Guide to the Human Genome
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Name: FLJ43080 Sequence: fasta or formatted (506aa) NCBI GI: 193290174
Description:

hypothetical protein LOC642987

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         27           2
 C cysteine            3.0         15           2
 D aspartate           4.0         20           2
 E glutamate           6.7         34           2
 F phenylalanine       4.5         23           2
 G glycine             4.3         22           2
 H histidine           3.6         18           1
 I isoleucine          6.1         31           2
 K lysine              6.9         35           2
 L leucine            12.8         65           2
 M methionine          2.0         10           1
 N asparagine          4.9         25           2
 P proline             2.4         12           2
 Q glutamine           4.5         23           1
 R arginine            4.2         21           1
 S serine              8.9         45           2
 T threonine           3.4         17           1
 V valine              5.9         30           2
 W tryptophan          2.0         10           1
 Y tyrosine            4.5         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC642987 
DNAH1                 0.007   dynein, axonemal, heavy chain 1 
XRCC6                 0.007   ATP-dependent DNA helicase II, 70 kDa subunit 
PTK7                  0.006   PTK7 protein tyrosine kinase 7 isoform a precursor [...
PTK7                  0.006   PTK7 protein tyrosine kinase 7 isoform d precursor [...
PTK7                  0.006   PTK7 protein tyrosine kinase 7 isoform c precursor [...
PTK7                  0.006   PTK7 protein tyrosine kinase 7 isoform b precursor [...
CEP68                 0.005   centrosomal protein 68kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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