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Search of human proteins with 19923642
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923642 Hermansky-Pudlak syndrome 3 protein [Homo sapiens]
(1004 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923642 Hermansky-Pudlak syndrome 3 protein [Homo sapiens] 2015 0.0
gi|30794488 kinesin family member 27 [Homo sapiens] 36 0.16
gi|19743879 regulatory factor X2 isoform b [Homo sapiens] 35 0.27
gi|19743881 regulatory factor X2 isoform a [Homo sapiens] 35 0.27
gi|195976821 dysferlin isoform 2 [Homo sapiens] 32 3.9
gi|4503431 dysferlin isoform 8 [Homo sapiens] 32 3.9
gi|195976777 dysferlin isoform 3 [Homo sapiens] 32 3.9
gi|195976775 dysferlin isoform 4 [Homo sapiens] 32 3.9
gi|195976766 dysferlin isoform 7 [Homo sapiens] 32 3.9
gi|195976762 dysferlin isoform 13 [Homo sapiens] 32 3.9
gi|195976760 dysferlin isoform 12 [Homo sapiens] 32 3.9
gi|195976754 dysferlin isoform 9 [Homo sapiens] 32 3.9
gi|149192845 ubiquitin specific protease 24 [Homo sapiens] 31 6.7
gi|195976779 dysferlin isoform 1 [Homo sapiens] 30 8.7
gi|195976773 dysferlin isoform 5 [Homo sapiens] 30 8.7
gi|195976769 dysferlin isoform 6 [Homo sapiens] 30 8.7
gi|195976764 dysferlin isoform 14 [Homo sapiens] 30 8.7
gi|195976758 dysferlin isoform 11 [Homo sapiens] 30 8.7
gi|195976756 dysferlin isoform 10 [Homo sapiens] 30 8.7
>gi|19923642 Hermansky-Pudlak syndrome 3 protein [Homo sapiens]
Length = 1004
Score = 2015 bits (5220), Expect = 0.0
Identities = 1004/1004 (100%), Positives = 1004/1004 (100%)
Query: 1 MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFST 60
MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFST
Sbjct: 1 MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFST 60
Query: 61 LGRVLRLAYSEAGDYLVAIEEKNKATFLRAYVNWRNKRTENSRVCIRMIGHNVEGPFSKA 120
LGRVLRLAYSEAGDYLVAIEEKNKATFLRAYVNWRNKRTENSRVCIRMIGHNVEGPFSKA
Sbjct: 61 LGRVLRLAYSEAGDYLVAIEEKNKATFLRAYVNWRNKRTENSRVCIRMIGHNVEGPFSKA 120
Query: 121 FRDQMYIIEMPLSEAPLCISCCPVKGDLLVGCTNKLVLFSLKYQIINEEFSLLDFERSLI 180
FRDQMYIIEMPLSEAPLCISCCPVKGDLLVGCTNKLVLFSLKYQIINEEFSLLDFERSLI
Sbjct: 121 FRDQMYIIEMPLSEAPLCISCCPVKGDLLVGCTNKLVLFSLKYQIINEEFSLLDFERSLI 180
Query: 181 IHIDNITPVEVSFCVGYVAVMSDLEVLIVKLESGPKNGERVHHHPHKTNNRIRRTEEGIS 240
IHIDNITPVEVSFCVGYVAVMSDLEVLIVKLESGPKNGERVHHHPHKTNNRIRRTEEGIS
Sbjct: 181 IHIDNITPVEVSFCVGYVAVMSDLEVLIVKLESGPKNGERVHHHPHKTNNRIRRTEEGIS 240
Query: 241 NEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPD 300
NEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPD
Sbjct: 241 NEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPD 300
Query: 301 ISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKS 360
ISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKS
Sbjct: 301 ISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKS 360
Query: 361 VELMSVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPV 420
VELMSVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPV
Sbjct: 361 VELMSVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPV 420
Query: 421 SMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPP 480
SMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPP
Sbjct: 421 SMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPP 480
Query: 481 VAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQLE 540
VAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQLE
Sbjct: 481 VAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQLE 540
Query: 541 PGEKAELLEAFKESCGHLGDCYSRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQ 600
PGEKAELLEAFKESCGHLGDCYSRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQ
Sbjct: 541 PGEKAELLEAFKESCGHLGDCYSRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQ 600
Query: 601 KYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNINPLTAM 660
KYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNINPLTAM
Sbjct: 601 KYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNINPLTAM 660
Query: 661 SYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQR 720
SYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQR
Sbjct: 661 SYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQR 720
Query: 721 KGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVD 780
KGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVD
Sbjct: 721 KGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVD 780
Query: 781 FWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPW 840
FWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPW
Sbjct: 781 FWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPW 840
Query: 841 VHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTR 900
VHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTR
Sbjct: 841 VHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTR 900
Query: 901 LKEYEQCIDILLERCPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSS 960
LKEYEQCIDILLERCPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSS
Sbjct: 901 LKEYEQCIDILLERCPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSS 960
Query: 961 LKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRKKPLT 1004
LKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRKKPLT
Sbjct: 961 LKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRKKPLT 1004
>gi|30794488 kinesin family member 27 [Homo sapiens]
Length = 1401
Score = 36.2 bits (82), Expect = 0.16
Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 28/191 (14%)
Query: 62 GRVLRLAYSEAGDYLVAIEEKNKATFLRAYVNWRNKRTENSRVCIRMIGHNVEGPFSKAF 121
GRVL E L +EE +A L A + +RN+ +N + +R HN+
Sbjct: 1044 GRVLS---PEEEHVLFQLEEGIEA--LEAAIEYRNESIQNRQKSLRASFHNLSRG----- 1093
Query: 122 RDQMYIIEMPLSEAPLCISCCPVKGDLLVGCTNKLVLF---SLKYQIINEEFSLLDFERS 178
E + E C+S ++ +L NK+V K Q+ NEE + ER
Sbjct: 1094 -------EANVLEKLACLSPVEIR-TILFRYFNKVVNLREAERKQQLYNEEMKMKVLERD 1145
Query: 179 LIIHIDNITPVEVSFCVGYVAVMSDLEVLIVKLESGPKNGERVHHHPHKTNNRIRRTEEG 238
++ E+ + ++ + D + + + E K +HH + I T +
Sbjct: 1146 NMVR-------ELESALDHLKLQCDRRLTLQQKEHEQKMQLLLHHFKEQDGEGIMETFKT 1198
Query: 239 ISNEISQLESD 249
++I QLE D
Sbjct: 1199 YEDKIQQLEKD 1209
>gi|19743879 regulatory factor X2 isoform b [Homo sapiens]
Length = 698
Score = 35.4 bits (80), Expect = 0.27
Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 214 GPKNGERVHHH-----PHKTNNRIRRTEEGISNEISQLESDDFVICQKPLELLGEKSEQS 268
G + + H++ P NR++ + ++ + + + LG+ S
Sbjct: 233 GTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHS 292
Query: 269 GLSVTLESTGLADEK--RKYSHFQHLLYRRFAPDISSYVLSDDIKLHSLQLLPI 320
GL T E T + ++Y H+ APD+ S++L D + LH ++ L +
Sbjct: 293 GLHSTPEQTMAVQSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQL 346
>gi|19743881 regulatory factor X2 isoform a [Homo sapiens]
Length = 723
Score = 35.4 bits (80), Expect = 0.27
Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 214 GPKNGERVHHH-----PHKTNNRIRRTEEGISNEISQLESDDFVICQKPLELLGEKSEQS 268
G + + H++ P NR++ + ++ + + + LG+ S
Sbjct: 258 GTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHS 317
Query: 269 GLSVTLESTGLADEK--RKYSHFQHLLYRRFAPDISSYVLSDDIKLHSLQLLPI 320
GL T E T + ++Y H+ APD+ S++L D + LH ++ L +
Sbjct: 318 GLHSTPEQTMAVQSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQL 371
>gi|195976821 dysferlin isoform 2 [Homo sapiens]
Length = 2081
Score = 31.6 bits (70), Expect = 3.9
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 927 LKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGT 986
++EE WW K + +R KCG YL +TL + +LE NV +G
Sbjct: 1470 IQEEEFIDWWSKFFASIGEREKCGS-----YLEKDFDTLKVYDTQLE-----NVEAFEGL 1519
Query: 987 ATFFLPYLLY 996
+ F + LY
Sbjct: 1520 SDFCNTFKLY 1529
>gi|4503431 dysferlin isoform 8 [Homo sapiens]
Length = 2080
Score = 31.6 bits (70), Expect = 3.9
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 927 LKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGT 986
++EE WW K + +R KCG YL +TL + +LE NV +G
Sbjct: 1469 IQEEEFIDWWSKFFASIGEREKCGS-----YLEKDFDTLKVYDTQLE-----NVEAFEGL 1518
Query: 987 ATFFLPYLLY 996
+ F + LY
Sbjct: 1519 SDFCNTFKLY 1528
>gi|195976777 dysferlin isoform 3 [Homo sapiens]
Length = 2067
Score = 31.6 bits (70), Expect = 3.9
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 927 LKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGT 986
++EE WW K + +R KCG YL +TL + +LE NV +G
Sbjct: 1456 IQEEEFIDWWSKFFASIGEREKCGS-----YLEKDFDTLKVYDTQLE-----NVEAFEGL 1505
Query: 987 ATFFLPYLLY 996
+ F + LY
Sbjct: 1506 SDFCNTFKLY 1515
>gi|195976775 dysferlin isoform 4 [Homo sapiens]
Length = 2098
Score = 31.6 bits (70), Expect = 3.9
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 927 LKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGT 986
++EE WW K + +R KCG YL +TL + +LE NV +G
Sbjct: 1487 IQEEEFIDWWSKFFASIGEREKCGS-----YLEKDFDTLKVYDTQLE-----NVEAFEGL 1536
Query: 987 ATFFLPYLLY 996
+ F + LY
Sbjct: 1537 SDFCNTFKLY 1546
>gi|195976766 dysferlin isoform 7 [Homo sapiens]
Length = 2112
Score = 31.6 bits (70), Expect = 3.9
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 927 LKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGT 986
++EE WW K + +R KCG YL +TL + +LE NV +G
Sbjct: 1501 IQEEEFIDWWSKFFASIGEREKCGS-----YLEKDFDTLKVYDTQLE-----NVEAFEGL 1550
Query: 987 ATFFLPYLLY 996
+ F + LY
Sbjct: 1551 SDFCNTFKLY 1560
>gi|195976762 dysferlin isoform 13 [Homo sapiens]
Length = 2097
Score = 31.6 bits (70), Expect = 3.9
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 927 LKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGT 986
++EE WW K + +R KCG YL +TL + +LE NV +G
Sbjct: 1486 IQEEEFIDWWSKFFASIGEREKCGS-----YLEKDFDTLKVYDTQLE-----NVEAFEGL 1535
Query: 987 ATFFLPYLLY 996
+ F + LY
Sbjct: 1536 SDFCNTFKLY 1545
>gi|195976760 dysferlin isoform 12 [Homo sapiens]
Length = 2111
Score = 31.6 bits (70), Expect = 3.9
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 927 LKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGT 986
++EE WW K + +R KCG YL +TL + +LE NV +G
Sbjct: 1500 IQEEEFIDWWSKFFASIGEREKCGS-----YLEKDFDTLKVYDTQLE-----NVEAFEGL 1549
Query: 987 ATFFLPYLLY 996
+ F + LY
Sbjct: 1550 SDFCNTFKLY 1559
>gi|195976754 dysferlin isoform 9 [Homo sapiens]
Length = 2066
Score = 31.6 bits (70), Expect = 3.9
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 927 LKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGT 986
++EE WW K + +R KCG YL +TL + +LE NV +G
Sbjct: 1455 IQEEEFIDWWSKFFASIGEREKCGS-----YLEKDFDTLKVYDTQLE-----NVEAFEGL 1504
Query: 987 ATFFLPYLLY 996
+ F + LY
Sbjct: 1505 SDFCNTFKLY 1514
>gi|149192845 ubiquitin specific protease 24 [Homo sapiens]
Length = 2460
Score = 30.8 bits (68), Expect = 6.7
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 235 TEEGISNEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLY 294
T+ I + QL+S + LL E S QS S +L S + S L+
Sbjct: 950 TDPAIQEALDQLDS-----LGRKKTLLSESSSQSSKSPSLSSK--QQHQPSASSILESLF 1002
Query: 295 RRFAPDISSYVLSDDIKLHSLQLLP 319
R FAP +S++ + ++++ S +L+P
Sbjct: 1003 RSFAPGMSTFRVLYNLEVLSSKLMP 1027
>gi|195976779 dysferlin isoform 1 [Homo sapiens]
Length = 2119
Score = 30.4 bits (67), Expect = 8.7
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 929 EENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGTAT 988
EE WW K + +R KCG YL +TL + +LE NV +G +
Sbjct: 1510 EEEFIDWWSKFFASIGEREKCGS-----YLEKDFDTLKVYDTQLE-----NVEAFEGLSD 1559
Query: 989 FFLPYLLY 996
F + LY
Sbjct: 1560 FCNTFKLY 1567
>gi|195976773 dysferlin isoform 5 [Homo sapiens]
Length = 2088
Score = 30.4 bits (67), Expect = 8.7
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 929 EENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGTAT 988
EE WW K + +R KCG YL +TL + +LE NV +G +
Sbjct: 1479 EEEFIDWWSKFFASIGEREKCGS-----YLEKDFDTLKVYDTQLE-----NVEAFEGLSD 1528
Query: 989 FFLPYLLY 996
F + LY
Sbjct: 1529 FCNTFKLY 1536
>gi|195976769 dysferlin isoform 6 [Homo sapiens]
Length = 2102
Score = 30.4 bits (67), Expect = 8.7
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 929 EENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGTAT 988
EE WW K + +R KCG YL +TL + +LE NV +G +
Sbjct: 1493 EEEFIDWWSKFFASIGEREKCGS-----YLEKDFDTLKVYDTQLE-----NVEAFEGLSD 1542
Query: 989 FFLPYLLY 996
F + LY
Sbjct: 1543 FCNTFKLY 1550
>gi|195976764 dysferlin isoform 14 [Homo sapiens]
Length = 2118
Score = 30.4 bits (67), Expect = 8.7
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 929 EENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGTAT 988
EE WW K + +R KCG YL +TL + +LE NV +G +
Sbjct: 1509 EEEFIDWWSKFFASIGEREKCGS-----YLEKDFDTLKVYDTQLE-----NVEAFEGLSD 1558
Query: 989 FFLPYLLY 996
F + LY
Sbjct: 1559 FCNTFKLY 1566
>gi|195976758 dysferlin isoform 11 [Homo sapiens]
Length = 2101
Score = 30.4 bits (67), Expect = 8.7
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 929 EENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGTAT 988
EE WW K + +R KCG YL +TL + +LE NV +G +
Sbjct: 1492 EEEFIDWWSKFFASIGEREKCGS-----YLEKDFDTLKVYDTQLE-----NVEAFEGLSD 1541
Query: 989 FFLPYLLY 996
F + LY
Sbjct: 1542 FCNTFKLY 1549
>gi|195976756 dysferlin isoform 10 [Homo sapiens]
Length = 2087
Score = 30.4 bits (67), Expect = 8.7
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 929 EENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGTAT 988
EE WW K + +R KCG YL +TL + +LE NV +G +
Sbjct: 1478 EEEFIDWWSKFFASIGEREKCGS-----YLEKDFDTLKVYDTQLE-----NVEAFEGLSD 1527
Query: 989 FFLPYLLY 996
F + LY
Sbjct: 1528 FCNTFKLY 1535
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,777,043
Number of Sequences: 37866
Number of extensions: 1643655
Number of successful extensions: 3705
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3702
Number of HSP's gapped (non-prelim): 20
length of query: 1004
length of database: 18,247,518
effective HSP length: 112
effective length of query: 892
effective length of database: 14,006,526
effective search space: 12493821192
effective search space used: 12493821192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.