Search of human proteins with 190886451

Search of human proteins with 190886451

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|190886451 leucine zipper protein 6 [Homo sapiens]
         (58 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|190886451 leucine zipper protein 6 [Homo sapiens]                  113   3e-26
gi|16933565 protocadherin 21 precursor [Homo sapiens]                  26   6.1  

>gi|190886451 leucine zipper protein 6 [Homo sapiens]
          Length = 58

 Score =  113 bits (283), Expect = 3e-26
 Identities = 58/58 (100%), Positives = 58/58 (100%)

Query: 1  IKSVISYALYQVQTGSLPVYSSVLTKSPLQLQTVIYRLIVQIQHLNIPSSSSTHSSPF 58
          IKSVISYALYQVQTGSLPVYSSVLTKSPLQLQTVIYRLIVQIQHLNIPSSSSTHSSPF
Sbjct: 1  IKSVISYALYQVQTGSLPVYSSVLTKSPLQLQTVIYRLIVQIQHLNIPSSSSTHSSPF 58


>gi|16933565 protocadherin 21 precursor [Homo sapiens]
          Length = 859

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 24  LTKSPLQLQTVIYRLIVQIQHLNIPSSSSTHSS 56
           +T+SP QLQ  +Y L VQ+  ++   S +  ++
Sbjct: 304 ITQSPAQLQREVYELHVQVTEMSPAGSPAAQAT 336


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.128    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,948,135
Number of Sequences: 37866
Number of extensions: 57303
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 2
length of query: 58
length of database: 18,247,518
effective HSP length: 31
effective length of query: 27
effective length of database: 17,073,672
effective search space: 460989144
effective search space used: 460989144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.