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Search of human proteins with 169209134
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169209134 PREDICTED: hypothetical protein [Homo sapiens]
(107 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169209134 PREDICTED: hypothetical protein [Homo sapiens] 229 5e-61
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 53 5e-08
gi|118498339 EMI domain containing 2 [Homo sapiens] 48 1e-06
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 43 5e-05
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 43 5e-05
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 42 1e-04
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 42 1e-04
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 42 1e-04
gi|11415052 retinoid X receptor, beta [Homo sapiens] 42 1e-04
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 42 1e-04
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 42 1e-04
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 42 1e-04
gi|237757312 synaptojanin 1 isoform c [Homo sapiens] 41 2e-04
gi|239754370 PREDICTED: hypothetical protein [Homo sapiens] 41 2e-04
gi|239748924 PREDICTED: hypothetical protein [Homo sapiens] 41 2e-04
gi|239742946 PREDICTED: hypothetical protein [Homo sapiens] 41 2e-04
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 41 2e-04
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 41 2e-04
gi|24497513 homeobox A3 isoform a [Homo sapiens] 41 2e-04
gi|13562112 homeobox A3 isoform a [Homo sapiens] 41 2e-04
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 40 3e-04
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 40 3e-04
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 40 4e-04
gi|157277988 phosphodiesterase 4D isoform 1 [Homo sapiens] 40 5e-04
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 40 5e-04
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 39 7e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 39 7e-04
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 39 0.001
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 39 0.001
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 39 0.001
>gi|169209134 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 229 bits (583), Expect = 5e-61
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MREKGDAQGGGVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHK 60
MREKGDAQGGGVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHK
Sbjct: 1 MREKGDAQGGGVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHK 60
Query: 61 SQNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSPGGG 107
SQNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSPGGG
Sbjct: 61 SQNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSPGGG 107
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 53.1 bits (126), Expect = 5e-08
Identities = 36/99 (36%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 6 DAQGGGVRR-----------PEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAAL 54
DA+GGG R P P PP P QP P P AP P PGPAPP + AL
Sbjct: 2 DARGGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEAL 61
Query: 55 RAPTHKSQNFPQLRQLSCALTVRLPGLPRGPSWDNSSPS 93
P + P+ R S + PG P S SP+
Sbjct: 62 -PPEAADEGGPRGRLRSRDSSCGRPGTPGAASTAKGSPN 99
Score = 31.2 bits (69), Expect = 0.19
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 12 VRRPEV-PAPPGDPS-VQPAPETPAAPAPPPGPAPPSNRRGL-AALRAP-THKSQNFP-- 65
V RP V P G P V+ P PA A PGP PP++ G A+ RAP T P
Sbjct: 742 VARPLVGPLALGSPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAA 801
Query: 66 ----------QLRQLSCALTVRLPGLPRGPSWDNSSPSP 94
+L + S L+ P LP G +S P
Sbjct: 802 PLAGPALPARRLSRASRPLSASQPSLPHGAPGPAASTRP 840
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 48.1 bits (113), Expect = 1e-06
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 3 EKGDAQGGGVRRPEVPAPPGDPSV--QPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHK 60
EKG A G+ P P P G P +P P P PA PGP+P S + L +L+ PT K
Sbjct: 225 EKGPAGPPGLLGP--PGPRGLPGEMGRPGPPGPPGPAGNPGPSPNSPQGALYSLQPPTDK 282
Query: 61 SQNFPQLRQ-LSCALTVRLPGLPRGPSWDNSSPSPR 95
+L + + +PG PRGP P PR
Sbjct: 283 DNGDSRLASAIVDTVLAGVPG-PRGPPGPPGPPGPR 317
Score = 29.6 bits (65), Expect = 0.55
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 17 VPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALR 55
VP P G P P P P PPGP +GLA R
Sbjct: 301 VPGPRGPPG----PPGPPGPRGPPGPPGTPGSQGLAGER 335
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 43.1 bits (100), Expect = 5e-05
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 12 VRRPEVPAPPGDPSVQPAPETP--AAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQLRQ 69
+ R VP PP + P P TP +A + P P PP +R G L + + P+L Q
Sbjct: 277 IHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQ 336
Query: 70 LSCALTVRLPGLPR-GPSWDNSSPSPRRKTIGGRSPGG 106
+ +L+ P LP G S P R R P G
Sbjct: 337 RNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPG 374
Score = 31.2 bits (69), Expect = 0.19
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 4 KGDAQGGGVRR--PEVPAPP--GDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTH 59
+G A GGG R P + P P + P P PPP P P NR + P
Sbjct: 226 RGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPP 285
Query: 60 KSQNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSP 94
QN +P PR PS + +P P
Sbjct: 286 PPQNNKP----------PVPSTPR-PSASSQAPPP 309
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 14 RPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRG 50
R V +P P P+ P+A APPP P S R G
Sbjct: 404 RSGVDSPRSGPRPPLPPDRPSAGAPPPPPPSTSIRNG 440
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 15 PEVPAP----PGDPSVQPAPETPAAPAPPPGPAPPSNRRGLA 52
P P P P + P P P P+P P P P RG A
Sbjct: 188 PSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTA 229
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 13 RRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAP 57
R +P PP + P + P P P P PP +R G + P
Sbjct: 353 RSGPLPPPPSERPPPPVRDPPGRSGPLP-PPPPVSRNGSTSRALP 396
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 43.1 bits (100), Expect = 5e-05
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 12 VRRPEVPAPPGDPSVQPAPETP--AAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQLRQ 69
+ R VP PP + P P TP +A + P P PP +R G L + + P+L Q
Sbjct: 277 IHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQ 336
Query: 70 LSCALTVRLPGLPR-GPSWDNSSPSPRRKTIGGRSPGG 106
+ +L+ P LP G S P R R P G
Sbjct: 337 RNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPG 374
Score = 31.2 bits (69), Expect = 0.19
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 4 KGDAQGGGVRR--PEVPAPP--GDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTH 59
+G A GGG R P + P P + P P PPP P P NR + P
Sbjct: 226 RGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPP 285
Query: 60 KSQNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSP 94
QN +P PR PS + +P P
Sbjct: 286 PPQNNKP----------PVPSTPR-PSASSQAPPP 309
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 14 RPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRG 50
R V +P P P+ P+A APPP P S R G
Sbjct: 404 RSGVDSPRSGPRPPLPPDRPSAGAPPPPPPSTSIRNG 440
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 15 PEVPAP----PGDPSVQPAPETPAAPAPPPGPAPPSNRRGLA 52
P P P P + P P P P+P P P P RG A
Sbjct: 188 PSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTA 229
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 13 RRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAP 57
R +P PP + P + P P P P PP +R G + P
Sbjct: 353 RSGPLPPPPSERPPPPVRDPPGRSGPLP-PPPPVSRNGSTSRALP 396
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
Length = 170
Score = 42.0 bits (97), Expect = 1e-04
Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 22/84 (26%)
Query: 13 RRPEVPAPPGDPSVQPAPETPAAPAP---PPGPAPPSNRRGLAALRAPTHKSQNFPQLRQ 69
R P PAPP + + PAP P AP P P GP P GL L P
Sbjct: 39 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAG---------- 88
Query: 70 LSCALTVRLPGLPRGPSWDNSSPS 93
PG P GP ++P+
Sbjct: 89 ---------PGEPEGPGDPAAAPA 103
>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]
Length = 177
Score = 42.0 bits (97), Expect = 1e-04
Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 22/84 (26%)
Query: 13 RRPEVPAPPGDPSVQPAPETPAAPAP---PPGPAPPSNRRGLAALRAPTHKSQNFPQLRQ 69
R P PAPP + + PAP P AP P P GP P GL L P
Sbjct: 39 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAG---------- 88
Query: 70 LSCALTVRLPGLPRGPSWDNSSPS 93
PG P GP ++P+
Sbjct: 89 ---------PGEPEGPGDPAAAPA 103
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
Length = 204
Score = 42.0 bits (97), Expect = 1e-04
Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 22/84 (26%)
Query: 13 RRPEVPAPPGDPSVQPAPETPAAPAP---PPGPAPPSNRRGLAALRAPTHKSQNFPQLRQ 69
R P PAPP + + PAP P AP P P GP P GL L P
Sbjct: 39 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAG---------- 88
Query: 70 LSCALTVRLPGLPRGPSWDNSSPS 93
PG P GP ++P+
Sbjct: 89 ---------PGEPEGPGDPAAAPA 103
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 41.6 bits (96), Expect = 1e-04
Identities = 34/105 (32%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 11 GVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPP--------SNRRGLAALRAPTHKSQ 62
GV P P PP PS P+ AP PPP P PP S+ G L P
Sbjct: 94 GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGF 153
Query: 63 NFPQLRQLSCALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSPGGG 107
+ P + TV LPG GP D P + + P GG
Sbjct: 154 SGP-VSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGG 197
Score = 33.1 bits (74), Expect = 0.050
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 21 PGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQLRQLSCALTVRL-- 78
P S P P+ P+PP P PPS L AP P L ++ +
Sbjct: 83 PDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGS 142
Query: 79 PGL--PRGPSWDNSSPSPR-RKTIGGRSPGGG 107
PGL P P + SP+ T+ PGGG
Sbjct: 143 PGLPPPAPPGFSGPVSSPQINSTVS--LPGGG 172
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 41.6 bits (96), Expect = 1e-04
Identities = 46/126 (36%), Positives = 58/126 (46%), Gaps = 34/126 (26%)
Query: 2 REKGDAQGGGVR----RPEV-----PAPP-------GDPSVQPA-PETPAAPAPPPGP-A 43
R + Q GG R RP V P PP G P QP P+ AAPAP PGP A
Sbjct: 156 RPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTA 215
Query: 44 PPSNRRGLAALRAPTHKSQNFPQLRQLS----CALTVRLPGLPRGPSWDNSSPSPRRKTI 99
PP+ R P ++S+ P+ R S A LP LP GP+ + P+P +
Sbjct: 216 PPA--------RPPAYESREGPRGRAESRGSGPAQPAHLP-LP-GPAHSPAPPAPELRE- 264
Query: 100 GGRSPG 105
GR+PG
Sbjct: 265 -GRAPG 269
Score = 26.9 bits (58), Expect = 3.5
Identities = 32/120 (26%), Positives = 41/120 (34%), Gaps = 29/120 (24%)
Query: 2 REKGDAQGGGVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHKS 61
R + +++G G P P+ P P +PAPP G A R P +
Sbjct: 230 RGRAESRGSG---------PAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPRE 280
Query: 62 QNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSP--------------RRKTIGGRSPGGG 107
PQ + S TV GL RG S P RR+ GG G G
Sbjct: 281 ---PQAAEESGCATV---GLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEG 334
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 41.6 bits (96), Expect = 1e-04
Identities = 46/126 (36%), Positives = 58/126 (46%), Gaps = 34/126 (26%)
Query: 2 REKGDAQGGGVR----RPEV-----PAPP-------GDPSVQPA-PETPAAPAPPPGP-A 43
R + Q GG R RP V P PP G P QP P+ AAPAP PGP A
Sbjct: 156 RPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTA 215
Query: 44 PPSNRRGLAALRAPTHKSQNFPQLRQLS----CALTVRLPGLPRGPSWDNSSPSPRRKTI 99
PP+ R P ++S+ P+ R S A LP LP GP+ + P+P +
Sbjct: 216 PPA--------RPPAYESREGPRGRAESRGSGPAQPAHLP-LP-GPAHSPAPPAPELRE- 264
Query: 100 GGRSPG 105
GR+PG
Sbjct: 265 -GRAPG 269
Score = 26.9 bits (58), Expect = 3.5
Identities = 32/120 (26%), Positives = 41/120 (34%), Gaps = 29/120 (24%)
Query: 2 REKGDAQGGGVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHKS 61
R + +++G G P P+ P P +PAPP G A R P +
Sbjct: 230 RGRAESRGSG---------PAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPRE 280
Query: 62 QNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSP--------------RRKTIGGRSPGGG 107
PQ + S TV GL RG S P RR+ GG G G
Sbjct: 281 ---PQAAEESGCATV---GLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEG 334
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 41.6 bits (96), Expect = 1e-04
Identities = 46/126 (36%), Positives = 58/126 (46%), Gaps = 34/126 (26%)
Query: 2 REKGDAQGGGVR----RPEV-----PAPP-------GDPSVQPA-PETPAAPAPPPGP-A 43
R + Q GG R RP V P PP G P QP P+ AAPAP PGP A
Sbjct: 156 RPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTA 215
Query: 44 PPSNRRGLAALRAPTHKSQNFPQLRQLS----CALTVRLPGLPRGPSWDNSSPSPRRKTI 99
PP+ R P ++S+ P+ R S A LP LP GP+ + P+P +
Sbjct: 216 PPA--------RPPAYESREGPRGRAESRGSGPAQPAHLP-LP-GPAHSPAPPAPELRE- 264
Query: 100 GGRSPG 105
GR+PG
Sbjct: 265 -GRAPG 269
Score = 26.9 bits (58), Expect = 3.5
Identities = 32/120 (26%), Positives = 41/120 (34%), Gaps = 29/120 (24%)
Query: 2 REKGDAQGGGVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHKS 61
R + +++G G P P+ P P +PAPP G A R P +
Sbjct: 230 RGRAESRGSG---------PAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPRE 280
Query: 62 QNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSP--------------RRKTIGGRSPGGG 107
PQ + S TV GL RG S P RR+ GG G G
Sbjct: 281 ---PQAAEESGCATV---GLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEG 334
>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
Length = 1295
Score = 41.2 bits (95), Expect = 2e-04
Identities = 34/104 (32%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 6 DAQGGGVRRPEVPAPPGDPSVQPAPET---PAAPAPPPGPAPPSNRRGLAALRAPTHKSQ 62
DAQ + PA P +P P P P PAPP P PPS R APT K
Sbjct: 1087 DAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGARS----PAPTRKEF 1142
Query: 63 NFPQLRQLSCALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSPGG 106
P + PG R + S PSP + + G P G
Sbjct: 1143 GAP-----------KSPGTTRKDNIGRSQPSP-QAGLAGPGPAG 1174
Score = 30.8 bits (68), Expect = 0.25
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 17/88 (19%)
Query: 21 PGDPSVQPAP--ETPAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQLRQLSCALTVRL 78
PG PS Q +P PA P P PA P + R ++ P R
Sbjct: 1076 PGPPSAQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQR---------- 1125
Query: 79 PGLPRGPSWDNSSPSPRRKTIGG-RSPG 105
P P G SP+P RK G +SPG
Sbjct: 1126 PPPPSGA----RSPAPTRKEFGAPKSPG 1149
>gi|239754370 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 41.2 bits (95), Expect = 2e-04
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Query: 15 PEVPAPPG-----DPSVQP--APETPAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQL 67
P+ PAP DPS++ AP PA PAPPP PAPPS + P ++ PQ
Sbjct: 148 PDEPAPAARTRRRDPSLRRTLAPCAPAWPAPPPCPAPPSRSK-------PALAARQQPQR 200
Query: 68 RQLSCALTVRLP 79
R + A+ + P
Sbjct: 201 RAWAAAVATQCP 212
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 12 VRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAAL-------RAPTHK 60
+RR P P P+ P P P+ P RR AA RAPT +
Sbjct: 164 LRRTLAPCAPAWPAPPPCPAPPSRSKPALAARQQPQRRAWAAAVATQCPHRAPTQQ 219
>gi|239748924 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 41.2 bits (95), Expect = 2e-04
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Query: 15 PEVPAPPG-----DPSVQP--APETPAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQL 67
P+ PAP DPS++ AP PA PAPPP PAPPS + P ++ PQ
Sbjct: 148 PDEPAPAARTRRRDPSLRRTLAPCAPAWPAPPPCPAPPSRSK-------PALAARQQPQR 200
Query: 68 RQLSCALTVRLP 79
R + A+ + P
Sbjct: 201 RAWAAAVATQCP 212
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 12 VRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAAL-------RAPTHK 60
+RR P P P+ P P P+ P RR AA RAPT +
Sbjct: 164 LRRTLAPCAPAWPAPPPCPAPPSRSKPALAARQQPQRRAWAAAVATQCPHRAPTQQ 219
>gi|239742946 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 41.2 bits (95), Expect = 2e-04
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Query: 15 PEVPAPPG-----DPSVQP--APETPAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQL 67
P+ PAP DPS++ AP PA PAPPP PAPPS + P ++ PQ
Sbjct: 148 PDEPAPAARTRRRDPSLRRTLAPCAPAWPAPPPCPAPPSRSK-------PALAARQQPQR 200
Query: 68 RQLSCALTVRLP 79
R + A+ + P
Sbjct: 201 RAWAAAVATQCP 212
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 12 VRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAAL-------RAPTHK 60
+RR P P P+ P P P+ P RR AA RAPT +
Sbjct: 164 LRRTLAPCAPAWPAPPPCPAPPSRSKPALAARQQPQRRAWAAAVATQCPHRAPTQQ 219
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 41.2 bits (95), Expect = 2e-04
Identities = 32/90 (35%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 16 EVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQLRQLSCALT 75
E+P PP PAP P AP+PPP PA S R L LRAP + + L+ LT
Sbjct: 617 ELPPPP------PAPPPPPAPSPPPAPATSSRRPLL--LRAPQF-TPSEAHLKIYESVLT 667
Query: 76 VRLPGLPRGPS-----WDNSSPSPRRKTIG 100
G P P D+S P + +G
Sbjct: 668 PPPLGAPEAPEPEPPPADDSPAEPEPRAVG 697
Score = 38.1 bits (87), Expect = 0.002
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 12 VRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAP-PSNRRGLAALRAPTHKSQNFPQLRQL 70
+R P +PP P P P AP PP P P P RR + LR PT +
Sbjct: 563 LRPPITTSPPVPQEPAPVPSPPRAPTPPSTPVPLPEKRRSI--LREPTFR---------- 610
Query: 71 SCALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSP 104
+LT LP P P + P R P
Sbjct: 611 WTSLTRELPPPPPAPPPPPAPSPPPAPATSSRRP 644
Score = 30.4 bits (67), Expect = 0.32
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 23 DPSVQPAPETPAAPAPPPGPAPPS 46
+ + P P TP AP+PPP PPS
Sbjct: 398 EAKLPPPPLTPPAPSPPPPLPPPS 421
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 15 PEVPAPPGDPSVQPAPETPAAPAPPPGPAPP 45
P P P PS P P P P PPP +PP
Sbjct: 411 PSPPPPLPPPSTSPPP--PLCPPPPPPVSPP 439
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 15 PEVPAPPGD----PSVQPAPETPAAPAPPPGPAPP 45
P P PP P + P P P +P P P P PP
Sbjct: 413 PPPPLPPPSTSPPPPLCPPPPPPVSPPPLPSPPPP 447
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 12 VRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHKSQ 62
V P +P+PP P+ + E+P PP PA S +RG R P SQ
Sbjct: 436 VSPPPLPSPPPPPAQEEQEESP----PPVVPATCSRKRG----RPPLTPSQ 478
Score = 28.9 bits (63), Expect = 0.93
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 16 EVPAPPGDPSVQPAPETPAAPAPPPGPAPP 45
++P PP P PAP +P P PPP +PP
Sbjct: 400 KLPPPPLTP---PAP-SPPPPLPPPSTSPP 425
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 18 PAPPGDPSVQPAPETPAAPAPPPGPA 43
P PP P P P P+PPP PA
Sbjct: 424 PPPPLCPPPPPPVSPPPLPSPPPPPA 449
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 25/107 (23%)
Query: 12 VRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQLRQLS 71
+RR + P P + +P+ + PP PA P R+ A + A
Sbjct: 197 LRRAQAPQAPRSRACEPSTPRRSRGRPPGRPAGPCRRKQQAVVVA--------------E 242
Query: 72 CALTVRLPGLP--------RGPSW---DNSSPSPRRKTIGGRSPGGG 107
A+T+ P P + SW + P P GG+S GG
Sbjct: 243 AAVTIPKPEPPPPVVPVKHQTGSWKCKEGPGPGPGTPRRGGQSSRGG 289
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 15 PEVPAPPGDPSVQPAPETPAAPAPPPGPAPPS 46
P P+PP P + P +P P PP P P S
Sbjct: 408 PPAPSPP--PPLPPPSTSPPPPLCPPPPPPVS 437
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 15 PEVPAPPGDPSVQPAPETPAAPAPPPGPAPP 45
P P P P P P T +P PP P PP
Sbjct: 405 PLTPPAPSPPPPLPPPST--SPPPPLCPPPP 433
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 41.2 bits (95), Expect = 2e-04
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 9 GGGVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPP------SNRRGLAALRAPTHKSQ 62
GGG + APP P P P TP+ P PPP P PP + G H S+
Sbjct: 139 GGGSSGAQPSAPP--PPAPPLPPTPSPPPPPPPPPPPALSGYTTTNSGGGGSSGKGH-SR 195
Query: 63 NFPQLRQLSC-ALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSPG 105
+F R LS A + G P G + + SP+ S G
Sbjct: 196 DFVLRRDLSATAPAAAMHGAPLGGEQRSGTGSPQHPAPPPHSAG 239
Score = 30.4 bits (67), Expect = 0.32
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 21/73 (28%)
Query: 5 GDAQGGGVRRPEVPAPP--------------------GDPSVQPA-PETPAAPAPPPGPA 43
G Q G P+ PAPP G P++ PA +TP AP P P
Sbjct: 218 GGEQRSGTGSPQHPAPPPHSAGMFISASGTYAGPDGSGGPALFPALHDTPGAPGGHPHPL 277
Query: 44 PPSNRRGLAALRA 56
R GLAA A
Sbjct: 278 NGQMRLGLAAAAA 290
Score = 29.6 bits (65), Expect = 0.55
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 18 PAPPGDPSVQPAPETPAAPAPPPGPAPP 45
P G QP+ P AP PP P+PP
Sbjct: 137 PCGGGSSGAQPSAPPPPAPPLPPTPSPP 164
Score = 26.9 bits (58), Expect = 3.5
Identities = 28/90 (31%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 19 APPGDPSVQPAPETPAAPAPPPGPA--PPSNRRGLAALRAPTHKSQNFPQLRQLSCAL-- 74
A PG AP P AP PPP PA P + L + P ++L C
Sbjct: 345 AGPGPHLQHHAP--PPAPPPPPAPAQHPHQHHPHLPGAAGAFLRYMRQPIKQELICKWID 402
Query: 75 TVRLPGLPRGPSWDNSSPSPRRKTIGGRSP 104
L GLP P P P GG P
Sbjct: 403 PDELAGLPPPP--PPPPPPPPPPPAGGAKP 430
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 40.8 bits (94), Expect = 2e-04
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 15 PEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRG---------LAALRAPTHKSQNFP 65
P P PP P+ QP TPAAP PP +PP N L +PT Q FP
Sbjct: 99 PPAPQPP-QPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFP 157
Query: 66 QLRQ 69
+++
Sbjct: 158 WMKE 161
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 15 PEVPAPPGDPSVQPAPETPAAPAP-PPGPAP 44
P P G+P + P P A PAP PP PAP
Sbjct: 79 PSQPPSLGEPPLHPPPPQAAPPAPQPPQPAP 109
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 40.8 bits (94), Expect = 2e-04
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 15 PEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRG---------LAALRAPTHKSQNFP 65
P P PP P+ QP TPAAP PP +PP N L +PT Q FP
Sbjct: 99 PPAPQPP-QPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFP 157
Query: 66 QLRQ 69
+++
Sbjct: 158 WMKE 161
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 15 PEVPAPPGDPSVQPAPETPAAPAP-PPGPAP 44
P P G+P + P P A PAP PP PAP
Sbjct: 79 PSQPPSLGEPPLHPPPPQAAPPAPQPPQPAP 109
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 40.4 bits (93), Expect = 3e-04
Identities = 37/104 (35%), Positives = 43/104 (41%), Gaps = 22/104 (21%)
Query: 13 RRPEVPAPPGDPSVQPA-PETPAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQLRQLS 71
R P P PP P PA P PAAP P G A P RR +F Q + S
Sbjct: 95 RPPPPPPPPAPPRPPPAAPSPPAAPGPRGGGASPGARR------------SDFLQ-KTGS 141
Query: 72 CALTVRLPGLPRGP-----SWDNSSPSPR---RKTIGGRSPGGG 107
+ TV GL RG S +S+P PR + G PG G
Sbjct: 142 NSFTVHPRGLHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSG 185
Score = 38.5 bits (88), Expect = 0.001
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 2 REKGDAQGGGVRRPEVPAPPGDPSVQPAPE--TPAA-PAPPPGPAPPSNRRGLAA 53
R G G G +P+V + GDPS+ P P TP+A PA PP A PS R+ ++A
Sbjct: 176 RLAGSPPGSGQWKPKVES--GDPSLHPPPSPGTPSATPASPPASATPSQRQCVSA 228
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 40.4 bits (93), Expect = 3e-04
Identities = 37/104 (35%), Positives = 43/104 (41%), Gaps = 22/104 (21%)
Query: 13 RRPEVPAPPGDPSVQPA-PETPAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQLRQLS 71
R P P PP P PA P PAAP P G A P RR +F Q + S
Sbjct: 95 RPPPPPPPPAPPRPPPAAPSPPAAPGPRGGGASPGARR------------SDFLQ-KTGS 141
Query: 72 CALTVRLPGLPRGP-----SWDNSSPSPR---RKTIGGRSPGGG 107
+ TV GL RG S +S+P PR + G PG G
Sbjct: 142 NSFTVHPRGLHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSG 185
Score = 38.5 bits (88), Expect = 0.001
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 2 REKGDAQGGGVRRPEVPAPPGDPSVQPAPE--TPAA-PAPPPGPAPPSNRRGLAA 53
R G G G +P+V + GDPS+ P P TP+A PA PP A PS R+ ++A
Sbjct: 176 RLAGSPPGSGQWKPKVES--GDPSLHPPPSPGTPSATPASPPASATPSQRQCVSA 228
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 40.0 bits (92), Expect = 4e-04
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 15 PEVPAPPGDPSVQPAPETPAAPA--PPPGPAPPSNRRGLAALRAPTHKSQNFPQLRQLSC 72
P VP P G P PAP P+ P+ PP GP P G + FP+L +
Sbjct: 73 PSVP-PTGPPPGPPAPFPPSGPSCPPPGGPYPAPTVPGPGPTGPYPTPNMPFPELPRPYG 131
Query: 73 ALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSP 104
A T P GP W + S P +GG+ P
Sbjct: 132 APTDPAAAGPLGP-WGSMSSGPWAPGMGGQYP 162
Score = 29.3 bits (64), Expect = 0.71
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 9 GGGVRRPEVPAPPGDPSVQPAPETPAAP-APPP---GPAPPSNRRGLAALRAPT 58
GG P +P P P PAP P AP A PP G PP A APT
Sbjct: 158 GGQYPTPNMPYP--SPGPYPAPPPPQAPGAAPPVPWGTVPPGAWGPPAPYPAPT 209
>gi|157277988 phosphodiesterase 4D isoform 1 [Homo sapiens]
Length = 809
Score = 39.7 bits (91), Expect = 5e-04
Identities = 37/108 (34%), Positives = 43/108 (39%), Gaps = 24/108 (22%)
Query: 20 PPGDPSVQPAPETPAAPAPPPG----PAPPSNRRGLAALRAPT----HKSQNFPQLRQLS 71
PP PS QP P+ P P PPP P PP RG A T H+ + + R L
Sbjct: 59 PPPPPSPQPQPQCPLQPPPPPPLPPPPPPPGAARGRYASSGATGRVRHRGYSDTE-RYLY 117
Query: 72 CAL---------TVRLPGLPRG-PSWDNSSPSPRR-----KTIGGRSP 104
C T PGL + SW +S RR T GRSP
Sbjct: 118 CRAMDRTSYAVETGHRPGLKKSRMSWPSSFQGLRRFDVDNGTSAGRSP 165
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 39.7 bits (91), Expect = 5e-04
Identities = 33/114 (28%), Positives = 43/114 (37%), Gaps = 10/114 (8%)
Query: 2 REKGDAQGGGVRRPEVPAPPGDPSVQP-----APETPAAPAPPPGPAPPSNRRGLAALRA 56
+ +G GG + P PPG P P P+ P P P GP P + + +A R+
Sbjct: 179 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSA-RS 237
Query: 57 PTHKSQNFPQLRQLSCALTVRLPGLPRGPSWDNSS----PSPRRKTIGGRSPGG 106
P K Q P PG P+GP + P P K G GG
Sbjct: 238 PPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGG 291
Score = 37.7 bits (86), Expect = 0.002
Identities = 31/109 (28%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 2 REKGDAQGGGVRRPEVPAPPGDPSVQP-----APETPAAPAPPPGPAPPSNRRGLAALRA 56
+ +G GG + P PPG P P P+ P P P GP P + + ++ R+
Sbjct: 117 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSS-RS 175
Query: 57 PTHKSQNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSPG 105
P K Q P PG P+GP P K G PG
Sbjct: 176 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNKPQGPPPPG 219
Score = 35.8 bits (81), Expect = 0.008
Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 12/109 (11%)
Query: 2 REKGDAQGGGVRRPEVPAPPGDPSVQP-----APETPAAPAPPPGPAPPSNRRGLAALRA 56
+ +G GG + P PPG P P P+ P P P GP P ++ + R+
Sbjct: 56 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKS--RSPRS 113
Query: 57 PTHKSQNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSPG 105
P K Q P PG P+GP P K G PG
Sbjct: 114 PPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQGGNKPQGPPPPG 157
Score = 34.3 bits (77), Expect = 0.022
Identities = 33/110 (30%), Positives = 38/110 (34%), Gaps = 20/110 (18%)
Query: 5 GDAQG----GGVRRPEVPAPPGDPSVQP--APETPAAPAPPPG--PAPPSNRRGLAALRA 56
G+ QG GG + P+PPG P P P P PPPG PP
Sbjct: 34 GNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 93
Query: 57 PTHKSQNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSPGG 106
P K Q P S + PR P P P+ GG P G
Sbjct: 94 PPGKPQGPPPQGDKSRS--------PRSPPGKPQGPPPQ----GGNQPQG 131
Score = 33.1 bits (74), Expect = 0.050
Identities = 28/106 (26%), Positives = 34/106 (32%), Gaps = 26/106 (24%)
Query: 14 RPEVPAPPGDPSVQPAPETPAAPAPPP--------GPAPPSNRRGLAALRAPTHKSQNFP 65
+P+ P P G Q P P P PP GP PP +G +S P
Sbjct: 241 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSP 300
Query: 66 QLRQLSCALTVRLPGLPRGP-----SWDNSSPSPRRKTIGGRSPGG 106
PG P+GP + P P K G GG
Sbjct: 301 -------------PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 333
Score = 32.0 bits (71), Expect = 0.11
Identities = 28/106 (26%), Positives = 34/106 (32%), Gaps = 26/106 (24%)
Query: 14 RPEVPAPPGDPSVQPAPETPAAPAPPP--------GPAPPSNRRGLAALRAPTHKSQNFP 65
+P+ P P G Q P P P PP GP PP +G +S P
Sbjct: 117 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSP 176
Query: 66 QLRQLSCALTVRLPGLPRGP-----SWDNSSPSPRRKTIGGRSPGG 106
PG P+GP + P P K G GG
Sbjct: 177 -------------PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 209
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 17/104 (16%)
Query: 2 REKGDAQGGGVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHKS 61
+ +G GG + +PPG P P PPP P P + P +
Sbjct: 282 KPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKP---------QGPPPQG 332
Query: 62 QNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSPG 105
N PQ PG P+GP S S ++ G+ G
Sbjct: 333 GNKPQ--------GPPPPGKPQGPPPQGGSKSRSARSPPGKPQG 368
Score = 31.2 bits (69), Expect = 0.19
Identities = 32/110 (29%), Positives = 37/110 (33%), Gaps = 34/110 (30%)
Query: 14 RPEVPAPPGDPSVQPAPETPAAP------------APPPGPAPPSNRRGLAALRAPTHKS 61
+P+ P P GD Q A P P PPP P P + P +
Sbjct: 220 KPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKP---------QGPPPQG 270
Query: 62 QNFPQLRQLSCALTVRLPGLPRGP-----SWDNSSPSPRRKTIGGRSPGG 106
N PQ PG P+GP S SS SP K G GG
Sbjct: 271 GNKPQ--------GPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGG 312
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 2 REKGDAQGGGVRRPEVPAPPGDPSVQPAPE--TPAAPAPPPGPAP 44
+ +G GG + +PPG P P E P P PP G P
Sbjct: 344 KPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNP 388
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 14 RPEVPAPPGD--PSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQ 66
+P+ P P G P P P P P P G S R + P + N PQ
Sbjct: 324 KPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQ 378
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 9 GGGVRRPEVPAPPGDPSVQPAPETPAAPAPPP 40
GG ++P+ P P G P P P P+ PP
Sbjct: 385 GGNPQQPQAP-PAGQPQGPPRPPQGGRPSRPP 415
Score = 26.2 bits (56), Expect = 6.1
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 2 REKGDAQGGGVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRR 49
+ +G Q G P+ P PP + Q P+ P A P P PP R
Sbjct: 365 KPQGPPQQEG-NNPQGPPPPAGGNPQQ-PQAPPAGQPQGPPRPPQGGR 410
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 39.3 bits (90), Expect = 7e-04
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 13 RRPEVPAPPGDPSVQPAP--ETPAAPAP-PPGPAPPSNRRGLAALRAPTHKSQNFPQLRQ 69
+ P APP PAP + PA PAP PA P+ R +A A K+ P Q
Sbjct: 441 KAPAASAPPRKAPAVPAPSQKAPAVPAPSQKAPAIPAPSRKASAASASPRKASAVPAPPQ 500
Query: 70 LSCALTVRLPGLPRGPSWDNSSPSPRRKTI 99
+ + + P +P P S +P++K++
Sbjct: 501 KTPPPSQKAPSVPTIPQKAVSPTAPKKKSL 530
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 39.3 bits (90), Expect = 7e-04
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 11 GVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRR 49
G P PA P P+ PAP PAA PPP PAP + R
Sbjct: 245 GAAAPPAPAAPSPPAA-PAPAAPAAAPPPPPPAPATLAR 282
Score = 36.2 bits (82), Expect = 0.006
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 7 AQGGGVRRPEVPA-----PPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHKS 61
A+G PE P P G +P P +P P P GPAPP+ A LR P S
Sbjct: 79 AEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPA-----AKLRPPPEGS 133
Query: 62 QNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSPGGG 107
+ A+ P GP+ + + G PG G
Sbjct: 134 AGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPG 179
Score = 33.5 bits (75), Expect = 0.038
Identities = 27/89 (30%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 7 AQGGGVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGL--AALRAPTHKSQNF 64
A G G P AP P PA P P PPS RR L A P K +
Sbjct: 70 AAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPP 129
Query: 65 PQLRQLSCALTVRLPGLPRGPSWDNSSPS 93
P+ SCA + GP + P+
Sbjct: 130 PEGSAGSCAPVPAAAAVAAGPEPAPAGPA 158
Score = 30.4 bits (67), Expect = 0.32
Identities = 26/88 (29%), Positives = 30/88 (34%), Gaps = 8/88 (9%)
Query: 18 PAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQLRQLSCALTVR 77
PA PG P AAP P P+PP+ A AP + A R
Sbjct: 231 PAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPP--------APATLAR 282
Query: 78 LPGLPRGPSWDNSSPSPRRKTIGGRSPG 105
PG P GP + P G S G
Sbjct: 283 PPGHPAGPPTAAPAVPPPAAAQNGGSAG 310
Score = 29.6 bits (65), Expect = 0.55
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 18/108 (16%)
Query: 2 REKGDAQGGGVRRPEVPAPPGDPSVQPAPETPAAPAPPP---GPAPPSNRRG---LAALR 55
R G G P VP P + Q AAPAP P GPA S + G AA
Sbjct: 282 RPPGHPAGPPTAAPAVPPPA---AAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAP 338
Query: 56 APTHKSQNFPQLRQLS--CALTVRLPG-------LPRGPSWDNSSPSP 94
AP K+++ ++ Q + A T+ G + GP+ + PSP
Sbjct: 339 APGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSP 386
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 15 PEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAP 57
P PA P PA AAPA PP PA N A AP
Sbjct: 274 PPAPATLARPPGHPAGPPTAAPAVPP-PAAAQNGGSAGAAPAP 315
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 18 PAPPGDPSVQPAPETPAAPAPPPGPAP 44
PA P P+ A A P P PGP P
Sbjct: 154 PAGPAKPAGPAALAARAGPGPGPGPGP 180
Score = 26.2 bits (56), Expect = 6.1
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 5 GDAQGGGVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTH 59
G A+ G A PG P P P P P GP G AAL H
Sbjct: 156 GPAKPAGPAALAARAGPG-PGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHH 209
Score = 26.2 bits (56), Expect = 6.1
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 24 PSVQPAPETPAAPAPPPGPAPPSN-RRGLAAL------RAPTHKSQNFPQLRQLSCALTV 76
P++Q A +PAA PPP P P+ +G A R PT + + L
Sbjct: 377 PTMQGALPSPAA-VPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGI-RATLTPTVLAP 434
Query: 77 RLPGLPRGPS 86
RLP P+ P+
Sbjct: 435 RLPQPPQNPT 444
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 38.9 bits (89), Expect = 0.001
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 2 REKGDAQGGGVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHKS 61
R++G G +P +P P+ QP P P A PG A ++R LR+ +
Sbjct: 185 RQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASRE--PRLRSRAARP 242
Query: 62 QNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSPGGG 107
P LS A R G P GP + K R+PGGG
Sbjct: 243 PPAPGPGALSRASRSRAAGRP-GPGFHGG-----EKAAAPRAPGGG 282
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 38.9 bits (89), Expect = 0.001
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 24/108 (22%)
Query: 3 EKGDAQGGGVRRPEVPAPPGDPSVQPAPETPAAPAP----PPGPAPPSNRRGLAALRAPT 58
E+G+ GGG +P PPG P + P P PGP P G+
Sbjct: 1338 ERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIG------ 1391
Query: 59 HKSQNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSPGG 106
++ + P PG P GP S P P R+TI P G
Sbjct: 1392 YEGRQGP-------------PG-PPGPPGPPSFPGPHRQTISVPGPPG 1425
Score = 34.3 bits (77), Expect = 0.022
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 3 EKGDAQGGGVRRPEVPAPPGDPS-------------VQPAPETPAAPAPPPGPAPPSNRR 49
EKGD GV +P +P PPG P P PE A PGPA P
Sbjct: 1103 EKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNL 1162
Query: 50 G 50
G
Sbjct: 1163 G 1163
Score = 32.7 bits (73), Expect = 0.065
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 11 GVRRPEVPAPPGDPSV---QPAPETPAAPAP--PPGPAPPSNRRG----LAALRAPTHK 60
GV +VP P G P V + P P P P PPG P R G L AP HK
Sbjct: 924 GVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHK 982
Score = 32.3 bits (72), Expect = 0.084
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 15 PEVPAPPGDPSVQ-PAPETPAAPAPPPGPAPP 45
P P PPG PS P +T + P PP P PP
Sbjct: 1399 PGPPGPPGPPSFPGPHRQTISVPGPPGPPGPP 1430
Score = 29.6 bits (65), Expect = 0.55
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 3 EKGDAQ-GGGVRRPEVPAPPGDPSVQPAPETP----------AAPAPP--PGPAPPSNRR 49
E GDA G G+R +P PPG P P TP + P PP PG P +
Sbjct: 1240 EPGDASLGFGMRG--MPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPK 1297
Query: 50 GLAALRAPTHKSQNFP 65
G P FP
Sbjct: 1298 GAKGEVGPPGPPGQFP 1313
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 5 GDAQGGGVR----RPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPS 46
G + GG++ P VP PPG P +P P PP P P S
Sbjct: 746 GRVKEGGLKGQKGEPGVPGPPGRAG---PPGSPCLPGPPGLPCPVS 788
Score = 28.9 bits (63), Expect = 0.93
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 22 GDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPT 58
G PS A T A P P P+PPS R A L P+
Sbjct: 173 GIPSSPGAHTTEAGTLPAPTPSPPSLGRPWAPLTGPS 209
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 33 PAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQLRQLSCALTVRLPGLPRGPSWDNSSP 92
P PAPPP PP +S+ + ++ LPG +WD S
Sbjct: 687 PRLPAPPPVTTPPL----AGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWDGSVR 742
Query: 93 SPRRKTIGGRSPGGG 107
+P GGR GG
Sbjct: 743 TP-----GGRVKEGG 752
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 15 PEVPAPPGDPS-------VQPAPETPAAPAPPPGP 42
P +P PPG P PA +T P PPGP
Sbjct: 775 PCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGP 809
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 38.9 bits (89), Expect = 0.001
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 24/108 (22%)
Query: 3 EKGDAQGGGVRRPEVPAPPGDPSVQPAPETPAAPAP----PPGPAPPSNRRGLAALRAPT 58
E+G+ GGG +P PPG P + P P PGP P G+
Sbjct: 923 ERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIG------ 976
Query: 59 HKSQNFPQLRQLSCALTVRLPGLPRGPSWDNSSPSPRRKTIGGRSPGG 106
++ + P PG P GP S P P R+TI P G
Sbjct: 977 YEGRQGP-------------PG-PPGPPGPPSFPGPHRQTISVPGPPG 1010
Score = 34.3 bits (77), Expect = 0.022
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 3 EKGDAQGGGVRRPEVPAPPGDPS-------------VQPAPETPAAPAPPPGPAPPSNRR 49
EKGD GV +P +P PPG P P PE A PGPA P
Sbjct: 688 EKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNL 747
Query: 50 G 50
G
Sbjct: 748 G 748
Score = 32.7 bits (73), Expect = 0.065
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 11 GVRRPEVPAPPGDPSV---QPAPETPAAPAP--PPGPAPPSNRRG----LAALRAPTHK 60
GV +VP P G P V + P P P P PPG P R G L AP HK
Sbjct: 509 GVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHK 567
Score = 32.3 bits (72), Expect = 0.084
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 15 PEVPAPPGDPSVQ-PAPETPAAPAPPPGPAPP 45
P P PPG PS P +T + P PP P PP
Sbjct: 984 PGPPGPPGPPSFPGPHRQTISVPGPPGPPGPP 1015
Score = 29.6 bits (65), Expect = 0.55
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 3 EKGDAQ-GGGVRRPEVPAPPGDPSVQPAPETP----------AAPAPP--PGPAPPSNRR 49
E GDA G G+R +P PPG P P TP + P PP PG P +
Sbjct: 825 EPGDASLGFGMRG--MPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPK 882
Query: 50 GLAALRAPTHKSQNFP 65
G P FP
Sbjct: 883 GAKGEVGPPGPPGQFP 898
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 5 GDAQGGGVR----RPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPS 46
G + GG++ P VP PPG P +P P PP P P S
Sbjct: 331 GRVKEGGLKGQKGEPGVPGPPGRAG---PPGSPCLPGPPGLPCPVS 373
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 33 PAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQLRQLSCALTVRLPGLPRGPSWDNSSP 92
P PAPPP PP +S+ + ++ LPG +WD S
Sbjct: 272 PRLPAPPPVTTPPL----AGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWDGSVR 327
Query: 93 SPRRKTIGGRSPGGG 107
+P GGR GG
Sbjct: 328 TP-----GGRVKEGG 337
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 15 PEVPAPPGDPS-------VQPAPETPAAPAPPPGP 42
P +P PPG P PA +T P PPGP
Sbjct: 360 PCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGP 394
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.135 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,594,853
Number of Sequences: 37866
Number of extensions: 548449
Number of successful extensions: 20424
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 1030
Number of HSP's that attempted gapping in prelim test: 6054
Number of HSP's gapped (non-prelim): 10116
length of query: 107
length of database: 18,247,518
effective HSP length: 77
effective length of query: 30
effective length of database: 15,331,836
effective search space: 459955080
effective search space used: 459955080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.