Search of human proteins with 169171895

Search of human proteins with 169171895

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169171895 PREDICTED: similar to EF-hand calcium binding
domain 3 [Homo sapiens]
         (146 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169171895 PREDICTED: similar to EF-hand calcium binding domai...   302   8e-83
gi|222418696 EF-hand calcium binding domain 3 isoform a [Homo sa...   284   2e-77
gi|27735113 EF-hand calcium binding domain 3 isoform b [Homo sap...   284   2e-77
gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]    30   0.73 
gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens]    30   0.73 
gi|205360989 hypothetical protein LOC205327 [Homo sapiens]             30   0.95 
gi|5032033 RNA binding motif protein 6 [Homo sapiens]                  30   0.95 
gi|22035682 DBF4 homolog B isoform 1 [Homo sapiens]                    29   1.2  
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ...    28   2.8  
gi|18034767 phosphorylated CTD interacting factor 1 [Homo sapiens]     28   2.8  
gi|156546890 WW and C2 domain containing 2 [Homo sapiens]              28   2.8  
gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s...    28   3.6  
gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s...    28   3.6  
gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s...    28   3.6  
gi|51243049 lymphocyte antigen 6 complex G6D [Homo sapiens]            28   3.6  
gi|58743365 ring finger protein 157 [Homo sapiens]                     28   3.6  
gi|169218146 PREDICTED: similar to neuron navigator 3, partial [...    27   6.2  
gi|120953251 neuron navigator 3 [Homo sapiens]                         27   6.2  
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]             27   6.2  
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]             27   6.2  
gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens]      27   8.0  
gi|27734775 hypothetical protein LOC286499 [Homo sapiens]              27   8.0  

>gi|169171895 PREDICTED: similar to EF-hand calcium binding domain 3
           [Homo sapiens]
          Length = 146

 Score =  302 bits (773), Expect = 8e-83
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MKSMDPASGYSNNILTIDQMLKKKQTCIVADATTIKQHVKRATDTYNLGIALEHRKEMLN 60
           MKSMDPASGYSNNILTIDQMLKKKQTCIVADATTIKQHVKRATDTYNLGIALEHRKEMLN
Sbjct: 1   MKSMDPASGYSNNILTIDQMLKKKQTCIVADATTIKQHVKRATDTYNLGIALEHRKEMLN 60

Query: 61  LWQKIRGDLIGIDSRNEAFYDTFSTYTWSWNVCQELLSPKDLRLYDAYVNRNSSHNCRSS 120
           LWQKIRGDLIGIDSRNEAFYDTFSTYTWSWNVCQELLSPKDLRLYDAYVNRNSSHNCRSS
Sbjct: 61  LWQKIRGDLIGIDSRNEAFYDTFSTYTWSWNVCQELLSPKDLRLYDAYVNRNSSHNCRSS 120

Query: 121 SSSDTSECDTDSGRKRKQKGLKGFQQ 146
           SSSDTSECDTDSGRKRKQKGLKGFQQ
Sbjct: 121 SSSDTSECDTDSGRKRKQKGLKGFQQ 146


>gi|222418696 EF-hand calcium binding domain 3 isoform a [Homo
           sapiens]
          Length = 490

 Score =  284 bits (726), Expect = 2e-77
 Identities = 137/146 (93%), Positives = 141/146 (96%)

Query: 1   MKSMDPASGYSNNILTIDQMLKKKQTCIVADATTIKQHVKRATDTYNLGIALEHRKEMLN 60
           +KSMDPASGYSNNI TIDQMLKKKQTC VADAT IKQHVKRATDTYNLGIALEHRKEMLN
Sbjct: 345 IKSMDPASGYSNNIFTIDQMLKKKQTCTVADATAIKQHVKRATDTYNLGIALEHRKEMLN 404

Query: 61  LWQKIRGDLIGIDSRNEAFYDTFSTYTWSWNVCQELLSPKDLRLYDAYVNRNSSHNCRSS 120
           LWQKIRGDLIG+DSRNE+FYDTFSTYTWSWNVCQELLSPKDLRLYDAYVNRNSSHN RSS
Sbjct: 405 LWQKIRGDLIGMDSRNESFYDTFSTYTWSWNVCQELLSPKDLRLYDAYVNRNSSHNSRSS 464

Query: 121 SSSDTSECDTDSGRKRKQKGLKGFQQ 146
           SSSDTSEC TDSGRKRK+KGLKGFQQ
Sbjct: 465 SSSDTSECYTDSGRKRKRKGLKGFQQ 490


>gi|27735113 EF-hand calcium binding domain 3 isoform b [Homo
           sapiens]
          Length = 438

 Score =  284 bits (726), Expect = 2e-77
 Identities = 137/146 (93%), Positives = 141/146 (96%)

Query: 1   MKSMDPASGYSNNILTIDQMLKKKQTCIVADATTIKQHVKRATDTYNLGIALEHRKEMLN 60
           +KSMDPASGYSNNI TIDQMLKKKQTC VADAT IKQHVKRATDTYNLGIALEHRKEMLN
Sbjct: 293 IKSMDPASGYSNNIFTIDQMLKKKQTCTVADATAIKQHVKRATDTYNLGIALEHRKEMLN 352

Query: 61  LWQKIRGDLIGIDSRNEAFYDTFSTYTWSWNVCQELLSPKDLRLYDAYVNRNSSHNCRSS 120
           LWQKIRGDLIG+DSRNE+FYDTFSTYTWSWNVCQELLSPKDLRLYDAYVNRNSSHN RSS
Sbjct: 353 LWQKIRGDLIGMDSRNESFYDTFSTYTWSWNVCQELLSPKDLRLYDAYVNRNSSHNSRSS 412

Query: 121 SSSDTSECDTDSGRKRKQKGLKGFQQ 146
           SSSDTSEC TDSGRKRK+KGLKGFQQ
Sbjct: 413 SSSDTSECYTDSGRKRKRKGLKGFQQ 438


>gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]
          Length = 237

 Score = 30.0 bits (66), Expect = 0.73
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 100 KDLRLYDAYVNRNSSHNCRSSSSSDTSECDTDSGRKRKQK 139
           K+ +    Y + +SS +  SSSSSD+ + D   G++RK+K
Sbjct: 86  KEKKKSGRYSSSSSSSSDSSSSSSDSEDEDKKQGKRRKKK 125


>gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens]
          Length = 247

 Score = 30.0 bits (66), Expect = 0.73
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 100 KDLRLYDAYVNRNSSHNCRSSSSSDTSECDTDSGRKRKQK 139
           K+ +    Y + +SS +  SSSSSD+ + D   G++RK+K
Sbjct: 96  KEKKKSGRYSSSSSSSSDSSSSSSDSEDEDKKQGKRRKKK 135


>gi|205360989 hypothetical protein LOC205327 [Homo sapiens]
          Length = 385

 Score = 29.6 bits (65), Expect = 0.95
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 65  IRGDLIGIDSRNE---AFYDTFSTYTWSWNVCQELLSPKDLRLYDAYVNRNS-SHNCRSS 120
           ++ ++ G    N    AF   +     ++N+ Q  LS K L ++    N++S + NCRSS
Sbjct: 167 VKSNMFGAPEHNTDFGAFKHLYMLLVNAFNLSQNSLSKKSLNVW----NKDSIASNCRSS 222

Query: 121 SSSDTSECDTDSGR 134
            S  T+ C  +  R
Sbjct: 223 PSHTTNGCQGEKVR 236


>gi|5032033 RNA binding motif protein 6 [Homo sapiens]
          Length = 1123

 Score = 29.6 bits (65), Expect = 0.95
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 63  QKIRGDLIGIDSRNEAFYDTFSTYTWSWNVCQELLSPKDLRLYDAYVNRNSSHNCRSSSS 122
           Q+   D    DS    +YD  +   +  N  QE+  P+D  L +    +      +  SS
Sbjct: 783 QQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQEVYVPQDPGLPEEEEIKEKKPTSQGKSS 842

Query: 123 SDTSECDTDSGRKRKQKGLKGFQQ 146
           S   E     G+++K +G+  FQ+
Sbjct: 843 S-KKEMSKRDGKEKKDRGVTRFQE 865


>gi|22035682 DBF4 homolog B isoform 1 [Homo sapiens]
          Length = 615

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 7   ASGYSNNILTIDQMLKKKQTCIVADATTIKQHVKRATDTYNLGIALEHRKEMLNLWQKIR 66
           A  +   IL +D+M+   Q   +A     KQ  K+   T     A E R   +    +++
Sbjct: 174 ARSWGVRILHVDEMMMHVQQLSLASLCVKKQQPKKPEGTCP---AAESRTRKV---ARLK 227

Query: 67  GDLIGIDSRNEAFYDTFSTYTWSWNVCQELLSPKDLRLYDAYVNRNSSHNCRSSSSSDTS 126
              + I+  +  F      +     +    L PKD   ++A     S H+ R S   + S
Sbjct: 228 APFLKIEDESRKFRPFHHQFKSFPEI--SFLGPKDASPFEAPTTLGSMHHTRESKDGEPS 285

Query: 127 ECDTDSGRKRKQKG 140
                    R++KG
Sbjct: 286 PRSAAHTMPRRKKG 299


>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
           sapiens]
          Length = 1362

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 112 NSSHNCRSSSSSDTSECDTDSGRKRKQKGLKGFQQ 146
           + S +   SSSSD+ + +T+   K K+KG  G +Q
Sbjct: 701 SESESSSESSSSDSEDSETEMAPKSKKKGHPGREQ 735


>gi|18034767 phosphorylated CTD interacting factor 1 [Homo sapiens]
          Length = 704

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 107 AYVNRNSSHNCRSSSSSDTSECDTDSGRKR 136
           AY     SH+  SSSSS +   D DSGR++
Sbjct: 666 AYRQSGRSHSSGSSSSSSSEAKDRDSGREQ 695


>gi|156546890 WW and C2 domain containing 2 [Homo sapiens]
          Length = 1192

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 102 LRLYDAYVNRNSSHNCRSSSSSDTSECDTD 131
           +RL DAY  ++SSH    S SS +++ D D
Sbjct: 133 VRLNDAYKEKSSSHTSLFSGSSSSTKYDPD 162


>gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
            sapiens]
          Length = 4470

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 28   IVADATTIKQHVKR-ATDTYNLGIALEHRKEMLNLWQKIRGDLIGIDSRNEAFYDTFSTY 86
            +V D   + + + R A D  N  + LE   +++ + +++   +I      E + D+F  Y
Sbjct: 940  LVNDIYNVARLIPRLAKDRMNYKMDLEDNTDLIEMREEVSSLVINAMKEAEEYQDSFERY 999

Query: 87   TWSW 90
            ++ W
Sbjct: 1000 SYLW 1003


>gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
           sapiens]
          Length = 4485

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 28  IVADATTIKQHVKR-ATDTYNLGIALEHRKEMLNLWQKIRGDLIGIDSRNEAFYDTFSTY 86
           +V D   + + + R A D  N  + LE   +++ + +++   +I      E + D+F  Y
Sbjct: 931 LVNDIYNVARLIPRLAKDRMNYKMDLEDNTDLIEMREEVSSLVINAMKEAEEYQDSFERY 990

Query: 87  TWSW 90
           ++ W
Sbjct: 991 SYLW 994


>gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
           sapiens]
          Length = 4485

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 28  IVADATTIKQHVKR-ATDTYNLGIALEHRKEMLNLWQKIRGDLIGIDSRNEAFYDTFSTY 86
           +V D   + + + R A D  N  + LE   +++ + +++   +I      E + D+F  Y
Sbjct: 931 LVNDIYNVARLIPRLAKDRMNYKMDLEDNTDLIEMREEVSSLVINAMKEAEEYQDSFERY 990

Query: 87  TWSW 90
           ++ W
Sbjct: 991 SYLW 994


>gi|51243049 lymphocyte antigen 6 complex G6D [Homo sapiens]
          Length = 133

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 110 NRNSSHNCRSSSSSDTSECDTDSGRKRKQKGLK 142
           NR   +NC  S SS   E  T  G  R Q GL+
Sbjct: 20  NRMRCYNCGGSPSSSCKEAVTTCGEGRPQPGLE 52


>gi|58743365 ring finger protein 157 [Homo sapiens]
          Length = 679

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 70  IGIDSRNEAFYDTFSTYTWSWNVCQELLSPKDLRLYDAYVNRNSSHNCRSSSSSDTSE 127
           +G++  N   +D  S       +C E+  P   +  D  V+RN+     SSSS + SE
Sbjct: 611 LGMECDNNNDFDIASVKALDNKLCSEVCLPGAWQADDNAVSRNAQRRRLSSSSLEDSE 668


>gi|169218146 PREDICTED: similar to neuron navigator 3, partial
           [Homo sapiens]
          Length = 733

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 99  PKDLRLYDAYVNRN-SSHNCRSSSSSDTSECDTDSGRKRKQ 138
           PKDLR+   + + + SS N  +S SS  S  D DS +K+K+
Sbjct: 29  PKDLRIRRQHSSESVSSINSATSHSSIGSGNDADSKKKKKK 69


>gi|120953251 neuron navigator 3 [Homo sapiens]
          Length = 2363

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 99   PKDLRLYDAYVNRN-SSHNCRSSSSSDTSECDTDSGRKRKQ 138
            PKDLR+   + + + SS N  +S SS  S  D DS +K+K+
Sbjct: 1659 PKDLRIRRQHSSESVSSINSATSHSSIGSGNDADSKKKKKK 1699


>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
          Length = 338

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 89  SWNVCQELLSPKDLRLYDAYVNRNSSHNCRSSSSSDTSECDTDSGRKRKQK 139
           S +  QE    K  R   +  + +SS +  SSSSS +S   +  GRK++ K
Sbjct: 160 SASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK 210


>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
          Length = 341

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 89  SWNVCQELLSPKDLRLYDAYVNRNSSHNCRSSSSSDTSECDTDSGRKRKQK 139
           S +  QE    K  R   +  + +SS +  SSSSS +S   +  GRK++ K
Sbjct: 160 SASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK 210


>gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens]
          Length = 241

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 111 RNSSHNCRSSSSSDTSECDTDSGRKRK 137
           +   H  R SS SD+S+ ++D+G++ +
Sbjct: 191 KKKKHRDRKSSDSDSSDSESDTGKRAR 217


>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
          Length = 248

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 12/34 (35%), Positives = 23/34 (67%)

Query: 112 NSSHNCRSSSSSDTSECDTDSGRKRKQKGLKGFQ 145
           +SS +  SSSSSD+ + +   G++RK+K  + ++
Sbjct: 107 SSSSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYK 140


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.128    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,444,736
Number of Sequences: 37866
Number of extensions: 206808
Number of successful extensions: 751
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 33
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.