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Search of human proteins with 169204405
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169204405 PREDICTED: hypothetical protein [Homo sapiens]
(100 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169204405 PREDICTED: hypothetical protein [Homo sapiens] 221 1e-58
gi|7662354 MON1 homolog B [Homo sapiens] 32 0.083
gi|66932929 myeloid-associated differentiation marker [Homo sapi... 29 0.92
gi|66932927 myeloid-associated differentiation marker [Homo sapi... 29 0.92
gi|66932925 myeloid-associated differentiation marker [Homo sapi... 29 0.92
gi|66932923 myeloid-associated differentiation marker [Homo sapi... 29 0.92
gi|19923903 myeloid-associated differentiation marker [Homo sapi... 29 0.92
gi|239757784 PREDICTED: hypothetical protein XP_002346335 [Homo ... 26 5.9
gi|239752293 PREDICTED: hypothetical protein [Homo sapiens] 26 5.9
gi|239746804 PREDICTED: hypothetical protein XP_002343853 [Homo ... 26 5.9
gi|210147600 tripartite motif-containing 64 [Homo sapiens] 26 7.8
gi|169202375 PREDICTED: tripartite motif-containing protein 64B-... 26 7.8
>gi|169204405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 100
Score = 221 bits (562), Expect = 1e-58
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MQLGPRARPNPVGLLRHLQGTCPVLSLLAPCWLPGAIPCWFLRVFCQERDADAYSGIRRD 60
MQLGPRARPNPVGLLRHLQGTCPVLSLLAPCWLPGAIPCWFLRVFCQERDADAYSGIRRD
Sbjct: 1 MQLGPRARPNPVGLLRHLQGTCPVLSLLAPCWLPGAIPCWFLRVFCQERDADAYSGIRRD 60
Query: 61 GSHLLLAPRLQRHFYSWSTASPANCPSKDRRHIHLPGLQH 100
GSHLLLAPRLQRHFYSWSTASPANCPSKDRRHIHLPGLQH
Sbjct: 61 GSHLLLAPRLQRHFYSWSTASPANCPSKDRRHIHLPGLQH 100
>gi|7662354 MON1 homolog B [Homo sapiens]
Length = 547
Score = 32.3 bits (72), Expect = 0.083
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 36 AIPCWFLRVFCQERDADAYSGIRR---DGSHLLLAPRLQRHFYSWSTASPANCPSKDRRH 92
A+P L + Q A + RR DG H L A R S+S AS A+ P+ +
Sbjct: 345 AMPVCLLLLGTQREAFHAMAACRRLVEDGMHALGAMRALGEAASFSNASSASAPAYSVQA 404
Query: 93 IHLPGLQH 100
+ PGL+H
Sbjct: 405 VGAPGLRH 412
>gi|66932929 myeloid-associated differentiation marker [Homo
sapiens]
Length = 322
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 5 PRARPNPVGLLRHLQ--GTCPVLSLLAP--CWLPGAIPCWFLRVFC 46
PRA P+GLLR LQ TC SL+A W G++ W + +C
Sbjct: 29 PRALTQPLGLLRLLQLVSTCVAFSLVASVGAW-TGSMGNWSMFTWC 73
>gi|66932927 myeloid-associated differentiation marker [Homo
sapiens]
Length = 322
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 5 PRARPNPVGLLRHLQ--GTCPVLSLLAP--CWLPGAIPCWFLRVFC 46
PRA P+GLLR LQ TC SL+A W G++ W + +C
Sbjct: 29 PRALTQPLGLLRLLQLVSTCVAFSLVASVGAW-TGSMGNWSMFTWC 73
>gi|66932925 myeloid-associated differentiation marker [Homo
sapiens]
Length = 322
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 5 PRARPNPVGLLRHLQ--GTCPVLSLLAP--CWLPGAIPCWFLRVFC 46
PRA P+GLLR LQ TC SL+A W G++ W + +C
Sbjct: 29 PRALTQPLGLLRLLQLVSTCVAFSLVASVGAW-TGSMGNWSMFTWC 73
>gi|66932923 myeloid-associated differentiation marker [Homo
sapiens]
Length = 322
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 5 PRARPNPVGLLRHLQ--GTCPVLSLLAP--CWLPGAIPCWFLRVFC 46
PRA P+GLLR LQ TC SL+A W G++ W + +C
Sbjct: 29 PRALTQPLGLLRLLQLVSTCVAFSLVASVGAW-TGSMGNWSMFTWC 73
>gi|19923903 myeloid-associated differentiation marker [Homo
sapiens]
Length = 322
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 5 PRARPNPVGLLRHLQ--GTCPVLSLLAP--CWLPGAIPCWFLRVFC 46
PRA P+GLLR LQ TC SL+A W G++ W + +C
Sbjct: 29 PRALTQPLGLLRLLQLVSTCVAFSLVASVGAW-TGSMGNWSMFTWC 73
>gi|239757784 PREDICTED: hypothetical protein XP_002346335 [Homo
sapiens]
Length = 97
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 5 PRARPNPVGLLRHLQGTCPVLSLLAPCWLPGAIPCWF 41
P A+P G LR P LL+ W P A P W+
Sbjct: 41 PPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAP-WY 76
>gi|239752293 PREDICTED: hypothetical protein [Homo sapiens]
Length = 97
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 5 PRARPNPVGLLRHLQGTCPVLSLLAPCWLPGAIPCWF 41
P A+P G LR P LL+ W P A P W+
Sbjct: 41 PPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAP-WY 76
>gi|239746804 PREDICTED: hypothetical protein XP_002343853 [Homo
sapiens]
Length = 97
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 5 PRARPNPVGLLRHLQGTCPVLSLLAPCWLPGAIPCWF 41
P A+P G LR P LL+ W P A P W+
Sbjct: 41 PPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAP-WY 76
>gi|210147600 tripartite motif-containing 64 [Homo sapiens]
Length = 449
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 40 WFLRVFCQERDADAYSGIRRDGSHLLLAPRLQRHFYSWSTASP 82
W L V R ADA I D L++ + H YS ST SP
Sbjct: 352 WILGVCQDSRTADANFVIDSDERFFLISSKRSNH-YSLSTNSP 393
>gi|169202375 PREDICTED: tripartite motif-containing protein
64B-like [Homo sapiens]
Length = 449
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 40 WFLRVFCQERDADAYSGIRRDGSHLLLAPRLQRHFYSWSTASP 82
W L V R ADA I D L++ + H YS ST SP
Sbjct: 352 WILGVCRDSRTADANFVIDSDERFFLISSKRSNH-YSLSTNSP 393
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.142 0.504
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,898,211
Number of Sequences: 37866
Number of extensions: 210522
Number of successful extensions: 521
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 12
length of query: 100
length of database: 18,247,518
effective HSP length: 71
effective length of query: 29
effective length of database: 15,559,032
effective search space: 451211928
effective search space used: 451211928
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.