


>gi|6912478 karyopherin alpha 6 [Homo sapiens]
          Length = 536

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 186 EIYELEKLWTLRSYDDQ-LAQIAPETVPEDFILGIEDDTSSVTP 228
           E Y L+K+  L+S+++Q + Q A + +   F  G+EDD SS+ P
Sbjct: 472 EAYGLDKIEFLQSHENQEIYQKAFDLIEHYF--GVEDDDSSLAP 513


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,927,462
Number of Sequences: 37866
Number of extensions: 442498
Number of successful extensions: 906
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 3
length of query: 234
length of database: 18,247,518
effective HSP length: 99
effective length of query: 135
effective length of database: 14,498,784
effective search space: 1957335840
effective search space used: 1957335840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.