Search of human proteins with 193211616

Search of human proteins with 193211616

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|193211616 nipsnap homolog 1 [Homo sapiens]
         (284 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|193211616 nipsnap homolog 1 [Homo sapiens]                         597   e-171
gi|4503937 nipsnap homolog 2 [Homo sapiens]                           419   e-117
gi|21361743 nipsnap homolog 3B [Homo sapiens]                          67   1e-11
gi|22267436 nipsnap homolog 3A [Homo sapiens]                          60   2e-09
gi|151301228 formin binding protein 3 [Homo sapiens]                   28   9.1  

>gi|193211616 nipsnap homolog 1 [Homo sapiens]
          Length = 284

 Score =  597 bits (1539), Expect = e-171
 Identities = 284/284 (100%), Positives = 284/284 (100%)

Query: 1   MAPRLCSISVTARRLLGGPGPRAGDVASAAAARFYSKDNEGSWFRSLFVHKVDPRKDAHS 60
           MAPRLCSISVTARRLLGGPGPRAGDVASAAAARFYSKDNEGSWFRSLFVHKVDPRKDAHS
Sbjct: 1   MAPRLCSISVTARRLLGGPGPRAGDVASAAAARFYSKDNEGSWFRSLFVHKVDPRKDAHS 60

Query: 61  TLLSKKETSNLYKIQFHNVKPEYLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQD 120
           TLLSKKETSNLYKIQFHNVKPEYLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQD
Sbjct: 61  TLLSKKETSNLYKIQFHNVKPEYLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQD 120

Query: 121 QAVHLWRFSGGYPALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRM 180
           QAVHLWRFSGGYPALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRM
Sbjct: 121 QAVHLWRFSGGYPALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRM 180

Query: 181 GPNIYELRTYKLKPGTMIEWGNNWARAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDL 240
           GPNIYELRTYKLKPGTMIEWGNNWARAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDL
Sbjct: 181 GPNIYELRTYKLKPGTMIEWGNNWARAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDL 240

Query: 241 QSREETRNAAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ 284
           QSREETRNAAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ
Sbjct: 241 QSREETRNAAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ 284


>gi|4503937 nipsnap homolog 2 [Homo sapiens]
          Length = 286

 Score =  419 bits (1077), Expect = e-117
 Identities = 188/249 (75%), Positives = 219/249 (87%)

Query: 36  SKDNEGSWFRSLFVHKVDPRKDAHSTLLSKKETSNLYKIQFHNVKPEYLDAYNSLTEAVL 95
           ++  E SW +SLFV KVDPRKDAHS LL+KKETSNLYK+QFHNVKPE L+AYN + + VL
Sbjct: 38  NRSREDSWLKSLFVRKVDPRKDAHSNLLAKKETSNLYKLQFHNVKPECLEAYNKICQEVL 97

Query: 96  PKLHLDEDYPCSLVGNWNTWYGEQDQAVHLWRFSGGYPALMDCMNKLKNNKEYLEFRRER 155
           PK+H D+ YPC+LVG WNTWYGEQDQAVHLWR+ GGYPAL + MNKL+ NKE+LEFR+ R
Sbjct: 98  PKIHEDKHYPCTLVGTWNTWYGEQDQAVHLWRYEGGYPALTEVMNKLRENKEFLEFRKAR 157

Query: 156 SQMLLSRRNQLLLEFSFWNEPQPRMGPNIYELRTYKLKPGTMIEWGNNWARAIKYRQENQ 215
           S MLLSR+NQLLLEFSFWNEP PR GPNIYELR+Y+L+PGTMIEWGN WARAI++RQ+  
Sbjct: 158 SDMLLSRKNQLLLEFSFWNEPVPRSGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQDGN 217

Query: 216 EAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVPLVRHMESRIM 275
           EAVGGFFSQIG+LY+VHHLWAY+DLQ+RE+ RNAAW K GW+E VYYTVPL++ MESRIM
Sbjct: 218 EAVGGFFSQIGQLYMVHHLWAYRDLQTREDIRNAAWHKHGWEELVYYTVPLIQEMESRIM 277

Query: 276 IPLKISPLQ 284
           IPLK SPLQ
Sbjct: 278 IPLKTSPLQ 286


>gi|21361743 nipsnap homolog 3B [Homo sapiens]
          Length = 247

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 8/216 (3%)

Query: 72  YKIQFHNVKPEYLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQDQAV-HLWRFSG 130
           Y+ + + +KP  ++A+    E +   +HL   Y   LVG W+  +G +   V H+W++  
Sbjct: 37  YEFRTYYLKPSNMNAF---MENLKKNIHLRTSYS-ELVGFWSVEFGGRTNKVFHIWKYDN 92

Query: 131 GYPALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRMGPNIYELRTY 190
            +    +    L N KE+ E     +   + ++   +     W++ +      +YEL  +
Sbjct: 93  -FAHRAEVRKALANCKEWQEQSIIPNLARIDKQETEITYLIPWSKLEKPPKEGVYELAVF 151

Query: 191 KLKPGTMIEWGNNWARAIKYRQE--NQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRN 248
           ++KPG    WG+ + RAI         + VG F ++ GEL  VH LW  +   SR   R+
Sbjct: 152 QMKPGGPALWGDAFERAINAHVNLGYTKVVGVFHTEYGELNRVHVLWWNESADSRAAGRH 211

Query: 249 AAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ 284
            +         V  +V  +   ++ ++IP   SPL+
Sbjct: 212 KSHEDPRVVAAVRESVNYLVSQQNMLLIPASFSPLK 247


>gi|22267436 nipsnap homolog 3A [Homo sapiens]
          Length = 247

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 8/216 (3%)

Query: 72  YKIQFHNVKPEYLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQDQAV-HLWRFSG 130
           Y+ + + +KP  +   N   E      HL   +   LVG W+  +G +   V H+W++  
Sbjct: 37  YEFRSYYLKPSKM---NEFLENFEKNAHLRTAHS-ELVGYWSVEFGGRMNTVFHIWKYDN 92

Query: 131 GYPALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRMGPNIYELRTY 190
            +    +    L  +KE+ E     +  L+ ++   +     W + +      +YEL T+
Sbjct: 93  -FAHRTEVRKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEGVYELATF 151

Query: 191 KLKPGTMIEWGNNWARAIKYRQE--NQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRN 248
           ++KPG    WG+ + RA+         + VG F ++ G L  VH LW  +   SR   R+
Sbjct: 152 QMKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNESADSRAAGRH 211

Query: 249 AAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ 284
            +         V  +V  +   ++ ++IP   SPL+
Sbjct: 212 KSHEDPRVVAAVRESVNYLVSQQNMLLIPTSFSPLK 247


>gi|151301228 formin binding protein 3 [Homo sapiens]
          Length = 930

 Score = 28.1 bits (61), Expect = 9.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 39  NEGSWFRSLFVHKVDPRKDAHSTLLSKKETSNLYKIQFHNVKPE 82
           +  SW +++ +   DPR  A + L  KK+  N YK+Q    + E
Sbjct: 384 SNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKE 427


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,821,774
Number of Sequences: 37866
Number of extensions: 519230
Number of successful extensions: 1140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1130
Number of HSP's gapped (non-prelim): 5
length of query: 284
length of database: 18,247,518
effective HSP length: 101
effective length of query: 183
effective length of database: 14,423,052
effective search space: 2639418516
effective search space used: 2639418516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.