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Search of human proteins with 169202942
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169202942 PREDICTED: hypothetical protein [Homo sapiens]
(293 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169202942 PREDICTED: hypothetical protein [Homo sapiens] 598 e-171
gi|239750092 PREDICTED: hypothetical protein [Homo sapiens] 489 e-138
gi|239744401 PREDICTED: hypothetical protein [Homo sapiens] 489 e-138
gi|126352608 elastin isoform e precursor [Homo sapiens] 36 0.046
gi|126352440 elastin isoform a precursor [Homo sapiens] 36 0.046
gi|60460897 butyrophilin-like 9 [Homo sapiens] 35 0.078
gi|126352700 elastin isoform b precursor [Homo sapiens] 32 0.51
gi|239756295 PREDICTED: hypothetical protein [Homo sapiens] 32 0.51
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 32 0.51
gi|169169054 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|169168706 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|169169649 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom... 31 1.5
gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo... 31 1.5
gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo... 31 1.5
gi|126352446 elastin isoform d precursor [Homo sapiens] 30 1.9
gi|126352322 elastin isoform c precursor [Homo sapiens] 30 1.9
gi|226442791 runt-related transcription factor 2 isoform b [Homo... 30 2.5
gi|226442783 runt-related transcription factor 2 isoform a [Homo... 30 2.5
gi|66934969 runt-related transcription factor 2 isoform c [Homo ... 30 2.5
gi|16933557 dachsous 1 precursor [Homo sapiens] 30 3.3
gi|169184025 PREDICTED: hypothetical protein [Homo sapiens] 29 4.3
gi|169179740 PREDICTED: hypothetical protein [Homo sapiens] 29 4.3
gi|169180137 PREDICTED: hypothetical protein [Homo sapiens] 29 4.3
gi|89276766 trophinin isoform 5 [Homo sapiens] 29 4.3
gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C) ... 29 5.6
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 29 5.6
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens] 29 5.6
gi|169194607 PREDICTED: hypothetical protein [Homo sapiens] 28 7.3
gi|169201944 PREDICTED: hypothetical protein [Homo sapiens] 28 7.3
>gi|169202942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 293
Score = 598 bits (1542), Expect = e-171
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS
Sbjct: 1 MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
Query: 61 RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ
Sbjct: 61 RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
Query: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL
Sbjct: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
Query: 181 KRPGGIAGGVAALLPRAAVHGESPLAGVAALGLANTLFVQEPHLVVKRGTVPPACVRATP 240
KRPGGIAGGVAALLPRAAVHGESPLAGVAALGLANTLFVQEPHLVVKRGTVPPACVRATP
Sbjct: 181 KRPGGIAGGVAALLPRAAVHGESPLAGVAALGLANTLFVQEPHLVVKRGTVPPACVRATP 240
Query: 241 ASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSICDMTRPCTFT 293
ASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSICDMTRPCTFT
Sbjct: 241 ASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSICDMTRPCTFT 293
>gi|239750092 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 489 bits (1258), Expect = e-138
Identities = 256/309 (82%), Positives = 261/309 (84%), Gaps = 16/309 (5%)
Query: 1 MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS
Sbjct: 1 MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
Query: 61 RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ
Sbjct: 61 RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
Query: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL
Sbjct: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
Query: 181 K---RPGGIAGGV-----AALLPRAAVHGESPLAGVAALG----LANTLFVQEPHLVV-- 226
K R G A ++ R + E PL A G V+ H +
Sbjct: 181 KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA 240
Query: 227 --KRGTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 284
TVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC
Sbjct: 241 EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 300
Query: 285 DMTRPCTFT 293
DMTRPCTFT
Sbjct: 301 DMTRPCTFT 309
>gi|239744401 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 489 bits (1258), Expect = e-138
Identities = 256/309 (82%), Positives = 261/309 (84%), Gaps = 16/309 (5%)
Query: 1 MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS
Sbjct: 1 MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
Query: 61 RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ
Sbjct: 61 RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
Query: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL
Sbjct: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
Query: 181 K---RPGGIAGGV-----AALLPRAAVHGESPLAGVAALG----LANTLFVQEPHLVV-- 226
K R G A ++ R + E PL A G V+ H +
Sbjct: 181 KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA 240
Query: 227 --KRGTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 284
TVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC
Sbjct: 241 EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 300
Query: 285 DMTRPCTFT 293
DMTRPCTFT
Sbjct: 301 DMTRPCTFT 309
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 35.8 bits (81), Expect = 0.046
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 130 GCSLGTAGVGLLQP---TLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKRPGGI 186
G LG G G L P L +PG L+ G L G ++ + PGG+
Sbjct: 45 GAGLGALGGGALGPGGKPLKPVPGGLAGAG---LGAGLGAFPAVTFPGALV-----PGGV 96
Query: 187 AGGVAALLPRAAVHGESPLAGVAALGLANTLFVQEPHLVVKRGTVP 232
A AA A G + GV LG++ V +P VK G VP
Sbjct: 97 ADAAAAYKAAKAGAGLGGVPGVGGLGVSAGAVVPQPGAGVKPGKVP 142
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 35.8 bits (81), Expect = 0.046
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 130 GCSLGTAGVGLLQP---TLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKRPGGI 186
G LG G G L P L +PG L+ G L G ++ + PGG+
Sbjct: 45 GAGLGALGGGALGPGGKPLKPVPGGLAGAG---LGAGLGAFPAVTFPGALV-----PGGV 96
Query: 187 AGGVAALLPRAAVHGESPLAGVAALGLANTLFVQEPHLVVKRGTVP 232
A AA A G + GV LG++ V +P VK G VP
Sbjct: 97 ADAAAAYKAAKAGAGLGGVPGVGGLGVSAGAVVPQPGAGVKPGKVP 142
>gi|60460897 butyrophilin-like 9 [Homo sapiens]
Length = 535
Score = 35.0 bits (79), Expect = 0.078
Identities = 47/166 (28%), Positives = 62/166 (37%), Gaps = 18/166 (10%)
Query: 78 KTPQVELQKVAVHLHLLQPEAP----KGAQPHTLQQRLQAD--LDDAGQHRHLQAGTQGC 131
K + +K+ L LQ E +G Q+ D LD A H L+ G
Sbjct: 289 KQAEKRQEKLTAELEKLQTELDWRRAEGQAEWRAAQKYAVDVTLDPASAHPSLEVSEDGK 348
Query: 132 SLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL--KRPGGIAGG 189
S+ + G P P PG +T S ++ R +W + +R G
Sbjct: 349 SVSSRGA----PPGPA-PGHPQRFSEQTCALSLERFSAGRH---YWEVHVGRRSRWFLGA 400
Query: 190 VAALLPRAAVHGESPLAGVAALGLAN--TLFVQEPHLVVKRGTVPP 233
A +PRA SP AG LGL N FV PH V VPP
Sbjct: 401 CLAAVPRAGPARLSPAAGYWVLGLWNGCEYFVLAPHRVALTLRVPP 446
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 32.3 bits (72), Expect = 0.51
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 183 PGGIAGGVAALLPRAAVHGESPLAGVAALGLANTLFVQEPHLVVKRGTVP 232
PGG+A AA A G + GV LG++ V +P VK G VP
Sbjct: 83 PGGVADAAAAYKAAKAGAGLGGVPGVGGLGVSAGAVVPQPGAGVKPGKVP 132
>gi|239756295 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 32.3 bits (72), Expect = 0.51
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 129 QGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKRPGGIAG 188
QGC GL +PT PG L H + L+ G +T ++S+ I + PG A
Sbjct: 7 QGCLFHVPFTGLPEPTAPGKGLDLMHGCCKYLVLKVGFSTQLKSDTLDVIDFQWPGVRAA 66
Query: 189 GVA 191
G A
Sbjct: 67 GGA 69
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 32.3 bits (72), Expect = 0.51
Identities = 37/150 (24%), Positives = 56/150 (37%), Gaps = 9/150 (6%)
Query: 132 SLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKRPGGIAGGVA 191
S+ + GVG T PGS S + GL SE S + PG V
Sbjct: 2345 SMTSLGVGEESTTSRSQPGSTHSTVSPASTTTPGL-----SEESTTVYSSSPGSTETTVF 2399
Query: 192 ALLPRAAVHGESPLAGVAALGLANTLFVQEPHL---VVKRGTVPPACVRATPASLGSTCT 248
P +V GE P + +T E + + T P +T L +T T
Sbjct: 2400 PRTPTTSVRGEEPTTFHSRPASTHTTLFTEDSTTSGLTEESTAFPGSPASTQTGLPATLT 2459
Query: 249 SMAVVSSTTRFMTARTFRGSRVLSQSRVST 278
+ + +T F ++ G+ LS +R +T
Sbjct: 2460 TADLGEESTTFPSSSGSTGT-TLSPARSTT 2488
>gi|169169054 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 30.8 bits (68), Expect = 1.5
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 43 DLNHTGLHGHRVWAAQ---GSRGHHFV----QQQVHEFFVGHKTPQVELQKVAVHLHLLQ 95
DL+ L G AAQ +RG F+ Q QV + H+ PQ+ + +H+H
Sbjct: 237 DLHQAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGH 296
Query: 96 PEAPKGAQPHTLQQRLQADLDDAGQ 120
P+ +G P +A LD A +
Sbjct: 297 PQGQRG--PRRRHSGRRAHLDGAAR 319
>gi|169168706 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 30.8 bits (68), Expect = 1.5
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 43 DLNHTGLHGHRVWAAQ---GSRGHHFV----QQQVHEFFVGHKTPQVELQKVAVHLHLLQ 95
DL+ L G AAQ +RG F+ Q QV + H+ PQ+ + +H+H
Sbjct: 237 DLHQAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGH 296
Query: 96 PEAPKGAQPHTLQQRLQADLDDAGQ 120
P+ +G P +A LD A +
Sbjct: 297 PQGQRG--PRRRHSGRRAHLDGAAR 319
>gi|169169649 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 30.8 bits (68), Expect = 1.5
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 43 DLNHTGLHGHRVWAAQ---GSRGHHFV----QQQVHEFFVGHKTPQVELQKVAVHLHLLQ 95
DL+ L G AAQ +RG F+ Q QV + H+ PQ+ + +H+H
Sbjct: 237 DLHQAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGH 296
Query: 96 PEAPKGAQPHTLQQRLQADLDDAGQ 120
P+ +G P +A LD A +
Sbjct: 297 PQGQRG--PRRRHSGRRAHLDGAAR 319
>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
sapiens]
Length = 516
Score = 30.8 bits (68), Expect = 1.5
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 183 PGGI--AGGVAALLPRAAVHGESPLAGVAALGLANTLFVQEPHLVVKR--GTVPPACVRA 238
PGG+ A VAA A + + +AG A LG T + P L + + GT+P A + A
Sbjct: 272 PGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAA 331
>gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo
sapiens]
Length = 542
Score = 30.8 bits (68), Expect = 1.5
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 183 PGGI--AGGVAALLPRAAVHGESPLAGVAALGLANTLFVQEPHLVVKR--GTVPPACVRA 238
PGG+ A VAA A + + +AG A LG T + P L + + GT+P A + A
Sbjct: 298 PGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAA 357
>gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo
sapiens]
Length = 559
Score = 30.8 bits (68), Expect = 1.5
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 183 PGGI--AGGVAALLPRAAVHGESPLAGVAALGLANTLFVQEPHLVVKR--GTVPPACVRA 238
PGG+ A VAA A + + +AG A LG T + P L + + GT+P A + A
Sbjct: 315 PGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAA 374
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 30.4 bits (67), Expect = 1.9
Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
Query: 130 GCSLGTAGVGLLQP---TLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKRPGGI 186
G LG G G L P L +PG L+ G L G ++ + PGG+
Sbjct: 45 GAGLGALGGGALGPGGKPLKPVPGGLAGAG---LGAGLGAFPAVTFPGALV-----PGGV 96
Query: 187 AGGVAALLPRAAVHGESPLAGVAALGLANT-----LFVQEPHLVVKRGTVP 232
A AA A G + GV LG++ V +P VK G VP
Sbjct: 97 ADAAAAYKAAKAGAGLGGVPGVGGLGVSAAPSVPGAVVPQPGAGVKPGKVP 147
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 30.4 bits (67), Expect = 1.9
Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
Query: 130 GCSLGTAGVGLLQP---TLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKRPGGI 186
G LG G G L P L +PG L+ G L G ++ + PGG+
Sbjct: 45 GAGLGALGGGALGPGGKPLKPVPGGLAGAG---LGAGLGAFPAVTFPGALV-----PGGV 96
Query: 187 AGGVAALLPRAAVHGESPLAGVAALGLANT-----LFVQEPHLVVKRGTVP 232
A AA A G + GV LG++ V +P VK G VP
Sbjct: 97 ADAAAAYKAAKAGAGLGGVPGVGGLGVSAAPSVPGAVVPQPGAGVKPGKVP 147
>gi|226442791 runt-related transcription factor 2 isoform b [Homo
sapiens]
Length = 499
Score = 30.0 bits (66), Expect = 2.5
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 131 CSLGTAGVGLLQPTLP----GIPGSLSHVGSRTLLNSTGLNTSIRSENSFW 177
C+ + G LL P LP G+ SH S T+LNS+G R + S W
Sbjct: 451 CTTTSNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNSSG-----RMDESVW 496
>gi|226442783 runt-related transcription factor 2 isoform a [Homo
sapiens]
Length = 521
Score = 30.0 bits (66), Expect = 2.5
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 131 CSLGTAGVGLLQPTLP----GIPGSLSHVGSRTLLNSTGLNTSIRSENSFW 177
C+ + G LL P LP G+ SH S T+LNS+G R + S W
Sbjct: 473 CTTTSNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNSSG-----RMDESVW 518
>gi|66934969 runt-related transcription factor 2 isoform c [Homo
sapiens]
Length = 507
Score = 30.0 bits (66), Expect = 2.5
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 131 CSLGTAGVGLLQPTLP----GIPGSLSHVGSRTLLNSTGLNTSIRSENSFW 177
C+ + G LL P LP G+ SH S T+LNS+G R + S W
Sbjct: 459 CTTTSNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNSSG-----RMDESVW 504
>gi|16933557 dachsous 1 precursor [Homo sapiens]
Length = 3298
Score = 29.6 bits (65), Expect = 3.3
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 97 EAPKGAQPHTLQQRLQADLDDAGQHRHLQAGTQGCSLGTAGVGLLQPT 144
E P+ TL +LQA DAG + H+ T GTAG LL+P+
Sbjct: 1863 EVPEDVPAGTLLLQLQAHDPDAGANGHV---TYYLGAGTAGAFLLEPS 1907
>gi|169184025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 29.3 bits (64), Expect = 4.3
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 4 RPVLTPA-CGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHG 51
RP+ P C P P C G G W + RL + NH G HG
Sbjct: 70 RPLAHPLPCESVSPCAWPACFGPSGLPQRWPKGRLPSAEQVTNHFGGHG 118
>gi|169179740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 29.3 bits (64), Expect = 4.3
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 4 RPVLTPA-CGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHG 51
RP+ P C P P C G G W + RL + NH G HG
Sbjct: 70 RPLAHPLPCESVSPCAWPACFGPSGLPQRWPKGRLPSAEQVTNHFGGHG 118
>gi|169180137 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 29.3 bits (64), Expect = 4.3
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 4 RPVLTPA-CGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHG 51
RP+ P C P P C G G W + RL + NH G HG
Sbjct: 70 RPLAHPLPCESVSPCAWPACFGPSGLPQRWPKGRLPSAEQVTNHFGGHG 118
>gi|89276766 trophinin isoform 5 [Homo sapiens]
Length = 1431
Score = 29.3 bits (64), Expect = 4.3
Identities = 40/140 (28%), Positives = 56/140 (40%), Gaps = 19/140 (13%)
Query: 162 NSTGLNTSIRSENSFWILLKRPGGIAGGVAALLPRAAVHGESPLAGVAALGLANTLFVQE 221
+ST + S + SF + +GGV++ + + +G A+ G TL
Sbjct: 799 HSTSTSFSSEASISFGGMPCTSASFSGGVSSSFS-GPLSTSATFSGGASSGFGGTLST-- 855
Query: 222 PHLVVKRGTVPPACVRATPASLGSTCTSMAVVSS----TTRF----MTARTFRGSRVLSQ 273
T + V +T S GS T+ V SS +T F T+ F GS S
Sbjct: 856 --------TAGFSGVLSTSTSFGSAPTTSTVFSSALSTSTGFGGILSTSVCFGGSPSSSG 907
Query: 274 SRVSTLLRSICDMTRPCTFT 293
S TL SIC PCT T
Sbjct: 908 SFGGTLSTSICFGGSPCTST 927
>gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C)
precursor [Homo sapiens]
Length = 539
Score = 28.9 bits (63), Expect = 5.6
Identities = 30/73 (41%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 183 PGG-IAGGVAALLPRAAVHG------ESP-LAGVAA---LGLANTL--FVQEPHLVVKRG 229
PGG +AG L AAV G +SP L GV A G A L +Q PH V+ +
Sbjct: 78 PGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLGQS 137
Query: 230 TVPPACVRATPAS 242
+PPA AT AS
Sbjct: 138 IMPPAIPEATEAS 150
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 28.9 bits (63), Expect = 5.6
Identities = 49/193 (25%), Positives = 68/193 (35%), Gaps = 19/193 (9%)
Query: 90 HLHLLQP--EAPKGAQPHTLQQRLQADLDDAGQHRHLQAGTQGCSLGTAGVGLLQPTLPG 147
H L+P E G Q+ +Q+ + G+ H +G S ++ QP
Sbjct: 389 HSACLRPGSETDAGRAVSQAQESVQSKVKGPGKMSHSSSGPASVSQLSSWKTPEQPDPVW 448
Query: 148 IPGSLSHVGSRTLLNSTGLNTS---IRSENSF-----WILLKRPGGIAGGV-----AALL 194
+ S+S G + T L +S I S NSF LKRP A + AA
Sbjct: 449 VQSSVSGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLKRPFSAAAAIAAAAAAAAA 508
Query: 195 PRAAVHGESPLAGVAALGLANTLFVQEPHLVVKRGTVP-PA---CVRATPASLGSTCTSM 250
AA +P +AA P L P PA V A PA+ S S
Sbjct: 509 AAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSH 568
Query: 251 AVVSSTTRFMTAR 263
+ S +R
Sbjct: 569 SQKPSVPLIQASR 581
>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
Length = 739
Score = 28.9 bits (63), Expect = 5.6
Identities = 46/193 (23%), Positives = 72/193 (37%), Gaps = 28/193 (14%)
Query: 104 PHTLQQRLQADLDDAGQHRHLQAGTQGCSLGTAGVGLLQPTLPG---------IPGSLSH 154
P T + RL+ +A + + Q G +LG +G L +PG PG +
Sbjct: 388 PQTGEVRLEEAQSEAPETKGAQVAAPGPALGEEVLGPLAQVVPGPPTAATFPLPPGPVPA 447
Query: 155 VGSRTLLNST---GLNTSIRSENSFWILLKRPGGIAGGVAALLPRA-------AVHGESP 204
V + ++ + G T + + LL P + LP+A A SP
Sbjct: 448 VAAPQVVPLSPPPGYPTGLSPTSP---LLNLPQVVPTSQVVTLPQAVGPLQLLAAGPGSP 504
Query: 205 LAGVAALGLANTLFVQE----PHLVVKRGTVPPACVRATPASLGSTCTSMAVVSSTTRFM 260
+ AA G AN + L + T P + A P S T +AV + +
Sbjct: 505 VKVAAAAGPANVHLINSGVGVTALQLPSATAPGNFLLANPVSGSPIVTGVAVQQG--KII 562
Query: 261 TARTFRGSRVLSQ 273
TF S ++SQ
Sbjct: 563 LTATFPTSMLVSQ 575
Score = 28.1 bits (61), Expect = 9.6
Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 107 LQQRLQADLDDAGQHRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGL 166
L Q LQA +A A G G A G P PG+PGS S TGL
Sbjct: 35 LLQTLQAAEGEA-------AAAAGAGAGAAAAGAEGPGSPGVPGSPPEAASEP---PTGL 84
Query: 167 NTS---IRSENSFWILLKRPGGIAGGVAALLPRAAVHGESPLAGVAAL 211
S + + G ++ + AL P + G P+ AL
Sbjct: 85 RFSPEQVACVCEALLQAGHAGRLSRFLGALPPAERLRGSDPVLRARAL 132
>gi|169194607 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 28.5 bits (62), Expect = 7.3
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 116 DDAGQHRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSR-TLLNSTGLNTSIRSEN 174
+ AG+ A +GC GV L P L S H R T + T ++ +R +
Sbjct: 284 EGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQG 343
Query: 175 SFWILLKRPGGIAGGVAALLPRA 197
+ +LL+ + G AA PRA
Sbjct: 344 APSLLLQ---PVKPGTAAPSPRA 363
>gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 28.5 bits (62), Expect = 7.3
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 116 DDAGQHRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSR-TLLNSTGLNTSIRSEN 174
+ AG+ A +GC GV L P L S H R T + T ++ +R +
Sbjct: 284 EGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQG 343
Query: 175 SFWILLKRPGGIAGGVAALLPRA 197
+ +LL+ + G AA PRA
Sbjct: 344 APSLLLQ---PVKPGTAAPSPRA 363
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,851,528
Number of Sequences: 37866
Number of extensions: 622002
Number of successful extensions: 2159
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2140
Number of HSP's gapped (non-prelim): 54
length of query: 293
length of database: 18,247,518
effective HSP length: 101
effective length of query: 192
effective length of database: 14,423,052
effective search space: 2769225984
effective search space used: 2769225984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.