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Search of human proteins with 169164936
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169164936 PREDICTED: family with sequence similarity 132,
member B [Homo sapiens]
(367 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169164936 PREDICTED: family with sequence similarity 132, mem... 744 0.0
gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo sap... 744 0.0
gi|121949746 family with sequence similarity 132, member A [Homo... 172 4e-43
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 50 2e-06
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 50 2e-06
gi|50511941 EMI domain containing 1 [Homo sapiens] 50 2e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 49 5e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 49 5e-06
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 49 5e-06
gi|5901944 elastin microfibril interfacer 1 [Homo sapiens] 49 5e-06
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 48 2e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 48 2e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 48 2e-05
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 45 8e-05
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 45 1e-04
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 45 1e-04
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 45 1e-04
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 45 1e-04
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 45 1e-04
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 45 1e-04
gi|118498339 EMI domain containing 2 [Homo sapiens] 44 2e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 44 2e-04
gi|5729785 complement component 1, q subcomponent-like 1 [Homo s... 44 2e-04
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 44 2e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 44 3e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 44 3e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 44 3e-04
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 44 3e-04
gi|56606142 complement component 1, q subcomponent-like 4 [Homo ... 43 4e-04
gi|18641360 collectin sub-family member 12 [Homo sapiens] 43 4e-04
>gi|169164936 PREDICTED: family with sequence similarity 132, member
B [Homo sapiens]
Length = 367
Score = 744 bits (1920), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA 60
MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA
Sbjct: 1 MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA 60
Query: 61 GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK 120
GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK
Sbjct: 61 GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK 120
Query: 121 FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180
FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL
Sbjct: 121 FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180
Query: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY 240
APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY
Sbjct: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY 240
Query: 241 YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC 300
YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC
Sbjct: 241 YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC 300
Query: 301 IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF 360
IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF
Sbjct: 301 IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF 360
Query: 361 SAVLLGV 367
SAVLLGV
Sbjct: 361 SAVLLGV 367
>gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo
sapiens]
Length = 367
Score = 744 bits (1920), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA 60
MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA
Sbjct: 1 MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA 60
Query: 61 GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK 120
GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK
Sbjct: 61 GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK 120
Query: 121 FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180
FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL
Sbjct: 121 FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180
Query: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY 240
APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY
Sbjct: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY 240
Query: 241 YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC 300
YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC
Sbjct: 241 YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC 300
Query: 301 IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF 360
IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF
Sbjct: 301 IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF 360
Query: 361 SAVLLGV 367
SAVLLGV
Sbjct: 361 SAVLLGV 367
>gi|121949746 family with sequence similarity 132, member A [Homo
sapiens]
Length = 302
Score = 172 bits (436), Expect = 4e-43
Identities = 122/318 (38%), Positives = 162/318 (50%), Gaps = 53/318 (16%)
Query: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPT-AERAHSVDPRDAWMLFVRQSDKGVNGK 109
P R+ PP A A E GL +P+ A D W+ FVR+ D G +
Sbjct: 35 PGQRADPPNATASASSRE-----GLPEAPKPSQASGPEFSDAHMTWLNFVRRPDDGAL-R 88
Query: 110 KRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCT 169
KR + KK + L GPPGPPG + + E LL EFQ LLK A +R
Sbjct: 89 KRCGSRDKKPR-DLFGPPGPPGAE------VTAETLLHEFQELLKEATERR--------- 132
Query: 170 CGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAP-GPRAPRVEAAFLCRLRRDAL 228
+ L PL P G V AF CRL+
Sbjct: 133 -----------------------------FSGLLDPLLPQGAGLRLVGEAFHCRLQGPRR 163
Query: 229 VERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGP 288
V++R L EL + P A+GAF RG GL+L SG++ APV+G + +A+LHV E +
Sbjct: 164 VDKRTLVELHGFQAPAAQGAFLRGSGLSLASGRFTAPVSGIFQFSASLHVDHSELQGKAR 223
Query: 289 PRPRDHLRLLICIQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNAS 348
R RD + +LICI+S CQR+ LEA+ GLES+S +FT+ V G+L LQ GQ+ SVF+DN S
Sbjct: 224 LRARDVVCVLICIESLCQRHTCLEAVSGLESNSRVFTLQVQGLLQLQAGQYASVFVDNGS 283
Query: 349 GCSLTVRSGSHFSAVLLG 366
G LT+++GS FS +LLG
Sbjct: 284 GAVLTIQAGSSFSGLLLG 301
>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
Length = 389
Score = 50.4 bits (119), Expect = 2e-06
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 35 LGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAV--FQEPTAERAHSVDPR 92
LG P S + P P+ P G A S++ +A+ F P + + R
Sbjct: 93 LGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDGHQMALLNFFFPDEKPYSEEESR 152
Query: 93 DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
+S++G +G +++ K KK G PGP GPPGP GPPGP PP
Sbjct: 153 RVRRNKRSKSNEGADGPVKNKKKGKKA--GPPGPNGPPGPPGPPGPQGPP 200
Score = 40.8 bits (94), Expect = 0.002
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGPPGPPGPQGPPG
Sbjct: 215 GPPGPPGPPGPQGPPG 230
Score = 34.3 bits (77), Expect = 0.18
Identities = 12/14 (85%), Positives = 12/14 (85%)
Query: 125 GPPGPPGPQGPPGP 138
GPPGPPGP GP GP
Sbjct: 215 GPPGPPGPPGPQGP 228
Score = 31.2 bits (69), Expect = 1.5
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 122 GLPGPPGPPGPQGPPGP 138
G PGPPGP GP G GP
Sbjct: 218 GPPGPPGPQGPPGLQGP 234
Score = 30.8 bits (68), Expect = 2.0
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGP GPPG QGP G
Sbjct: 221 GPPGPQGPPGLQGPSG 236
>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
Length = 391
Score = 50.4 bits (119), Expect = 2e-06
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 35 LGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAV--FQEPTAERAHSVDPR 92
LG P S + P P+ P G A S++ +A+ F P + + R
Sbjct: 93 LGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDGHQMALLNFFFPDEKPYSEEESR 152
Query: 93 DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
+S++G +G +++ K KK G PGP GPPGP GPPGP PP
Sbjct: 153 RVRRNKRSKSNEGADGPVKNKKKGKKA--GPPGPNGPPGPPGPPGPQGPP 200
Score = 40.8 bits (94), Expect = 0.002
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGPPGPPGPQGPPG
Sbjct: 215 GPPGPPGPPGPQGPPG 230
Score = 34.3 bits (77), Expect = 0.18
Identities = 12/14 (85%), Positives = 12/14 (85%)
Query: 125 GPPGPPGPQGPPGP 138
GPPGPPGP GP GP
Sbjct: 215 GPPGPPGPPGPQGP 228
Score = 31.2 bits (69), Expect = 1.5
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 122 GLPGPPGPPGPQGPPGP 138
G PGPPGP GP G GP
Sbjct: 218 GPPGPPGPQGPPGLQGP 234
Score = 30.8 bits (68), Expect = 2.0
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGP GPPG QGP G
Sbjct: 221 GPPGPQGPPGLQGPSG 236
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 50.4 bits (119), Expect = 2e-06
Identities = 40/130 (30%), Positives = 51/130 (39%), Gaps = 10/130 (7%)
Query: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110
P P PP A G G PT + + M + G G
Sbjct: 176 PAPLWGPPPAQGSPGDGGLQDQVGAWGLPGPTGPKGDAGSRGPMGM----RGPPGPQGPP 231
Query: 111 RSRGKAKKL----KFGLPGPPGPPGPQGPPGPIIPPEALLKEF-QLLLKGAVRQRERAEP 165
S G+A + + G PGPPGPPGP GPP P+ PP A + + LL + P
Sbjct: 232 GSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPHARISQHGDPLLSNTFTETNNHWP 291
Query: 166 EPCTCGPAGP 175
+ T GP GP
Sbjct: 292 QGPT-GPPGP 300
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/108 (32%), Positives = 38/108 (35%), Gaps = 14/108 (12%)
Query: 36 GSASPMSAKSRPRCGPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94
GS PM + P GP P P RAG P E P P P
Sbjct: 214 GSRGPMGMRGPP--GPQGPPGSPGRAGAVGTPGERGPPG-------PPGPPGPPGPPAPV 264
Query: 95 WMLFVRQSDKG----VNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
R S G N + + G PGPPGP GP GPPGP
Sbjct: 265 GPPHARISQHGDPLLSNTFTETNNHWPQGPTGPPGPPGPMGPPGPPGP 312
Score = 29.6 bits (65), Expect = 4.5
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
KG++G +G+ + L+ G PGP G G +G PGP
Sbjct: 331 KGISGHPGEKGE-RGLR-GEPGPQGSAGQRGEPGP 363
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 49.3 bits (116), Expect = 5e-06
Identities = 50/134 (37%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 47 PRCGP-FPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKG 105
P GP FP + P A GEA P+ A P G Q P E P A +D G
Sbjct: 361 PAGGPGFPGA--PGAKGEAGPTGARGPEGA---QGPRGEPGTPGSPGPAGASGNPGTD-G 414
Query: 106 VNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164
+ G K S G G PGP GPPGPQG GP+ P + KG Q + E
Sbjct: 415 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKG--EQGPKGE 472
Query: 165 PEPCTCGPAGPVAA 178
P GPAGP A
Sbjct: 473 P-----GPAGPQGA 481
Score = 45.4 bits (106), Expect = 8e-05
Identities = 41/118 (34%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER-A 163
G G K +G+ +K + GP GPPGPQGP G P + + KGA R R
Sbjct: 98 GQPGPKGQKGEPGDIK-DIVGPKGPPGPQGPAGEQGPRGDRGDKGE---KGAPGPRGRDG 153
Query: 164 EP-EPCTCGPAGPVAASLAP------VSATAGEDDDDVVGDVLALLAAPLAP-GPRAP 213
EP P GP GP P + AG D+ G L ++ P+ P GPR P
Sbjct: 154 EPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGP 211
Score = 45.1 bits (105), Expect = 1e-04
Identities = 58/203 (28%), Positives = 72/203 (35%), Gaps = 29/203 (14%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
+ DKG G RG+ + G PG PGPPGP GPPG P L F + G ++
Sbjct: 137 RGDKGEKGAPGPRGRDGEP--GTPGNPGPPGPPGPPG----PPGLGGNFAAQMAGGFDEK 190
Query: 161 ERAEPEPCTCGPAGPVAASLAPVSATA----------GEDDDDVVGDVLALLAAPLAPGP 210
GP GP+ P A A GE + V + P PG
Sbjct: 191 AGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGK 250
Query: 211 RAPRVEAAFLCRL-RRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYRAP-VAG 268
EA + R + A G LP +G R PGL+ G+ AP V G
Sbjct: 251 PGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKG-HRGYPGLDGAKGEAGAPGVKG 309
Query: 269 FYALAATLHVALGEPPRRGPPRP 291
G P G P P
Sbjct: 310 ----------ESGSPGENGSPGP 322
Score = 42.4 bits (98), Expect = 7e-04
Identities = 38/110 (34%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 39 SPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLF 98
+P R GP P A GE PAG A + ER + P A
Sbjct: 778 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAG 837
Query: 99 VRQSDKGVNGKKRSRGKA-KKLKFGLPGPPGP---PGPQGPPGPIIPPEA 144
+D G G K +G+A +K G PGP GP PGPQGP G P A
Sbjct: 838 PPGAD-GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGA 886
Score = 42.0 bits (97), Expect = 9e-04
Identities = 37/95 (38%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE---PEPCTCGPAGPVAA 178
G PGP GPPGP GP G P A + + GA R E A+ EP T G GP A
Sbjct: 348 GQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA-RGPEGAQGPRGEPGTPGSPGPAGA 406
Query: 179 SLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
S P T G + AP PGPR P
Sbjct: 407 SGNP--GTDGIPGAKGSAGAPGIAGAPGFPGPRGP 439
Score = 41.6 bits (96), Expect = 0.001
Identities = 52/178 (29%), Positives = 64/178 (35%), Gaps = 43/178 (24%)
Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD--------PRDAWMLFVRQ 101
GP + P A G++ P GL P E+ D P L ++
Sbjct: 921 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 980
Query: 102 SDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQG---------PPGPIIPPEALLKEFQLL 152
G+ G++ RG GLPGP G PG QG PPGP+ PP
Sbjct: 981 GIVGLPGQRGERGFP-----GLPGPSGEPGKQGAPGASGDRGPPGPVGPPG--------- 1026
Query: 153 LKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGP 210
L G + R E P GP G A A V GE + AP APGP
Sbjct: 1027 LTGPAGEPGR-EGSPGADGPPGRDGA--AGVKGDRGE---------TGAVGAPGAPGP 1072
Score = 40.4 bits (93), Expect = 0.003
Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 32/108 (29%)
Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
GP + G P + PAG Q P R DKG G+
Sbjct: 1080 GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRG----------------DKGEAGE 1123
Query: 110 KRSRGKAKKLKF----GLPGPPGPPG------------PQGPPGPIIP 141
RG F GLPGPPGP G P+GPPGP+ P
Sbjct: 1124 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGP 1171
Score = 38.9 bits (89), Expect = 0.007
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEA 144
G G+ G A G PG PGPPGP GPPGP I A
Sbjct: 1188 GPRGRSGETGPA-----GPPGNPGPPGPPGPPGPGIDMSA 1222
Score = 37.7 bits (86), Expect = 0.016
Identities = 27/92 (29%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 47 PRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGV 106
P P + P +G P P EP E + D R GV
Sbjct: 1000 PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG-----RDGAAGV 1054
Query: 107 NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
G + G G PG PGPPG GP GP
Sbjct: 1055 KGDRGETGAV-----GAPGAPGPPGSPGPAGP 1081
Score = 37.4 bits (85), Expect = 0.021
Identities = 37/114 (32%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGE-AEPSEANRPA--GLAVFQEPTAERAHSVDPR 92
G P A+ +P FP P A GE + E P GL E + P
Sbjct: 588 GPPGPQGARGQPGVMGFPG--PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 645
Query: 93 DAWMLFVRQSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPI-IPPEA 144
A G G++ +G F GLPGPPGPPG G PG +P EA
Sbjct: 646 PA----------GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEA 689
Score = 37.4 bits (85), Expect = 0.021
Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 39/156 (25%)
Query: 42 SAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAER--AHSVDPRDAWMLFV 99
SA +R G + PP G A P A+ G Q ++ A + P+
Sbjct: 814 SAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 873
Query: 100 RQSDKGVNGKKRSRGK----------------AKKLKFGLPGPPGPPGPQGPPGPIIPPE 143
Q GV G K +RG G PGPPGPPGP G GP
Sbjct: 874 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGP----- 928
Query: 144 ALLKEFQLLLKGAVRQRERAEP----EPCTCGPAGP 175
KGA + + P EP GPAGP
Sbjct: 929 ----------KGA--RGDSGPPGRAGEPGLQGPAGP 952
Score = 37.0 bits (84), Expect = 0.028
Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
G A P + + P P G P E +P V E A V PR
Sbjct: 645 GPAGPAGERGE-QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL--VGPR--- 698
Query: 96 MLFVRQSDKGVNGKKRSRGKAKKLKF--GLPGPPGPPGPQGPPGPIIPPEA 144
++G G++ S G A+ L+ GLPG PG GP+G GP PP A
Sbjct: 699 ------GERGFPGERGSPG-AQGLQGPRGLPGTPGTDGPKGASGPAGPPGA 742
Score = 36.2 bits (82), Expect = 0.048
Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 35 LGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPR-- 92
+G P + P FP AG + P E P+GLA + + +P
Sbjct: 500 VGPIGPPGERGAPGNRGFP-GQDGLAGPKGAPGERG-PSGLAGPKGANGDPGRPGEPGLP 557
Query: 93 DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
A L R D G GK G + G PGPPGP G +G PG
Sbjct: 558 GARGLTGRPGDAGPQGKVGPSGAPGE--DGRPGPPGPQGARGQPG 600
Score = 35.8 bits (81), Expect = 0.062
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 50 GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
GP PR P G + EA +P G A + P + P + V+ +G G
Sbjct: 237 GPMGPRGPPGPPGKPGDDGEAGKP-GKAGERGPPGPQGARGFPGTPGLPGVK-GHRGYPG 294
Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPC 168
++G+A G+ G G PG G PGP+ P + + GA R + +P
Sbjct: 295 LDGAKGEAGAP--GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGN-DGQPG 351
Query: 169 TCGPAGPVAASLAP 182
GP GPV + P
Sbjct: 352 PAGPPGPVGPAGGP 365
Score = 34.7 bits (78), Expect = 0.14
Identities = 33/107 (30%), Positives = 36/107 (33%), Gaps = 19/107 (17%)
Query: 31 GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90
GG LG PR P P P G + P E P P R
Sbjct: 192 GGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPG----VSGPMGPRGPPGP 247
Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
P + D G GK GKA G GPPGP G +G PG
Sbjct: 248 PG-------KPGDDGEAGKP---GKA-----GERGPPGPQGARGFPG 279
Score = 34.7 bits (78), Expect = 0.14
Identities = 31/94 (32%), Positives = 34/94 (36%), Gaps = 28/94 (29%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181
G G PGP GPQG PGP + A EP GP GP A
Sbjct: 468 GPKGEPGPAGPQGAPGP----------------AGEEGKRGARGEPGGVGPIGPPGERGA 511
Query: 182 PVS-ATAGEDDDDVVGDVLALLAAPL-APGPRAP 213
P + G+D LA P APG R P
Sbjct: 512 PGNRGFPGQDG----------LAGPKGAPGERGP 535
Score = 34.3 bits (77), Expect = 0.18
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110
P P + G + P EA P + P ER + R + Q +G+ G
Sbjct: 671 PGPPGEGGKPGDQGVPGEAGAPGLVG----PRGERGFPGE-RGSPGAQGLQGPRGLPGTP 725
Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPG 137
+ G G GP GPPG QGPPG
Sbjct: 726 GTDGPK-----GASGPAGPPGAQGPPG 747
Score = 32.7 bits (73), Expect = 0.53
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 15/36 (41%)
Query: 122 GLPGPPGPPGPQ---------------GPPGPIIPP 142
G+PGP GPPGP+ GPPGP PP
Sbjct: 1179 GIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPP 1214
Score = 31.6 bits (70), Expect = 1.2
Identities = 39/126 (30%), Positives = 44/126 (34%), Gaps = 34/126 (26%)
Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKA 116
P A G A P A P GL Q ER + G+ G K RG
Sbjct: 730 PKGASGPAGPPGAQGPPGL---QGMPGERGAA----------------GIAGPKGDRGDV 770
Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPV 176
+ G G PG G +G GPI PP A E+ E P GPAG
Sbjct: 771 GEK--GPEGAPGKDGGRGLTGPIGPPGP-----------AGANGEKGEVGP--PGPAGSA 815
Query: 177 AASLAP 182
A AP
Sbjct: 816 GARGAP 821
Score = 30.4 bits (67), Expect = 2.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
G +G K + G A G PG GPPG QG PG
Sbjct: 726 GTDGPKGASGPA-----GPPGAQGPPGLQGMPG 753
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 49.3 bits (116), Expect = 5e-06
Identities = 50/134 (37%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 47 PRCGP-FPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKG 105
P GP FP + P A GEA P+ A P G Q P E P A +D G
Sbjct: 292 PAGGPGFPGA--PGAKGEAGPTGARGPEGA---QGPRGEPGTPGSPGPAGASGNPGTD-G 345
Query: 106 VNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164
+ G K S G G PGP GPPGPQG GP+ P + KG Q + E
Sbjct: 346 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKG--EQGPKGE 403
Query: 165 PEPCTCGPAGPVAA 178
P GPAGP A
Sbjct: 404 P-----GPAGPQGA 412
Score = 45.8 bits (107), Expect = 6e-05
Identities = 70/259 (27%), Positives = 87/259 (33%), Gaps = 42/259 (16%)
Query: 48 RCGPFPRSHPPRAGGEAEPSEANR---PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDK 104
RC P G + EP + P G Q P E+ D + DK
Sbjct: 22 RCQGQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGD----------RGDK 71
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164
G G RG+ + G PG PGPPGP GPPG P L F + G ++
Sbjct: 72 GEKGAPGPRGRDGEP--GTPGNPGPPGPPGPPG----PPGLGGNFAAQMAGGFDEKAGGA 125
Query: 165 PEPCTCGPAGPVAASLAPVSATA----------GEDDDDVVGDVLALLAAPLAPGPRAPR 214
GP GP+ P A A GE + V + P PG
Sbjct: 126 QLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDD 185
Query: 215 VEAAFLCRL-RRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYRAP-VAGFYAL 272
EA + R + A G LP +G R PGL+ G+ AP V G
Sbjct: 186 GEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKG-HRGYPGLDGAKGEAGAPGVKG---- 240
Query: 273 AATLHVALGEPPRRGPPRP 291
G P G P P
Sbjct: 241 ------ESGSPGENGSPGP 253
Score = 42.4 bits (98), Expect = 7e-04
Identities = 38/110 (34%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 39 SPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLF 98
+P R GP P A GE PAG A + ER + P A
Sbjct: 709 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAG 768
Query: 99 VRQSDKGVNGKKRSRGKA-KKLKFGLPGPPGP---PGPQGPPGPIIPPEA 144
+D G G K +G+A +K G PGP GP PGPQGP G P A
Sbjct: 769 PPGAD-GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGA 817
Score = 42.0 bits (97), Expect = 9e-04
Identities = 37/95 (38%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE---PEPCTCGPAGPVAA 178
G PGP GPPGP GP G P A + + GA R E A+ EP T G GP A
Sbjct: 279 GQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA-RGPEGAQGPRGEPGTPGSPGPAGA 337
Query: 179 SLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
S P T G + AP PGPR P
Sbjct: 338 SGNP--GTDGIPGAKGSAGAPGIAGAPGFPGPRGP 370
Score = 41.6 bits (96), Expect = 0.001
Identities = 52/178 (29%), Positives = 64/178 (35%), Gaps = 43/178 (24%)
Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD--------PRDAWMLFVRQ 101
GP + P A G++ P GL P E+ D P L ++
Sbjct: 852 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 911
Query: 102 SDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQG---------PPGPIIPPEALLKEFQLL 152
G+ G++ RG GLPGP G PG QG PPGP+ PP
Sbjct: 912 GIVGLPGQRGERGFP-----GLPGPSGEPGKQGAPGASGDRGPPGPVGPPG--------- 957
Query: 153 LKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGP 210
L G + R E P GP G A A V GE + AP APGP
Sbjct: 958 LTGPAGEPGR-EGSPGADGPPGRDGA--AGVKGDRGE---------TGAVGAPGAPGP 1003
Score = 40.4 bits (93), Expect = 0.003
Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 32/108 (29%)
Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
GP + G P + PAG Q P R DKG G+
Sbjct: 1011 GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRG----------------DKGEAGE 1054
Query: 110 KRSRGKAKKLKF----GLPGPPGPPG------------PQGPPGPIIP 141
RG F GLPGPPGP G P+GPPGP+ P
Sbjct: 1055 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGP 1102
Score = 38.9 bits (89), Expect = 0.007
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEA 144
G G+ G A G PG PGPPGP GPPGP I A
Sbjct: 1119 GPRGRSGETGPA-----GPPGNPGPPGPPGPPGPGIDMSA 1153
Score = 37.7 bits (86), Expect = 0.016
Identities = 27/92 (29%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 47 PRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGV 106
P P + P +G P P EP E + D R GV
Sbjct: 931 PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG-----RDGAAGV 985
Query: 107 NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
G + G G PG PGPPG GP GP
Sbjct: 986 KGDRGETGAV-----GAPGAPGPPGSPGPAGP 1012
Score = 37.4 bits (85), Expect = 0.021
Identities = 37/114 (32%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGE-AEPSEANRPA--GLAVFQEPTAERAHSVDPR 92
G P A+ +P FP P A GE + E P GL E + P
Sbjct: 519 GPPGPQGARGQPGVMGFPG--PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 576
Query: 93 DAWMLFVRQSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPI-IPPEA 144
A G G++ +G F GLPGPPGPPG G PG +P EA
Sbjct: 577 PA----------GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEA 620
Score = 37.4 bits (85), Expect = 0.021
Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 39/156 (25%)
Query: 42 SAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAER--AHSVDPRDAWMLFV 99
SA +R G + PP G A P A+ G Q ++ A + P+
Sbjct: 745 SAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 804
Query: 100 RQSDKGVNGKKRSRGK----------------AKKLKFGLPGPPGPPGPQGPPGPIIPPE 143
Q GV G K +RG G PGPPGPPGP G GP
Sbjct: 805 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGP----- 859
Query: 144 ALLKEFQLLLKGAVRQRERAEP----EPCTCGPAGP 175
KGA + + P EP GPAGP
Sbjct: 860 ----------KGA--RGDSGPPGRAGEPGLQGPAGP 883
Score = 37.0 bits (84), Expect = 0.028
Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
G A P + + P P G P E +P V E A V PR
Sbjct: 576 GPAGPAGERGE-QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL--VGPR--- 629
Query: 96 MLFVRQSDKGVNGKKRSRGKAKKLKF--GLPGPPGPPGPQGPPGPIIPPEA 144
++G G++ S G A+ L+ GLPG PG GP+G GP PP A
Sbjct: 630 ------GERGFPGERGSPG-AQGLQGPRGLPGTPGTDGPKGASGPAGPPGA 673
Score = 36.2 bits (82), Expect = 0.048
Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 35 LGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPR-- 92
+G P + P FP AG + P E P+GLA + + +P
Sbjct: 431 VGPIGPPGERGAPGNRGFP-GQDGLAGPKGAPGERG-PSGLAGPKGANGDPGRPGEPGLP 488
Query: 93 DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
A L R D G GK G + G PGPPGP G +G PG
Sbjct: 489 GARGLTGRPGDAGPQGKVGPSGAPGE--DGRPGPPGPQGARGQPG 531
Score = 35.8 bits (81), Expect = 0.062
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 50 GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
GP PR P G + EA +P G A + P + P + V+ +G G
Sbjct: 168 GPMGPRGPPGPPGKPGDDGEAGKP-GKAGERGPPGPQGARGFPGTPGLPGVK-GHRGYPG 225
Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPC 168
++G+A G+ G G PG G PGP+ P + + GA R + +P
Sbjct: 226 LDGAKGEAGAP--GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGN-DGQPG 282
Query: 169 TCGPAGPVAASLAP 182
GP GPV + P
Sbjct: 283 PAGPPGPVGPAGGP 296
Score = 34.7 bits (78), Expect = 0.14
Identities = 33/107 (30%), Positives = 36/107 (33%), Gaps = 19/107 (17%)
Query: 31 GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90
GG LG PR P P P G + P E P P R
Sbjct: 123 GGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPG----VSGPMGPRGPPGP 178
Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
P + D G GK GKA G GPPGP G +G PG
Sbjct: 179 PG-------KPGDDGEAGKP---GKA-----GERGPPGPQGARGFPG 210
Score = 34.7 bits (78), Expect = 0.14
Identities = 31/94 (32%), Positives = 34/94 (36%), Gaps = 28/94 (29%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181
G G PGP GPQG PGP + A EP GP GP A
Sbjct: 399 GPKGEPGPAGPQGAPGP----------------AGEEGKRGARGEPGGVGPIGPPGERGA 442
Query: 182 PVS-ATAGEDDDDVVGDVLALLAAPL-APGPRAP 213
P + G+D LA P APG R P
Sbjct: 443 PGNRGFPGQDG----------LAGPKGAPGERGP 466
Score = 34.3 bits (77), Expect = 0.18
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110
P P + G + P EA P + P ER + R + Q +G+ G
Sbjct: 602 PGPPGEGGKPGDQGVPGEAGAPGLVG----PRGERGFPGE-RGSPGAQGLQGPRGLPGTP 656
Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPG 137
+ G G GP GPPG QGPPG
Sbjct: 657 GTDGPK-----GASGPAGPPGAQGPPG 678
Score = 32.7 bits (73), Expect = 0.53
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 15/36 (41%)
Query: 122 GLPGPPGPPGPQ---------------GPPGPIIPP 142
G+PGP GPPGP+ GPPGP PP
Sbjct: 1110 GIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPP 1145
Score = 31.6 bits (70), Expect = 1.2
Identities = 39/126 (30%), Positives = 44/126 (34%), Gaps = 34/126 (26%)
Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKA 116
P A G A P A P GL Q ER + G+ G K RG
Sbjct: 661 PKGASGPAGPPGAQGPPGL---QGMPGERGAA----------------GIAGPKGDRGDV 701
Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPV 176
+ G G PG G +G GPI PP A E+ E P GPAG
Sbjct: 702 GEK--GPEGAPGKDGGRGLTGPIGPPGP-----------AGANGEKGEVGP--PGPAGSA 746
Query: 177 AASLAP 182
A AP
Sbjct: 747 GARGAP 752
Score = 30.4 bits (67), Expect = 2.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
G +G K + G A G PG GPPG QG PG
Sbjct: 657 GTDGPKGASGPA-----GPPGAQGPPGLQGMPG 684
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 49.3 bits (116), Expect = 5e-06
Identities = 60/184 (32%), Positives = 72/184 (39%), Gaps = 26/184 (14%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTA--ERAHSVDP 91
G+A P+ RP P+ P AG + P E PAG Q P A V P
Sbjct: 1096 GAAGPIGIPGRPG----PQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGP 1151
Query: 92 RDAWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPI-IPPEALLKEF 149
DKG G+ +G K K + G PGP GP GP G PGP E +
Sbjct: 1152 PG------EDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQ 1205
Query: 150 QLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
Q L + R P GP GPV L + GE + GDV + P PG
Sbjct: 1206 QGLFGQKGDEGPRGFP-----GPPGPV--GLQGLPGPPGEKGE--TGDV-GQMGPPGPPG 1255
Query: 210 PRAP 213
PR P
Sbjct: 1256 PRGP 1259
Score = 45.1 bits (105), Expect = 1e-04
Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162
DKG +G+ G G PGP GPPG +GPPGP PE E KGA +
Sbjct: 1364 DKGDDGEPGQTGSPGPT--GEPGPSGPPGKRGPPGP-AGPEGRQGE-----KGA-KGEAG 1414
Query: 163 AEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
E P GP GP A P G D + + P +PGP P
Sbjct: 1415 LEGPPGKTGPIGPQGAPGKP-----GPDGLRGIPGPVGEQGLPGSPGPDGP 1460
Score = 39.7 bits (91), Expect = 0.004
Identities = 40/139 (28%), Positives = 48/139 (34%), Gaps = 39/139 (28%)
Query: 36 GSASPMSAKSRP----RCGPFPRSHPPR-AGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90
GS P+ P GP + PP G + EP + P PT E S
Sbjct: 1336 GSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPG-------PTGEPGPSGP 1388
Query: 91 PRDAWMLFV-----RQSDKGVNGKKRSRGKAKKLK----------------FGLPGP--- 126
P RQ +KG G+ G K G+PGP
Sbjct: 1389 PGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGE 1448
Query: 127 ---PGPPGPQGPPGPIIPP 142
PG PGP GPPGP+ PP
Sbjct: 1449 QGLPGSPGPDGPPGPMGPP 1467
Score = 37.7 bits (86), Expect = 0.016
Identities = 34/104 (32%), Positives = 42/104 (40%), Gaps = 12/104 (11%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSE--ANRPAGLAVFQEPTAERAHSVDPRD 93
GS P + + P P R P AG E E A AGL E + + P+
Sbjct: 1375 GSPGP-TGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGL----EGPPGKTGPIGPQG 1429
Query: 94 AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
A +G+ G +G G PGP GPPGP GPPG
Sbjct: 1430 APGKPGPDGLRGIPGPVGEQGLP-----GSPGPDGPPGPMGPPG 1468
Score = 37.7 bits (86), Expect = 0.016
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
+ D+G+ G + S G K + G+ GP GP GP GPPG PP KGA
Sbjct: 1500 KGDRGLPGPQGSSGP--KGEQGITGPSGPIGPPGPPGLPGPPGP---------KGAKGSS 1548
Query: 161 ERAEPE-----PCTCGPAGPVAASLAPVSATA 187
P+ P GP GP + P+ A
Sbjct: 1549 GPTGPKGEAGHPGPPGPPGPPGEVIQPLPIQA 1580
Score = 36.6 bits (83), Expect = 0.037
Identities = 53/185 (28%), Positives = 62/185 (33%), Gaps = 49/185 (26%)
Query: 36 GSASPMSAKSRPRCG--PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRD 93
G PM + P P + P AG E + PAGL P R
Sbjct: 1006 GETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPG-PAGLPGKDGPPGLRGFP----- 1059
Query: 94 AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLL 153
D+G+ G + G LK G GPPGPPGP G PG P A
Sbjct: 1060 --------GDRGLPGPVGALG----LK-GNEGPPGPPGPAGSPGERGPAGA--------- 1097
Query: 154 KGAVRQRERAEPEPCTCGPAGPVAASLAP----VSATAGEDDDDVVGDVLALLAAPLA-P 208
G + R P+ GP GP AP AG D L P+ P
Sbjct: 1098 AGPIGIPGRPGPQ----GPPGPAGEKGAPGEKGPQGPAGRDG----------LQGPVGLP 1143
Query: 209 GPRAP 213
GP P
Sbjct: 1144 GPAGP 1148
Score = 36.2 bits (82), Expect = 0.048
Identities = 38/111 (34%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGG-EAEPSEANRPAGLAVFQEPTAE--------RA 86
G A PM RP GP PP +GG + EP + P G Q P RA
Sbjct: 559 GPAGPMGLTGRP--GPVG---PPGSGGLKGEPGDVG-PQGPRGVQGPPGPAGKPGRRGRA 612
Query: 87 HSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
S R + D+G +G G+ K G PGP GPPGP G G
Sbjct: 613 GSDGARGMPGQTGPKGDRGFDGLAGLPGE--KGHRGDPGPSGPPGPPGDDG 661
Score = 36.2 bits (82), Expect = 0.048
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 19/93 (20%)
Query: 47 PRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGV 106
P+ P +P G + EP EA P GL P + + +KG
Sbjct: 1268 PQGPPGGIGNPGAVGEKGEPGEAGEP-GLPGEGGPPGPKGE-------------RGEKGE 1313
Query: 107 NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
+G + G G GPPG GP+G PGP+
Sbjct: 1314 SGPSGAAGPP-----GPKGPPGDDGPKGSPGPV 1341
Score = 35.8 bits (81), Expect = 0.062
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 122 GLPGPPGPPG---PQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEP 167
GLPG PGP G P+GPPGP PP + Q KG V + EP P
Sbjct: 673 GLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNV--GPQGEPGP 719
Score = 35.4 bits (80), Expect = 0.082
Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 20/99 (20%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
+ +G+ G+K G G PGPPGP G QG PGP P E KG
Sbjct: 1203 RGQQGLFGQKGDEGPR-----GFPGPPGPVGLQGLPGP--PGE----------KGETGDV 1245
Query: 161 ERAEPEPCTCGPAGPVAASLA--PVSATAGEDDDDVVGD 197
+ P P GP GP A A P G + VG+
Sbjct: 1246 GQMGP-PGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGE 1283
Score = 34.7 bits (78), Expect = 0.14
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 105 GVNGKKRSRGKAKKLKFGL--PGPPGPPGPQGPPGP 138
G G+K +G+ ++ G+ GPPGP GP G PGP
Sbjct: 447 GPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGP 482
Score = 34.3 bits (77), Expect = 0.18
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 105 GVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPG 137
GV G + G+ + + G PGPPGPPG QG PG
Sbjct: 997 GVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPG 1030
Score = 33.1 bits (74), Expect = 0.41
Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 15/103 (14%)
Query: 53 PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112
P HP + G E P P D L + +KG +G
Sbjct: 761 PPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRG--LKGTKGEKGEDGFPGF 818
Query: 113 RG----KAKKLKFGLPGPPGPPGPQGP---------PGPIIPP 142
+G K + + G PGP G GP+GP PGP+ PP
Sbjct: 819 KGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPP 861
Score = 33.1 bits (74), Expect = 0.41
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 8/34 (23%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
G NG+K RG PG PGP G +GP GP
Sbjct: 892 GANGEKGGRGT--------PGKPGPRGQRGPTGP 917
Score = 33.1 bits (74), Expect = 0.41
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 105 GVNGKKRSRGKAK-KLKFGLPGPPGPPGPQGPPGPIIP 141
G+ G RG+ + K G PGPPG GPQGP G P
Sbjct: 973 GLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGP 1010
Score = 32.7 bits (73), Expect = 0.53
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 105 GVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGPI 139
G NG G +K K G+PG PG PG QGP G I
Sbjct: 850 GPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSI 885
Score = 32.7 bits (73), Expect = 0.53
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 17/53 (32%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQ---------------GPPGPIIPP 142
G G+K G+A + GLPG GPPGP+ GPPGP PP
Sbjct: 1279 GAVGEKGEPGEAGEP--GLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPP 1329
Score = 32.0 bits (71), Expect = 0.90
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 10/45 (22%)
Query: 104 KGVNGKKRSRGKA----------KKLKFGLPGPPGPPGPQGPPGP 138
+G+ GK +G + ++ G GP G PGP+GPPGP
Sbjct: 924 RGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGP 968
Score = 31.6 bits (70), Expect = 1.2
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
G G+K GK GLPG PG GP G PG PP
Sbjct: 739 GPPGEKGPLGKP-----GLPGMPGADGPPGHPGKEGPP 771
Score = 30.8 bits (68), Expect = 2.0
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G GPPG PG +GPPG
Sbjct: 757 GADGPPGHPGKEGPPG 772
Score = 30.4 bits (67), Expect = 2.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPP 142
++ + L GP GP G G PGP+ PP
Sbjct: 551 QQARLALRGPAGPMGLTGRPGPVGPP 576
Score = 30.4 bits (67), Expect = 2.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGP GPPGP G G
Sbjct: 958 GFPGPKGPPGPPGKDG 973
Score = 30.0 bits (66), Expect = 3.4
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 125 GPPGPPGPQGPPGPIIPP 142
GP GP G QGPPGP P
Sbjct: 589 GPQGPRGVQGPPGPAGKP 606
Score = 29.6 bits (65), Expect = 4.5
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
Q + G G++ + G GLPGP G GP G GP+ P
Sbjct: 714 QGEPGPPGQQGNPGAQ-----GLPGPQGAIGPPGEKGPLGKP 750
Score = 29.6 bits (65), Expect = 4.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 101 QSDKGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPG 137
+ D+G G RG+ + G GP G PGP GPPG
Sbjct: 825 KGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPG 862
Score = 29.6 bits (65), Expect = 4.5
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
++G NG + G G GPPGPPG G PG
Sbjct: 947 ERGPNGPQGPTGFP-----GPKGPPGPPGKDGLPG 976
Score = 29.3 bits (64), Expect = 5.8
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 122 GLPGPPGPPGPQGPPGPIIPP 142
GL G PG GPQGP G PP
Sbjct: 580 GLKGEPGDVGPQGPRGVQGPP 600
Score = 29.3 bits (64), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
G++G+ +G G G PGPPG QG PG
Sbjct: 700 GMDGQPGPKGNV-----GPQGEPGPPGQQGNPG 727
Score = 28.5 bits (62), Expect = 10.0
Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 122 GLPGPP---GPPGPQGPPGPIIPP 142
GLPGPP GP G G PG PP
Sbjct: 478 GLPGPPGTMGPTGQVGDPGERGPP 501
Score = 28.5 bits (62), Expect = 10.0
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGP---------PGPQGPPGP 138
KG +G K +G + GL GPPG PGPQG GP
Sbjct: 1473 KGDSGPKGEKGHPGLI--GLIGPPGEQGEKGDRGLPGPQGSSGP 1514
>gi|5901944 elastin microfibril interfacer 1 [Homo sapiens]
Length = 1016
Score = 49.3 bits (116), Expect = 5e-06
Identities = 48/155 (30%), Positives = 61/155 (39%), Gaps = 50/155 (32%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181
G GPPGPPG QGPPGP PP + K+ Q +G + GP GP
Sbjct: 817 GEAGPPGPPGLQGPPGPAGPPGSPGKDGQ---EGPI-------------GPPGP------ 854
Query: 182 PVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVYY 241
+ + V G AP AP P+ A L R + R L G YY
Sbjct: 855 -------QGEQGVEG-------APAAPVPQVAFSAALSLPRSEPGTVPFDRVLLNDGGYY 900
Query: 242 LPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATL 276
P+ +G + AP+AG Y L+A L
Sbjct: 901 DPE--------------TGVFTAPLAGRYLLSAVL 921
Score = 28.9 bits (63), Expect = 7.6
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 120 KFGLPGPPGPPGPQGPPG 137
K G GP GPPGPQG G
Sbjct: 842 KDGQEGPIGPPGPQGEQG 859
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 47.8 bits (112), Expect = 2e-05
Identities = 57/184 (30%), Positives = 69/184 (37%), Gaps = 26/184 (14%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93
GS P+ RP P+ P AG + P E P G Q P + P
Sbjct: 938 GSGGPIGPPGRPG----PQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGV 993
Query: 94 AWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPI---IPPEALLKEF 149
A DKG G +G K K + G PGPPGP GP G PG P A +
Sbjct: 994 AG----EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1049
Query: 150 QLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
KG R GP GP+ L + +GE + GDV + P PG
Sbjct: 1050 HFGAKGDEGTRG-------FNGPPGPI--GLQGLPGPSGEKGE--TGDV-GPMGPPGPPG 1097
Query: 210 PRAP 213
PR P
Sbjct: 1098 PRGP 1101
Score = 45.8 bits (107), Expect = 6e-05
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
GP PP G A P+ A+ P G +P ++ + Q + GV G
Sbjct: 1088 GPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI-QGEPGVKGP 1146
Query: 110 KRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
+ RG+ K + G PG PGPPGP+GP G
Sbjct: 1147 RGERGE--KGESGQPGEPGPPGPKGPTG 1172
Score = 40.4 bits (93), Expect = 0.003
Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 50 GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
GP P P AG + EP A P G + R + P + Q G +G
Sbjct: 1025 GPIGPVGQPGAAGADGEPG-ARGPQGHFGAKGDEGTRGFNGPPGPIGL----QGLPGPSG 1079
Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
+K G G GPPGPPGP+GP GP
Sbjct: 1080 EKGETGDV-----GPMGPPGPPGPRGPAGP 1104
Score = 37.7 bits (86), Expect = 0.016
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117
P A GE + +G + PT R PR A + KG +G G
Sbjct: 733 PGASGEKGARGLSGKSGPRGERGPTGPRGQR-GPRGATG---KSGAKGTSGGDGPHGPPG 788
Query: 118 KLKFGLPGPPGP---PGPQGPPGP 138
+ GLPGP GP PGP+GPPGP
Sbjct: 789 ER--GLPGPQGPNGFPGPKGPPGP 810
Score = 37.7 bits (86), Expect = 0.016
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
G P + P G + P A G+A P P GL + + P
Sbjct: 1274 GKPGPDGLRGLP--GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1331
Query: 96 MLFV-----RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
++ + D+G+ G + S G+ K + G+PG GP GP GPPG
Sbjct: 1332 LIGPPGEQGEKGDRGLPGPQGSPGQ--KGEMGIPGASGPIGPGGPPG 1376
Score = 36.6 bits (83), Expect = 0.037
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
+G +G K RG+ + G PG PGP G GPPGP+
Sbjct: 1198 RGQDGAKGDRGEDGEP--GQPGSPGPTGENGPPGPL 1231
Score = 35.8 bits (81), Expect = 0.062
Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLP-GPPGPPGPQGPPGPI----IPPEALLKEFQLLLKG 155
+ G G S G+ G P GPPG PGPQGPPG +P E KG
Sbjct: 919 EGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE----------KG 968
Query: 156 AV--RQRERAEPEPCTCGPAGPVAASLAPVSATAGED-DDDVVGD 197
+ R+ + GPAGP AGED D VGD
Sbjct: 969 PIGPTGRDGVQGPVGLPGPAGP--------PGVAGEDGDKGEVGD 1005
Score = 35.0 bits (79), Expect = 0.11
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 105 GVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPG 137
GV G + + G+ + + G PGPPGPPG QG PG
Sbjct: 839 GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPG 872
Score = 34.7 bits (78), Expect = 0.14
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 56 HPPRAGGEAEPSEANRPAGLAV-FQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114
H + + +PS +RP Q+PT + + + + ++ G G K +G
Sbjct: 242 HRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEI-LESSLLPPLEEAAHGPRGLKGEKG 300
Query: 115 KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
+ L+ G+ GPPGP+GP G I PP
Sbjct: 301 EPAVLEPGML-VEGPPGPEGPAGLIGPP 327
Score = 34.3 bits (77), Expect = 0.18
Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 62 GEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKF 121
G P P G A P ER H P Q G GK+ ++G
Sbjct: 833 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPG----EQGLPGTAGKEGTKGD------ 882
Query: 122 GLPGPPGPPGPQGPPG 137
PGPPG PG GP G
Sbjct: 883 --PGPPGAPGKDGPAG 896
Score = 33.9 bits (76), Expect = 0.24
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
G +G+K +GK GLPG PG GP G PG PP
Sbjct: 581 GPHGEKGPQGKP-----GLPGMPGSDGPPGHPGKEGPP 613
Score = 32.3 bits (72), Expect = 0.69
Identities = 36/117 (30%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAE---PSEANRPAGLAVFQEPTAERAHSVD-- 90
G PM RP GP + P GE+ P P GL R +
Sbjct: 401 GPPGPMGYTGRP--GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADG 458
Query: 91 ----PRDAWMLFVRQSD--KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
P D + R D G+ G+K RG GLPGPPG G +G G I P
Sbjct: 459 ARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGP 513
Score = 32.0 bits (71), Expect = 0.90
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 57 PPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114
PP G + EP E+ P G + P ER + + + G G K G
Sbjct: 1122 PP--GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG-------QPGEPGPPGPKGPTG 1172
Query: 115 ----KAKKLKFGLPGPPGPPGPQGPPG 137
K G PG PGPPG GP G
Sbjct: 1173 DDGPKGNPGPVGFPGDPGPPGEGGPRG 1199
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 104 KGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138
+G+ G+ RG K G+PGPPG G GP GP
Sbjct: 514 RGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGP 549
Score = 31.2 bits (69), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 117 KKLKFGLPGPPGPPGPQGPPGPI 139
+K K G+PG PG PG QGP G +
Sbjct: 705 EKGKLGVPGLPGYPGRQGPKGSL 727
Score = 31.2 bits (69), Expect = 1.5
Identities = 30/107 (28%), Positives = 35/107 (32%), Gaps = 32/107 (29%)
Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117
P G P+ N P G P +R + P RQ KG G + G
Sbjct: 1213 PGQPGSPGPTGENGPPG------PLGKRGPAGSPGSEG----RQGGKGAKGDPGAIGAPG 1262
Query: 118 KL-KFGLPGPPGPPGPQG---------------------PPGPIIPP 142
K G GP G PGP G PPGP+ PP
Sbjct: 1263 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1309
Score = 30.8 bits (68), Expect = 2.0
Identities = 35/110 (31%), Positives = 40/110 (36%), Gaps = 31/110 (28%)
Query: 105 GVNGKKRSRGKAK-KLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163
G+ G RG+ + K G PGPPG GPQG G P ER
Sbjct: 815 GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP-----------------MGERG 857
Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
P GP GP P TAG+ + GD P APG P
Sbjct: 858 HP-----GPPGPPGEQGLP--GTAGK--EGTKGDP----GPPGAPGKDGP 894
Score = 30.8 bits (68), Expect = 2.0
Identities = 36/139 (25%), Positives = 48/139 (34%), Gaps = 17/139 (12%)
Query: 53 PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112
PR G +P E P + PT + +P D G G+
Sbjct: 1146 PRGERGEKGESGQPGEPGPPGP----KGPTGDDGPKGNPGPVGF----PGDPGPPGEGGP 1197
Query: 113 RGK-AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR----ERAEP-- 165
RG+ K G G PG PG GP G PP L K G+ ++ + +P
Sbjct: 1198 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1257
Query: 166 --EPCTCGPAGPVAASLAP 182
P GP GP + P
Sbjct: 1258 IGAPGKTGPVGPAGPAGKP 1276
Score = 30.4 bits (67), Expect = 2.6
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
GV G +G L G G PGPPG QG PG
Sbjct: 539 GVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPG 569
Score = 30.4 bits (67), Expect = 2.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGP GPPGP G G
Sbjct: 800 GFPGPKGPPGPPGKDG 815
Score = 30.0 bits (66), Expect = 3.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPP 142
++ + L GPPGP G G PGP+ P
Sbjct: 393 QQARLALRGPPGPMGYTGRPGPLGQP 418
Score = 30.0 bits (66), Expect = 3.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 122 GLPGPPGPPGPQGPPGPIIPP 142
G G GPPG GPPG +I P
Sbjct: 1397 GEKGVQGPPGHPGPPGEVIQP 1417
Score = 29.6 bits (65), Expect = 4.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGP G PG +GPPG
Sbjct: 331 GNPGPVGDPGERGPPG 346
Score = 29.6 bits (65), Expect = 4.5
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 9/30 (30%)
Query: 122 GLPGPPGPPGPQGPP---------GPIIPP 142
G GP GPPGP G P GPI PP
Sbjct: 917 GNEGPSGPPGPAGSPGERGAAGSGGPIGPP 946
Score = 28.9 bits (63), Expect = 7.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 122 GLPGPPGPPGPQGPPG 137
G GPPGPPG G PG
Sbjct: 803 GPKGPPGPPGKDGLPG 818
Score = 28.5 bits (62), Expect = 10.0
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 122 GLPGPPGPPG---PQGPPGPIIPP 142
GLPG GP G P+GPPG PP
Sbjct: 515 GLPGESGPRGLLGPKGPPGIPGPP 538
Score = 28.5 bits (62), Expect = 10.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
Q + G G++ + G GLPGP G GP G GP
Sbjct: 556 QGEPGPPGQQGTPGTQ-----GLPGPQGAIGPHGEKGP 588
Score = 28.5 bits (62), Expect = 10.0
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
+ D+G G SRG+ GP GP G GP G PP + ++ +L + G
Sbjct: 667 KGDRGEVGVPGSRGE--------DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYP 718
Query: 161 ERAEPEPCTCGPAGPVAA 178
R P+ P P A+
Sbjct: 719 GRQGPKGSLGFPGFPGAS 736
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 47.8 bits (112), Expect = 2e-05
Identities = 57/184 (30%), Positives = 69/184 (37%), Gaps = 26/184 (14%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93
GS P+ RP P+ P AG + P E P G Q P + P
Sbjct: 917 GSGGPIGPPGRPG----PQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGV 972
Query: 94 AWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPI---IPPEALLKEF 149
A DKG G +G K K + G PGPPGP GP G PG P A +
Sbjct: 973 AG----EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1028
Query: 150 QLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
KG R GP GP+ L + +GE + GDV + P PG
Sbjct: 1029 HFGAKGDEGTRG-------FNGPPGPI--GLQGLPGPSGEKGE--TGDV-GPMGPPGPPG 1076
Query: 210 PRAP 213
PR P
Sbjct: 1077 PRGP 1080
Score = 45.8 bits (107), Expect = 6e-05
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
GP PP G A P+ A+ P G +P ++ + Q + GV G
Sbjct: 1067 GPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI-QGEPGVKGP 1125
Query: 110 KRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
+ RG+ K + G PG PGPPGP+GP G
Sbjct: 1126 RGERGE--KGESGQPGEPGPPGPKGPTG 1151
Score = 40.4 bits (93), Expect = 0.003
Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 50 GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
GP P P AG + EP A P G + R + P + Q G +G
Sbjct: 1004 GPIGPVGQPGAAGADGEPG-ARGPQGHFGAKGDEGTRGFNGPPGPIGL----QGLPGPSG 1058
Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
+K G G GPPGPPGP+GP GP
Sbjct: 1059 EKGETGDV-----GPMGPPGPPGPRGPAGP 1083
Score = 37.7 bits (86), Expect = 0.016
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 22/87 (25%)
Query: 56 HPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGK 115
H + + +PS +RP QEP ++ AH G G K +G+
Sbjct: 242 HRAQRSPQQQPSRLHRPQN----QEPQSQAAH-----------------GPRGLKGEKGE 280
Query: 116 AKKLKFGLPGPPGPPGPQGPPGPIIPP 142
L+ G+ GPPGP+GP G I PP
Sbjct: 281 PAVLEPGML-VEGPPGPEGPAGLIGPP 306
Score = 37.7 bits (86), Expect = 0.016
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117
P A GE + +G + PT R PR A + KG +G G
Sbjct: 712 PGASGEKGARGLSGKSGPRGERGPTGPRGQR-GPRGATG---KSGAKGTSGGDGPHGPPG 767
Query: 118 KLKFGLPGPPGP---PGPQGPPGP 138
+ GLPGP GP PGP+GPPGP
Sbjct: 768 ER--GLPGPQGPNGFPGPKGPPGP 789
Score = 37.7 bits (86), Expect = 0.016
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
G P + P G + P A G+A P P GL + + P
Sbjct: 1253 GKPGPDGLRGLP--GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1310
Query: 96 MLFV-----RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
++ + D+G+ G + S G+ K + G+PG GP GP GPPG
Sbjct: 1311 LIGPPGEQGEKGDRGLPGPQGSPGQ--KGEMGIPGASGPIGPGGPPG 1355
Score = 36.6 bits (83), Expect = 0.037
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
+G +G K RG+ + G PG PGP G GPPGP+
Sbjct: 1177 RGQDGAKGDRGEDGEP--GQPGSPGPTGENGPPGPL 1210
Score = 35.8 bits (81), Expect = 0.062
Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLP-GPPGPPGPQGPPGPI----IPPEALLKEFQLLLKG 155
+ G G S G+ G P GPPG PGPQGPPG +P E KG
Sbjct: 898 EGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE----------KG 947
Query: 156 AV--RQRERAEPEPCTCGPAGPVAASLAPVSATAGED-DDDVVGD 197
+ R+ + GPAGP AGED D VGD
Sbjct: 948 PIGPTGRDGVQGPVGLPGPAGP--------PGVAGEDGDKGEVGD 984
Score = 35.0 bits (79), Expect = 0.11
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 105 GVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPG 137
GV G + + G+ + + G PGPPGPPG QG PG
Sbjct: 818 GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPG 851
Score = 34.3 bits (77), Expect = 0.18
Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 62 GEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKF 121
G P P G A P ER H P Q G GK+ ++G
Sbjct: 812 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPG----EQGLPGTAGKEGTKGD------ 861
Query: 122 GLPGPPGPPGPQGPPG 137
PGPPG PG GP G
Sbjct: 862 --PGPPGAPGKDGPAG 875
Score = 33.9 bits (76), Expect = 0.24
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
G +G+K +GK GLPG PG GP G PG PP
Sbjct: 560 GPHGEKGPQGKP-----GLPGMPGSDGPPGHPGKEGPP 592
Score = 32.3 bits (72), Expect = 0.69
Identities = 36/117 (30%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAE---PSEANRPAGLAVFQEPTAERAHSVD-- 90
G PM RP GP + P GE+ P P GL R +
Sbjct: 380 GPPGPMGYTGRP--GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADG 437
Query: 91 ----PRDAWMLFVRQSD--KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
P D + R D G+ G+K RG GLPGPPG G +G G I P
Sbjct: 438 ARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGP 492
Score = 32.0 bits (71), Expect = 0.90
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 57 PPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114
PP G + EP E+ P G + P ER + + + G G K G
Sbjct: 1101 PP--GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG-------QPGEPGPPGPKGPTG 1151
Query: 115 ----KAKKLKFGLPGPPGPPGPQGPPG 137
K G PG PGPPG GP G
Sbjct: 1152 DDGPKGNPGPVGFPGDPGPPGEGGPRG 1178
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 104 KGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138
+G+ G+ RG K G+PGPPG G GP GP
Sbjct: 493 RGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGP 528
Score = 31.2 bits (69), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 117 KKLKFGLPGPPGPPGPQGPPGPI 139
+K K G+PG PG PG QGP G +
Sbjct: 684 EKGKLGVPGLPGYPGRQGPKGSL 706
Score = 31.2 bits (69), Expect = 1.5
Identities = 30/107 (28%), Positives = 35/107 (32%), Gaps = 32/107 (29%)
Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117
P G P+ N P G P +R + P RQ KG G + G
Sbjct: 1192 PGQPGSPGPTGENGPPG------PLGKRGPAGSPGSEG----RQGGKGAKGDPGAIGAPG 1241
Query: 118 KL-KFGLPGPPGPPGPQG---------------------PPGPIIPP 142
K G GP G PGP G PPGP+ PP
Sbjct: 1242 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1288
Score = 30.8 bits (68), Expect = 2.0
Identities = 35/110 (31%), Positives = 40/110 (36%), Gaps = 31/110 (28%)
Query: 105 GVNGKKRSRGKAK-KLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163
G+ G RG+ + K G PGPPG GPQG G P ER
Sbjct: 794 GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP-----------------MGERG 836
Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
P GP GP P TAG+ + GD P APG P
Sbjct: 837 HP-----GPPGPPGEQGLP--GTAGK--EGTKGDP----GPPGAPGKDGP 873
Score = 30.8 bits (68), Expect = 2.0
Identities = 36/139 (25%), Positives = 48/139 (34%), Gaps = 17/139 (12%)
Query: 53 PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112
PR G +P E P + PT + +P D G G+
Sbjct: 1125 PRGERGEKGESGQPGEPGPPGP----KGPTGDDGPKGNPGPVGF----PGDPGPPGEGGP 1176
Query: 113 RGK-AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR----ERAEP-- 165
RG+ K G G PG PG GP G PP L K G+ ++ + +P
Sbjct: 1177 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1236
Query: 166 --EPCTCGPAGPVAASLAP 182
P GP GP + P
Sbjct: 1237 IGAPGKTGPVGPAGPAGKP 1255
Score = 30.4 bits (67), Expect = 2.6
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
GV G +G L G G PGPPG QG PG
Sbjct: 518 GVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPG 548
Score = 30.4 bits (67), Expect = 2.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGP GPPGP G G
Sbjct: 779 GFPGPKGPPGPPGKDG 794
Score = 30.0 bits (66), Expect = 3.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPP 142
++ + L GPPGP G G PGP+ P
Sbjct: 372 QQARLALRGPPGPMGYTGRPGPLGQP 397
Score = 30.0 bits (66), Expect = 3.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 122 GLPGPPGPPGPQGPPGPIIPP 142
G G GPPG GPPG +I P
Sbjct: 1376 GEKGVQGPPGHPGPPGEVIQP 1396
Score = 29.6 bits (65), Expect = 4.5
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 9/30 (30%)
Query: 122 GLPGPPGPPGPQGPP---------GPIIPP 142
G GP GPPGP G P GPI PP
Sbjct: 896 GNEGPSGPPGPAGSPGERGAAGSGGPIGPP 925
Score = 28.9 bits (63), Expect = 7.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 122 GLPGPPGPPGPQGPPG 137
G GPPGPPG G PG
Sbjct: 782 GPKGPPGPPGKDGLPG 797
Score = 28.5 bits (62), Expect = 10.0
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 122 GLPGPPGPPG---PQGPPGPIIPP 142
GLPG GP G P+GPPG PP
Sbjct: 494 GLPGESGPRGLLGPKGPPGIPGPP 517
Score = 28.5 bits (62), Expect = 10.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
Q + G G++ + G GLPGP G GP G GP
Sbjct: 535 QGEPGPPGQQGTPGTQ-----GLPGPQGAIGPHGEKGP 567
Score = 28.5 bits (62), Expect = 10.0
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
+ D+G G SRG+ GP GP G GP G PP + ++ +L + G
Sbjct: 646 KGDRGEVGVPGSRGE--------DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYP 697
Query: 161 ERAEPEPCTCGPAGPVAA 178
R P+ P P A+
Sbjct: 698 GRQGPKGSLGFPGFPGAS 715
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 47.8 bits (112), Expect = 2e-05
Identities = 57/184 (30%), Positives = 69/184 (37%), Gaps = 26/184 (14%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93
GS P+ RP P+ P AG + P E P G Q P + P
Sbjct: 1024 GSGGPIGPPGRPG----PQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGV 1079
Query: 94 AWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPI---IPPEALLKEF 149
A DKG G +G K K + G PGPPGP GP G PG P A +
Sbjct: 1080 AG----EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1135
Query: 150 QLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
KG R GP GP+ L + +GE + GDV + P PG
Sbjct: 1136 HFGAKGDEGTRG-------FNGPPGPI--GLQGLPGPSGEKGE--TGDV-GPMGPPGPPG 1183
Query: 210 PRAP 213
PR P
Sbjct: 1184 PRGP 1187
Score = 45.8 bits (107), Expect = 6e-05
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
GP PP G A P+ A+ P G +P ++ + Q + GV G
Sbjct: 1174 GPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI-QGEPGVKGP 1232
Query: 110 KRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
+ RG+ K + G PG PGPPGP+GP G
Sbjct: 1233 RGERGE--KGESGQPGEPGPPGPKGPTG 1258
Score = 40.4 bits (93), Expect = 0.003
Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 50 GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
GP P P AG + EP A P G + R + P + Q G +G
Sbjct: 1111 GPIGPVGQPGAAGADGEPG-ARGPQGHFGAKGDEGTRGFNGPPGPIGL----QGLPGPSG 1165
Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
+K G G GPPGPPGP+GP GP
Sbjct: 1166 EKGETGDV-----GPMGPPGPPGPRGPAGP 1190
Score = 37.7 bits (86), Expect = 0.016
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117
P A GE + +G + PT R PR A + KG +G G
Sbjct: 819 PGASGEKGARGLSGKSGPRGERGPTGPRGQR-GPRGATG---KSGAKGTSGGDGPHGPPG 874
Query: 118 KLKFGLPGPPGP---PGPQGPPGP 138
+ GLPGP GP PGP+GPPGP
Sbjct: 875 ER--GLPGPQGPNGFPGPKGPPGP 896
Score = 37.7 bits (86), Expect = 0.016
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
G P + P G + P A G+A P P GL + + P
Sbjct: 1360 GKPGPDGLRGLP--GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1417
Query: 96 MLFV-----RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
++ + D+G+ G + S G+ K + G+PG GP GP GPPG
Sbjct: 1418 LIGPPGEQGEKGDRGLPGPQGSPGQ--KGEMGIPGASGPIGPGGPPG 1462
Score = 36.6 bits (83), Expect = 0.037
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
+G +G K RG+ + G PG PGP G GPPGP+
Sbjct: 1284 RGQDGAKGDRGEDGEP--GQPGSPGPTGENGPPGPL 1317
Score = 35.8 bits (81), Expect = 0.062
Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLP-GPPGPPGPQGPPGPI----IPPEALLKEFQLLLKG 155
+ G G S G+ G P GPPG PGPQGPPG +P E KG
Sbjct: 1005 EGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE----------KG 1054
Query: 156 AV--RQRERAEPEPCTCGPAGPVAASLAPVSATAGED-DDDVVGD 197
+ R+ + GPAGP AGED D VGD
Sbjct: 1055 PIGPTGRDGVQGPVGLPGPAGP--------PGVAGEDGDKGEVGD 1091
Score = 35.0 bits (79), Expect = 0.11
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 105 GVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPG 137
GV G + + G+ + + G PGPPGPPG QG PG
Sbjct: 925 GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPG 958
Score = 34.3 bits (77), Expect = 0.18
Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 62 GEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKF 121
G P P G A P ER H P Q G GK+ ++G
Sbjct: 919 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPG----EQGLPGTAGKEGTKGD------ 968
Query: 122 GLPGPPGPPGPQGPPG 137
PGPPG PG GP G
Sbjct: 969 --PGPPGAPGKDGPAG 982
Score = 33.9 bits (76), Expect = 0.24
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
G +G+K +GK GLPG PG GP G PG PP
Sbjct: 667 GPHGEKGPQGKP-----GLPGMPGSDGPPGHPGKEGPP 699
Score = 32.3 bits (72), Expect = 0.69
Identities = 36/117 (30%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAE---PSEANRPAGLAVFQEPTAERAHSVD-- 90
G PM RP GP + P GE+ P P GL R +
Sbjct: 487 GPPGPMGYTGRP--GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADG 544
Query: 91 ----PRDAWMLFVRQSD--KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
P D + R D G+ G+K RG GLPGPPG G +G G I P
Sbjct: 545 ARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGP 599
Score = 32.0 bits (71), Expect = 0.90
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
G G K +G+ L+ G+ GPPGP+GP G I PP
Sbjct: 377 GPRGLKGEKGEPAVLEPGML-VEGPPGPEGPAGLIGPP 413
Score = 32.0 bits (71), Expect = 0.90
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 57 PPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114
PP G + EP E+ P G + P ER + + + G G K G
Sbjct: 1208 PP--GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG-------QPGEPGPPGPKGPTG 1258
Query: 115 ----KAKKLKFGLPGPPGPPGPQGPPG 137
K G PG PGPPG GP G
Sbjct: 1259 DDGPKGNPGPVGFPGDPGPPGEGGPRG 1285
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 104 KGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138
+G+ G+ RG K G+PGPPG G GP GP
Sbjct: 600 RGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGP 635
Score = 31.2 bits (69), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 117 KKLKFGLPGPPGPPGPQGPPGPI 139
+K K G+PG PG PG QGP G +
Sbjct: 791 EKGKLGVPGLPGYPGRQGPKGSL 813
Score = 31.2 bits (69), Expect = 1.5
Identities = 30/107 (28%), Positives = 35/107 (32%), Gaps = 32/107 (29%)
Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117
P G P+ N P G P +R + P RQ KG G + G
Sbjct: 1299 PGQPGSPGPTGENGPPG------PLGKRGPAGSPGSEG----RQGGKGAKGDPGAIGAPG 1348
Query: 118 KL-KFGLPGPPGPPGPQG---------------------PPGPIIPP 142
K G GP G PGP G PPGP+ PP
Sbjct: 1349 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1395
Score = 30.8 bits (68), Expect = 2.0
Identities = 35/110 (31%), Positives = 40/110 (36%), Gaps = 31/110 (28%)
Query: 105 GVNGKKRSRGKAK-KLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163
G+ G RG+ + K G PGPPG GPQG G P ER
Sbjct: 901 GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP-----------------MGERG 943
Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
P GP GP P TAG+ + GD P APG P
Sbjct: 944 HP-----GPPGPPGEQGLP--GTAGK--EGTKGDP----GPPGAPGKDGP 980
Score = 30.8 bits (68), Expect = 2.0
Identities = 36/139 (25%), Positives = 48/139 (34%), Gaps = 17/139 (12%)
Query: 53 PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112
PR G +P E P + PT + +P D G G+
Sbjct: 1232 PRGERGEKGESGQPGEPGPPGP----KGPTGDDGPKGNPGPVGF----PGDPGPPGEGGP 1283
Query: 113 RGK-AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR----ERAEP-- 165
RG+ K G G PG PG GP G PP L K G+ ++ + +P
Sbjct: 1284 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1343
Query: 166 --EPCTCGPAGPVAASLAP 182
P GP GP + P
Sbjct: 1344 IGAPGKTGPVGPAGPAGKP 1362
Score = 30.4 bits (67), Expect = 2.6
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
GV G +G L G G PGPPG QG PG
Sbjct: 625 GVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPG 655
Score = 30.4 bits (67), Expect = 2.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGP GPPGP G G
Sbjct: 886 GFPGPKGPPGPPGKDG 901
Score = 30.0 bits (66), Expect = 3.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPP 142
++ + L GPPGP G G PGP+ P
Sbjct: 479 QQARLALRGPPGPMGYTGRPGPLGQP 504
Score = 30.0 bits (66), Expect = 3.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 122 GLPGPPGPPGPQGPPGPIIPP 142
G G GPPG GPPG +I P
Sbjct: 1483 GEKGVQGPPGHPGPPGEVIQP 1503
Score = 29.6 bits (65), Expect = 4.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGP G PG +GPPG
Sbjct: 417 GNPGPVGDPGERGPPG 432
Score = 29.6 bits (65), Expect = 4.5
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 9/30 (30%)
Query: 122 GLPGPPGPPGPQGPP---------GPIIPP 142
G GP GPPGP G P GPI PP
Sbjct: 1003 GNEGPSGPPGPAGSPGERGAAGSGGPIGPP 1032
Score = 28.9 bits (63), Expect = 7.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 122 GLPGPPGPPGPQGPPG 137
G GPPGPPG G PG
Sbjct: 889 GPKGPPGPPGKDGLPG 904
Score = 28.5 bits (62), Expect = 10.0
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 122 GLPGPPGPPG---PQGPPGPIIPP 142
GLPG GP G P+GPPG PP
Sbjct: 601 GLPGESGPRGLLGPKGPPGIPGPP 624
Score = 28.5 bits (62), Expect = 10.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
Q + G G++ + G GLPGP G GP G GP
Sbjct: 642 QGEPGPPGQQGTPGTQ-----GLPGPQGAIGPHGEKGP 674
Score = 28.5 bits (62), Expect = 10.0
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
+ D+G G SRG+ GP GP G GP G PP + ++ +L + G
Sbjct: 753 KGDRGEVGVPGSRGE--------DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYP 804
Query: 161 ERAEPEPCTCGPAGPVAA 178
R P+ P P A+
Sbjct: 805 GRQGPKGSLGFPGFPGAS 822
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 45.4 bits (106), Expect = 8e-05
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPII 140
R G+NG K ++G + G PG PGPPGP GPPG +I
Sbjct: 910 RPGRPGLNGLKGTKGDPGVIMQGPPGLPGPPGPPGPPGAVI 950
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/93 (37%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG-K 115
PP + GE P+ P G E VD A L + +KG G S G K
Sbjct: 644 PPGSPGEDGPAGEPGPPG--------PEGQPGVD--GATGLPGMKGEKGARGPNGSVGEK 693
Query: 116 AKKLKFGLPGPP------GPPGPQGPPGPIIPP 142
GLPGPP GPPG GPPGP PP
Sbjct: 694 GDPGNRGLPGPPGKKGQAGPPGVMGPPGPPGPP 726
Score = 40.8 bits (94), Expect = 0.002
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
++G+ G +G+A G+ GPPGPPGP GPPGP
Sbjct: 698 NRGLPGPPGKKGQAGPP--GVMGPPGPPGPPGPPGP 731
Score = 40.8 bits (94), Expect = 0.002
Identities = 15/18 (83%), Positives = 15/18 (83%)
Query: 121 FGLPGPPGPPGPQGPPGP 138
FG PG PGPPGP GPPGP
Sbjct: 1089 FGRPGDPGPPGPPGPPGP 1106
Score = 38.1 bits (87), Expect = 0.013
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Query: 122 GLPGPPG-----PPGPQGPPGPIIPPEAL 145
GLPGPPG PGP GPPGP PP L
Sbjct: 1082 GLPGPPGFGRPGDPGPPGPPGPPGPPAIL 1110
Score = 34.7 bits (78), Expect = 0.14
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 29/85 (34%)
Query: 97 LFVRQSDKGVNGKKRSRGK----AKKLKFGLPGPP--------------------GPPGP 132
L ++ + G++G G K +FGLPG P GPPG
Sbjct: 877 LMGKKGEPGMHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGTKGDPGVIMQGPPGL 936
Query: 133 QGPPGPIIPPEALLKEFQLLLKGAV 157
GPPGP PP A++ +KGA+
Sbjct: 937 PGPPGPPGPPGAVIN-----IKGAI 956
Score = 33.5 bits (75), Expect = 0.31
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 17/100 (17%)
Query: 128 GPPGPQGPPGPI--IPPEALLKEFQ---LLLKGAVRQR-------ERAEPEPCTCGPAGP 175
G P P GPP P+ + PE + Q + +KG + E P GP GP
Sbjct: 527 GSPPPDGPPLPLPTVAPERWITPAQREHVGMKGQAGPKGEKGDAGEELPGPPEPSGPVGP 586
Query: 176 VAASLAPVS-----ATAGEDDDDVVGDVLALLAAPLAPGP 210
A + A S + G D+VG L P PGP
Sbjct: 587 TAGAEAEGSGLGWGSDVGSGSGDLVGSEQLLRGPPGPPGP 626
Score = 32.7 bits (73), Expect = 0.53
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 93 DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGP 135
+ W+ ++ G+ G+ +G+ LPGPP P GP GP
Sbjct: 544 ERWITPAQREHVGMKGQAGPKGEKGDAGEELPGPPEPSGPVGP 586
Score = 32.7 bits (73), Expect = 0.53
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPP--GPPGPQGPPGPI 139
G+ G+K RG K + G+ G GPPGP+GPPG I
Sbjct: 764 GLKGEKGDRGP--KGERGMDGASIVGPPGPRGPPGHI 798
Score = 32.7 bits (73), Expect = 0.53
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 115 KAKKLKFGLPGPPGPPGPQGPPGPIIPP--EALLKEFQLLLKG 155
K +K +GLPG G G QG GP PP A L+ F LKG
Sbjct: 986 KGEKGSWGLPGSKGEKGDQGAQGPPGPPLDLAYLRHFLNNLKG 1028
Score = 32.7 bits (73), Expect = 0.53
Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 98 FVRQSDKGVNGKKRSRGKAKKL--KFGLPGPPGPPGPQGPPG 137
F R D G G G L LPGPPGPPG G PG
Sbjct: 1089 FGRPGDPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPG 1130
Score = 31.6 bits (70), Expect = 1.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 116 AKKLKFGLPGPPGPPGPQGPPG 137
+++L G PGPPGPPG G PG
Sbjct: 613 SEQLLRGPPGPPGPPGLPGIPG 634
Score = 30.8 bits (68), Expect = 2.0
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 122 GLPGPPGPPGPQGPPG 137
GLPG PG PGP+GP G
Sbjct: 829 GLPGLPGFPGPRGPKG 844
Score = 29.6 bits (65), Expect = 4.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPG 131
+ +KG G K RG G PGP GPPG
Sbjct: 766 KGEKGDRGPKGERGMDGASIVGPPGPRGPPG 796
Score = 28.9 bits (63), Expect = 7.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 122 GLPGPPGPPGPQGPPGP 138
G PG PG GP G PGP
Sbjct: 643 GPPGSPGEDGPAGEPGP 659
Score = 28.5 bits (62), Expect = 10.0
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 27/93 (29%)
Query: 122 GLPGPPGPPGPQGPPG-PIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180
GLPG PGP GP+G G P P LKG Q E+ EP G +
Sbjct: 832 GLPGFPGPRGPKGDTGLPGFPG----------LKG--EQGEKGEP--------GAILTED 871
Query: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
P+ G+ + + AP GP+ P
Sbjct: 872 IPLERLMGKKGEP------GMHGAPGPMGPKGP 898
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 45.1 bits (105), Expect = 1e-04
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 100 RQSDKGVNGKKRSRGKA--KKLKFGLPGPPGPPGPQGPPGP 138
R G+NG K +G+ L FG+ G PGPPGP GPPGP
Sbjct: 1225 RPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGP 1265
Score = 42.7 bits (99), Expect = 5e-04
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 24/120 (20%)
Query: 101 QSDKGVNGKKRSRGKAKKLKF---GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV 157
+ D+G G+K RG+ F LPGPPGPPGP+G PG + G
Sbjct: 1327 KGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPG---------------IPGPK 1371
Query: 158 RQRERAEPEPCTCGPAGPVAASL----APVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
+ R +P P GP GP P G ++ P PGP P
Sbjct: 1372 GESIRGQPGP--PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1429
Score = 42.0 bits (97), Expect = 9e-04
Identities = 49/166 (29%), Positives = 58/166 (34%), Gaps = 36/166 (21%)
Query: 32 GRHLGSASPM-----SAKSRPRC-GPFPRSHPPRAGGEA-EPSEANRPAGLAVFQEPTAE 84
G LG A + A +PR P P + PP AGG + E S + A+
Sbjct: 667 GSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQ 726
Query: 85 RAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG-PIIP-P 142
D W VR G + G K K G PG PGPPG GPPG P +P P
Sbjct: 727 TLPGSDSVSTWDGSVRTP-----GGRVKEGGLKGQK-GEPGVPGPPGRAGPPGSPCLPGP 780
Query: 143 EALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAG 188
L PC P GP +L V G
Sbjct: 781 PGL---------------------PCPVSPLGPAGPALQTVPGPQG 805
Score = 42.0 bits (97), Expect = 9e-04
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 101 QSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIP 141
+ KG G +RG++ G GPPGPPGP GPPGP +P
Sbjct: 982 KGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 1023
Score = 38.9 bits (89), Expect = 0.007
Identities = 14/16 (87%), Positives = 15/16 (93%)
Query: 122 GLPGPPGPPGPQGPPG 137
GLPGPPGPPG +GPPG
Sbjct: 950 GLPGPPGPPGREGPPG 965
Score = 38.9 bits (89), Expect = 0.007
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGP 132
+ D+G G+K GK + GLPGPPGPPGP
Sbjct: 1095 KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 1126
Score = 38.5 bits (88), Expect = 0.010
Identities = 52/201 (25%), Positives = 70/201 (34%), Gaps = 37/201 (18%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
Q KG G + +G K G PG PGPP GPPGP++ + G+V
Sbjct: 1092 QGPKGDRGSRGEKGDPGKDGVGQPGLPGPP---GPPGPVV--------YVSEQDGSVLSV 1140
Query: 161 ERAEPEPCTC---GPAGPVA--ASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRV 215
E P GPAGP S + + + G + + L P + +
Sbjct: 1141 PGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKG 1200
Query: 216 EAAFLCRLRRDALVERRALHELGVYYLPDAEGAF----RRG-PGLNLTSGQYRAPVAGFY 270
E F G Y P +G R G PG+N G+ P G
Sbjct: 1201 EPGF--------------RGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEP--GDA 1244
Query: 271 ALAATLHVALGEPPRRGPPRP 291
+L + G P GPP P
Sbjct: 1245 SLGFGMRGMPGPPGPPGPPGP 1265
Score = 37.7 bits (86), Expect = 0.016
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 123 LPGPPGPPGPQGPPG 137
+PGPPGPPGP GPPG
Sbjct: 1420 VPGPPGPPGPPGPPG 1434
Score = 36.2 bits (82), Expect = 0.048
Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 27/108 (25%)
Query: 35 LGSASP-MSAKSRPRCGPFPRSH---PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90
LG A P + P+ P P P R G +P E +P T +
Sbjct: 790 LGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGD-------TGPQGFPGT 842
Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
P D G G K G ++ GPPGP GP GPPGP
Sbjct: 843 PGDV----------GPKGDKGDPGVGER------GPPGPQGPPGPPGP 874
Score = 35.4 bits (80), Expect = 0.082
Identities = 34/100 (34%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR-ERAEPEPCTCGPAGPVAAS- 179
G PG PG PGP GPPG PP ++ L GA + + P GPAG S
Sbjct: 944 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAP-----GPAGARGESG 998
Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAF 219
LA AG P PGP P + A F
Sbjct: 999 LAGAPGPAGPP------------GPPGPPGPPGPGLPAGF 1026
Score = 35.0 bits (79), Expect = 0.11
Identities = 13/15 (86%), Positives = 13/15 (86%)
Query: 124 PGPPGPPGPQGPPGP 138
PGPPG PG QGPPGP
Sbjct: 1282 PGPPGLPGNQGPPGP 1296
Score = 34.7 bits (78), Expect = 0.14
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 13/34 (38%)
Query: 122 GLPGPPGPP-------------GPQGPPGPIIPP 142
G PGPPGPP GP GPPGP PP
Sbjct: 1400 GPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1433
Score = 34.3 bits (77), Expect = 0.18
Identities = 34/114 (29%), Positives = 43/114 (37%), Gaps = 34/114 (29%)
Query: 122 GLPGPPGPPGPQGPPGPIIPP-------------EALLKEFQLLLKGAVRQRERAEPE-- 166
GLPG GPPGP+G G + PP EA +K + A ++ ER EP
Sbjct: 1286 GLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 1345
Query: 167 -------PCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
P GP GP P G + + G P PGP+ P
Sbjct: 1346 GFFGSSLPGPPGPPGPRGYPGIP-----GPKGESIRGQ-------PGPPGPQGP 1387
Score = 33.1 bits (74), Expect = 0.41
Identities = 73/268 (27%), Positives = 95/268 (35%), Gaps = 55/268 (20%)
Query: 36 GSASPMSAKSRPRCGPFPR-SHPPRAGGEAEPSEANRPAGLAVFQE---PTAERAHSVD- 90
G+ P A+ P + PP G P PAG + P A S D
Sbjct: 986 GAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADG 1045
Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQ 150
P+ L + D GV G ++G+ G+PG PG PG +G GP P
Sbjct: 1046 PQGPPGLPGLKGDPGVPGLPGAKGEVGA--DGVPGFPGLPGREGIAGPQGP--------- 1094
Query: 151 LLLKGAVRQR-ERAEP------EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLA 203
KG R E+ +P +P GP GP PV + +D G VL++
Sbjct: 1095 ---KGDRGSRGEKGDPGKDGVGQPGLPGPPGPP----GPVVYVSEQD-----GSVLSV-- 1140
Query: 204 APLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYR 263
PGP A F + L G P +G +G G
Sbjct: 1141 ----PGPEGRPGFAGF-----PGPAGPKGNLGSKGERGSPGPKG--EKG-----EPGSIF 1184
Query: 264 APVAGFYALAATLHVALGEPPRRGPPRP 291
+P G AL A GEP RGPP P
Sbjct: 1185 SPDGG--ALGPAQKGAKGEPGFRGPPGP 1210
Score = 32.3 bits (72), Expect = 0.69
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGPPGPPG G PG
Sbjct: 903 GFPGPPGPPGVPGLPG 918
Score = 32.0 bits (71), Expect = 0.90
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGPPGPPGP G G
Sbjct: 1422 GPPGPPGPPGPPGTMG 1437
Score = 29.3 bits (64), Expect = 5.8
Identities = 32/100 (32%), Positives = 35/100 (35%), Gaps = 14/100 (14%)
Query: 122 GLPGPPGPPGPQGPPG-------PIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAG 174
G G PG PG G PG P P + K KG ER P P GP G
Sbjct: 817 GRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGD----KGDPGVGERGPPGP--QGPPG 870
Query: 175 PVAASLAPVSATAGEDDDDVVGDVLALLAAPLA-PGPRAP 213
P S T + + G L L P PGP P
Sbjct: 871 PPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGP 910
Score = 28.9 bits (63), Expect = 7.6
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 123 LPGPPGPPGPQGPPG-PIIPPE 143
L GP G PGP GPPG P +P E
Sbjct: 898 LRGPRGFPGPPGPPGVPGLPGE 919
Score = 28.5 bits (62), Expect = 10.0
Identities = 29/109 (26%), Positives = 35/109 (32%), Gaps = 35/109 (32%)
Query: 102 SDKGVNGKKRSRGK-------AKKLKFGLPGPP-------------------------GP 129
+ KG G+ RG K + G PG P G
Sbjct: 1194 AQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGM 1253
Query: 130 PGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAA 178
PGP GPPGP PP + + + A R P GP GP A
Sbjct: 1254 PGPPGPPGPPGPPGTPVYDSNVF---AESSRPGPPGLPGNQGPPGPKGA 1299
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 45.1 bits (105), Expect = 1e-04
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 100 RQSDKGVNGKKRSRGKA--KKLKFGLPGPPGPPGPQGPPGP 138
R G+NG K +G+ L FG+ G PGPPGP GPPGP
Sbjct: 810 RPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGP 850
Score = 42.7 bits (99), Expect = 5e-04
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 24/120 (20%)
Query: 101 QSDKGVNGKKRSRGKAKKLKF---GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV 157
+ D+G G+K RG+ F LPGPPGPPGP+G PG + G
Sbjct: 912 KGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPG---------------IPGPK 956
Query: 158 RQRERAEPEPCTCGPAGPVAASL----APVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
+ R +P P GP GP P G ++ P PGP P
Sbjct: 957 GESIRGQPGP--PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1014
Score = 42.0 bits (97), Expect = 9e-04
Identities = 49/166 (29%), Positives = 58/166 (34%), Gaps = 36/166 (21%)
Query: 32 GRHLGSASPM-----SAKSRPRC-GPFPRSHPPRAGGEA-EPSEANRPAGLAVFQEPTAE 84
G LG A + A +PR P P + PP AGG + E S + A+
Sbjct: 252 GSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQ 311
Query: 85 RAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG-PIIP-P 142
D W VR G + G K K G PG PGPPG GPPG P +P P
Sbjct: 312 TLPGSDSVSTWDGSVRTP-----GGRVKEGGLKGQK-GEPGVPGPPGRAGPPGSPCLPGP 365
Query: 143 EALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAG 188
L PC P GP +L V G
Sbjct: 366 PGL---------------------PCPVSPLGPAGPALQTVPGPQG 390
Score = 42.0 bits (97), Expect = 9e-04
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 101 QSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIP 141
+ KG G +RG++ G GPPGPPGP GPPGP +P
Sbjct: 567 KGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 608
Score = 38.9 bits (89), Expect = 0.007
Identities = 14/16 (87%), Positives = 15/16 (93%)
Query: 122 GLPGPPGPPGPQGPPG 137
GLPGPPGPPG +GPPG
Sbjct: 535 GLPGPPGPPGREGPPG 550
Score = 38.9 bits (89), Expect = 0.007
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGP 132
+ D+G G+K GK + GLPGPPGPPGP
Sbjct: 680 KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 711
Score = 38.5 bits (88), Expect = 0.010
Identities = 52/201 (25%), Positives = 70/201 (34%), Gaps = 37/201 (18%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
Q KG G + +G K G PG PGPP GPPGP++ + G+V
Sbjct: 677 QGPKGDRGSRGEKGDPGKDGVGQPGLPGPP---GPPGPVV--------YVSEQDGSVLSV 725
Query: 161 ERAEPEPCTC---GPAGPVA--ASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRV 215
E P GPAGP S + + + G + + L P + +
Sbjct: 726 PGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKG 785
Query: 216 EAAFLCRLRRDALVERRALHELGVYYLPDAEGAF----RRG-PGLNLTSGQYRAPVAGFY 270
E F G Y P +G R G PG+N G+ P G
Sbjct: 786 EPGF--------------RGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEP--GDA 829
Query: 271 ALAATLHVALGEPPRRGPPRP 291
+L + G P GPP P
Sbjct: 830 SLGFGMRGMPGPPGPPGPPGP 850
Score = 37.7 bits (86), Expect = 0.016
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 123 LPGPPGPPGPQGPPG 137
+PGPPGPPGP GPPG
Sbjct: 1005 VPGPPGPPGPPGPPG 1019
Score = 36.2 bits (82), Expect = 0.048
Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 27/108 (25%)
Query: 35 LGSASP-MSAKSRPRCGPFPRSH---PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90
LG A P + P+ P P P R G +P E +P T +
Sbjct: 375 LGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGD-------TGPQGFPGT 427
Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
P D G G K G ++ GPPGP GP GPPGP
Sbjct: 428 PGDV----------GPKGDKGDPGVGER------GPPGPQGPPGPPGP 459
Score = 35.4 bits (80), Expect = 0.082
Identities = 34/100 (34%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR-ERAEPEPCTCGPAGPVAAS- 179
G PG PG PGP GPPG PP ++ L GA + + P GPAG S
Sbjct: 529 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAP-----GPAGARGESG 583
Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAF 219
LA AG P PGP P + A F
Sbjct: 584 LAGAPGPAGPP------------GPPGPPGPPGPGLPAGF 611
Score = 35.0 bits (79), Expect = 0.11
Identities = 13/15 (86%), Positives = 13/15 (86%)
Query: 124 PGPPGPPGPQGPPGP 138
PGPPG PG QGPPGP
Sbjct: 867 PGPPGLPGNQGPPGP 881
Score = 34.7 bits (78), Expect = 0.14
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 13/34 (38%)
Query: 122 GLPGPPGPP-------------GPQGPPGPIIPP 142
G PGPPGPP GP GPPGP PP
Sbjct: 985 GPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1018
Score = 34.3 bits (77), Expect = 0.18
Identities = 34/114 (29%), Positives = 43/114 (37%), Gaps = 34/114 (29%)
Query: 122 GLPGPPGPPGPQGPPGPIIPP-------------EALLKEFQLLLKGAVRQRERAEPE-- 166
GLPG GPPGP+G G + PP EA +K + A ++ ER EP
Sbjct: 871 GLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 930
Query: 167 -------PCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
P GP GP P G + + G P PGP+ P
Sbjct: 931 GFFGSSLPGPPGPPGPRGYPGIP-----GPKGESIRGQ-------PGPPGPQGP 972
Score = 33.1 bits (74), Expect = 0.41
Identities = 73/268 (27%), Positives = 95/268 (35%), Gaps = 55/268 (20%)
Query: 36 GSASPMSAKSRPRCGPFPR-SHPPRAGGEAEPSEANRPAGLAVFQE---PTAERAHSVD- 90
G+ P A+ P + PP G P PAG + P A S D
Sbjct: 571 GAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADG 630
Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQ 150
P+ L + D GV G ++G+ G+PG PG PG +G GP P
Sbjct: 631 PQGPPGLPGLKGDPGVPGLPGAKGEVGA--DGVPGFPGLPGREGIAGPQGP--------- 679
Query: 151 LLLKGAVRQR-ERAEP------EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLA 203
KG R E+ +P +P GP GP PV + +D G VL++
Sbjct: 680 ---KGDRGSRGEKGDPGKDGVGQPGLPGPPGPP----GPVVYVSEQD-----GSVLSV-- 725
Query: 204 APLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYR 263
PGP A F + L G P +G +G G
Sbjct: 726 ----PGPEGRPGFAGF-----PGPAGPKGNLGSKGERGSPGPKG--EKG-----EPGSIF 769
Query: 264 APVAGFYALAATLHVALGEPPRRGPPRP 291
+P G AL A GEP RGPP P
Sbjct: 770 SPDGG--ALGPAQKGAKGEPGFRGPPGP 795
Score = 32.3 bits (72), Expect = 0.69
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGPPGPPG G PG
Sbjct: 488 GFPGPPGPPGVPGLPG 503
Score = 32.0 bits (71), Expect = 0.90
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGPPGPPGP G G
Sbjct: 1007 GPPGPPGPPGPPGTMG 1022
Score = 29.3 bits (64), Expect = 5.8
Identities = 32/100 (32%), Positives = 35/100 (35%), Gaps = 14/100 (14%)
Query: 122 GLPGPPGPPGPQGPPG-------PIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAG 174
G G PG PG G PG P P + K KG ER P P GP G
Sbjct: 402 GRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGD----KGDPGVGERGPPGP--QGPPG 455
Query: 175 PVAASLAPVSATAGEDDDDVVGDVLALLAAPLA-PGPRAP 213
P S T + + G L L P PGP P
Sbjct: 456 PPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGP 495
Score = 28.9 bits (63), Expect = 7.6
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 123 LPGPPGPPGPQGPPG-PIIPPE 143
L GP G PGP GPPG P +P E
Sbjct: 483 LRGPRGFPGPPGPPGVPGLPGE 504
Score = 28.5 bits (62), Expect = 10.0
Identities = 29/109 (26%), Positives = 35/109 (32%), Gaps = 35/109 (32%)
Query: 102 SDKGVNGKKRSRGK-------AKKLKFGLPGPP-------------------------GP 129
+ KG G+ RG K + G PG P G
Sbjct: 779 AQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGM 838
Query: 130 PGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAA 178
PGP GPPGP PP + + + A R P GP GP A
Sbjct: 839 PGPPGPPGPPGPPGTPVYDSNVF---AESSRPGPPGLPGNQGPPGPKGA 884
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 45.1 bits (105), Expect = 1e-04
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 100 RQSDKGVNGKKRSRGKA--KKLKFGLPGPPGPPGPQGPPGP 138
R G+NG K +G+ L FG+ G PGPPGP GPPGP
Sbjct: 990 RPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGP 1030
Score = 42.7 bits (99), Expect = 5e-04
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 24/120 (20%)
Query: 101 QSDKGVNGKKRSRGKAKKLKF---GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV 157
+ D+G G+K RG+ F LPGPPGPPGP+G PG + G
Sbjct: 1092 KGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPG---------------IPGPK 1136
Query: 158 RQRERAEPEPCTCGPAGPVAASL----APVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
+ R +P P GP GP P G ++ P PGP P
Sbjct: 1137 GESIRGQPGP--PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1194
Score = 42.0 bits (97), Expect = 9e-04
Identities = 49/166 (29%), Positives = 58/166 (34%), Gaps = 36/166 (21%)
Query: 32 GRHLGSASPM-----SAKSRPRC-GPFPRSHPPRAGGEA-EPSEANRPAGLAVFQEPTAE 84
G LG A + A +PR P P + PP AGG + E S + A+
Sbjct: 432 GSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQ 491
Query: 85 RAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG-PIIP-P 142
D W VR G + G K K G PG PGPPG GPPG P +P P
Sbjct: 492 TLPGSDSVSTWDGSVRTP-----GGRVKEGGLKGQK-GEPGVPGPPGRAGPPGSPCLPGP 545
Query: 143 EALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAG 188
L PC P GP +L V G
Sbjct: 546 PGL---------------------PCPVSPLGPAGPALQTVPGPQG 570
Score = 42.0 bits (97), Expect = 9e-04
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 101 QSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIP 141
+ KG G +RG++ G GPPGPPGP GPPGP +P
Sbjct: 747 KGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 788
Score = 38.9 bits (89), Expect = 0.007
Identities = 14/16 (87%), Positives = 15/16 (93%)
Query: 122 GLPGPPGPPGPQGPPG 137
GLPGPPGPPG +GPPG
Sbjct: 715 GLPGPPGPPGREGPPG 730
Score = 38.9 bits (89), Expect = 0.007
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGP 132
+ D+G G+K GK + GLPGPPGPPGP
Sbjct: 860 KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 891
Score = 38.5 bits (88), Expect = 0.010
Identities = 52/201 (25%), Positives = 70/201 (34%), Gaps = 37/201 (18%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
Q KG G + +G K G PG PGPP GPPGP++ + G+V
Sbjct: 857 QGPKGDRGSRGEKGDPGKDGVGQPGLPGPP---GPPGPVV--------YVSEQDGSVLSV 905
Query: 161 ERAEPEPCTC---GPAGPVA--ASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRV 215
E P GPAGP S + + + G + + L P + +
Sbjct: 906 PGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKG 965
Query: 216 EAAFLCRLRRDALVERRALHELGVYYLPDAEGAF----RRG-PGLNLTSGQYRAPVAGFY 270
E F G Y P +G R G PG+N G+ P G
Sbjct: 966 EPGF--------------RGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEP--GDA 1009
Query: 271 ALAATLHVALGEPPRRGPPRP 291
+L + G P GPP P
Sbjct: 1010 SLGFGMRGMPGPPGPPGPPGP 1030
Score = 37.7 bits (86), Expect = 0.016
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 123 LPGPPGPPGPQGPPG 137
+PGPPGPPGP GPPG
Sbjct: 1185 VPGPPGPPGPPGPPG 1199
Score = 36.2 bits (82), Expect = 0.048
Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 27/108 (25%)
Query: 35 LGSASP-MSAKSRPRCGPFPRSH---PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90
LG A P + P+ P P P R G +P E +P T +
Sbjct: 555 LGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGD-------TGPQGFPGT 607
Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
P D G G K G ++ GPPGP GP GPPGP
Sbjct: 608 PGDV----------GPKGDKGDPGVGER------GPPGPQGPPGPPGP 639
Score = 35.4 bits (80), Expect = 0.082
Identities = 34/100 (34%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR-ERAEPEPCTCGPAGPVAAS- 179
G PG PG PGP GPPG PP ++ L GA + + P GPAG S
Sbjct: 709 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAP-----GPAGARGESG 763
Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAF 219
LA AG P PGP P + A F
Sbjct: 764 LAGAPGPAGPP------------GPPGPPGPPGPGLPAGF 791
Score = 35.0 bits (79), Expect = 0.11
Identities = 13/15 (86%), Positives = 13/15 (86%)
Query: 124 PGPPGPPGPQGPPGP 138
PGPPG PG QGPPGP
Sbjct: 1047 PGPPGLPGNQGPPGP 1061
Score = 34.7 bits (78), Expect = 0.14
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 13/34 (38%)
Query: 122 GLPGPPGPP-------------GPQGPPGPIIPP 142
G PGPPGPP GP GPPGP PP
Sbjct: 1165 GPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1198
Score = 34.3 bits (77), Expect = 0.18
Identities = 34/114 (29%), Positives = 43/114 (37%), Gaps = 34/114 (29%)
Query: 122 GLPGPPGPPGPQGPPGPIIPP-------------EALLKEFQLLLKGAVRQRERAEPE-- 166
GLPG GPPGP+G G + PP EA +K + A ++ ER EP
Sbjct: 1051 GLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 1110
Query: 167 -------PCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
P GP GP P G + + G P PGP+ P
Sbjct: 1111 GFFGSSLPGPPGPPGPRGYPGIP-----GPKGESIRGQ-------PGPPGPQGP 1152
Score = 33.1 bits (74), Expect = 0.41
Identities = 73/268 (27%), Positives = 95/268 (35%), Gaps = 55/268 (20%)
Query: 36 GSASPMSAKSRPRCGPFPR-SHPPRAGGEAEPSEANRPAGLAVFQE---PTAERAHSVD- 90
G+ P A+ P + PP G P PAG + P A S D
Sbjct: 751 GAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADG 810
Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQ 150
P+ L + D GV G ++G+ G+PG PG PG +G GP P
Sbjct: 811 PQGPPGLPGLKGDPGVPGLPGAKGEVGA--DGVPGFPGLPGREGIAGPQGP--------- 859
Query: 151 LLLKGAVRQR-ERAEP------EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLA 203
KG R E+ +P +P GP GP PV + +D G VL++
Sbjct: 860 ---KGDRGSRGEKGDPGKDGVGQPGLPGPPGPP----GPVVYVSEQD-----GSVLSV-- 905
Query: 204 APLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYR 263
PGP A F + L G P +G +G G
Sbjct: 906 ----PGPEGRPGFAGF-----PGPAGPKGNLGSKGERGSPGPKG--EKG-----EPGSIF 949
Query: 264 APVAGFYALAATLHVALGEPPRRGPPRP 291
+P G AL A GEP RGPP P
Sbjct: 950 SPDGG--ALGPAQKGAKGEPGFRGPPGP 975
Score = 32.3 bits (72), Expect = 0.69
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGPPGPPG G PG
Sbjct: 668 GFPGPPGPPGVPGLPG 683
Score = 32.0 bits (71), Expect = 0.90
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGPPGPPGP G G
Sbjct: 1187 GPPGPPGPPGPPGTMG 1202
Score = 29.3 bits (64), Expect = 5.8
Identities = 32/100 (32%), Positives = 35/100 (35%), Gaps = 14/100 (14%)
Query: 122 GLPGPPGPPGPQGPPG-------PIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAG 174
G G PG PG G PG P P + K KG ER P P GP G
Sbjct: 582 GRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGD----KGDPGVGERGPPGP--QGPPG 635
Query: 175 PVAASLAPVSATAGEDDDDVVGDVLALLAAPLA-PGPRAP 213
P S T + + G L L P PGP P
Sbjct: 636 PPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGP 675
Score = 28.9 bits (63), Expect = 7.6
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 123 LPGPPGPPGPQGPPG-PIIPPE 143
L GP G PGP GPPG P +P E
Sbjct: 663 LRGPRGFPGPPGPPGVPGLPGE 684
Score = 28.5 bits (62), Expect = 10.0
Identities = 29/109 (26%), Positives = 35/109 (32%), Gaps = 35/109 (32%)
Query: 102 SDKGVNGKKRSRGK-------AKKLKFGLPGPP-------------------------GP 129
+ KG G+ RG K + G PG P G
Sbjct: 959 AQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGM 1018
Query: 130 PGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAA 178
PGP GPPGP PP + + + A R P GP GP A
Sbjct: 1019 PGPPGPPGPPGPPGTPVYDSNVF---AESSRPGPPGLPGNQGPPGPKGA 1064
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 45.1 bits (105), Expect = 1e-04
Identities = 32/91 (35%), Positives = 34/91 (37%), Gaps = 23/91 (25%)
Query: 51 PFPRSHPPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
P P P AG EP RP G Q P ER G+ G
Sbjct: 1780 PGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGER-------------------GLPG 1820
Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQ--GPPG 137
+K RG GLPGPPGP G GPPG
Sbjct: 1821 EKGERGTGSSGPRGLPGPPGPQGESRTGPPG 1851
Score = 38.5 bits (88), Expect = 0.010
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPE 143
+ ++G++G G + G PGP GPPGPQGP G IP E
Sbjct: 1600 RGERGISGAIGPPGPRGDI--GPPGPQGPPGPQGPNGLSIPGE 1640
Score = 37.7 bits (86), Expect = 0.016
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
RQ KG G+ G+ G PG PGPPGP GPPG
Sbjct: 1643 RQGMKGDAGEPGLPGRT-----GTPGLPGPPGPMGPPG 1675
Score = 36.2 bits (82), Expect = 0.048
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
G G++ +G A + GLPG G PG GPPGP+ PP
Sbjct: 1639 GEQGRQGMKGDAGEP--GLPGRTGTPGLPGPPGPMGPP 1674
Score = 32.3 bits (72), Expect = 0.69
Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 125 GPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV----RQRERAEPEP-CTCGPAGPVAAS 179
GPPGPPGP G PG P + + GA+ + + P P GP GP S
Sbjct: 1583 GPPGPPGPAGGPGAKGP------RGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLS 1636
Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
+ G D + P PGP P
Sbjct: 1637 IPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGP 1670
Score = 32.0 bits (71), Expect = 0.90
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
D+G GK + G G PGPPG PG G GP
Sbjct: 1676 DRGFTGKDGAMGPR-----GPPGPPGSPGSPGVTGP 1706
Score = 31.2 bits (69), Expect = 1.5
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 124 PGPPGPPGPQGPPG 137
PGPPGPPGP G G
Sbjct: 1777 PGPPGPPGPPGSAG 1790
Score = 30.4 bits (67), Expect = 2.6
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 3/20 (15%)
Query: 122 GLPGPPGPP---GPQGPPGP 138
G PGPPGPP G +G PGP
Sbjct: 1778 GPPGPPGPPGSAGARGEPGP 1797
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 45.1 bits (105), Expect = 1e-04
Identities = 32/91 (35%), Positives = 34/91 (37%), Gaps = 23/91 (25%)
Query: 51 PFPRSHPPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
P P P AG EP RP G Q P ER G+ G
Sbjct: 2944 PGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGER-------------------GLPG 2984
Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQ--GPPG 137
+K RG GLPGPPGP G GPPG
Sbjct: 2985 EKGERGTGSSGPRGLPGPPGPQGESRTGPPG 3015
Score = 38.5 bits (88), Expect = 0.010
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPE 143
+ ++G++G G + G PGP GPPGPQGP G IP E
Sbjct: 2764 RGERGISGAIGPPGPRGDI--GPPGPQGPPGPQGPNGLSIPGE 2804
Score = 37.7 bits (86), Expect = 0.016
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
RQ KG G+ G+ G PG PGPPGP GPPG
Sbjct: 2807 RQGMKGDAGEPGLPGRT-----GTPGLPGPPGPMGPPG 2839
Score = 36.2 bits (82), Expect = 0.048
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
G G++ +G A + GLPG G PG GPPGP+ PP
Sbjct: 2803 GEQGRQGMKGDAGEP--GLPGRTGTPGLPGPPGPMGPP 2838
Score = 32.3 bits (72), Expect = 0.69
Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 125 GPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV----RQRERAEPEP-CTCGPAGPVAAS 179
GPPGPPGP G PG P + + GA+ + + P P GP GP S
Sbjct: 2747 GPPGPPGPAGGPGAKGP------RGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLS 2800
Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
+ G D + P PGP P
Sbjct: 2801 IPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGP 2834
Score = 32.0 bits (71), Expect = 0.90
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
D+G GK + G G PGPPG PG G GP
Sbjct: 2840 DRGFTGKDGAMGPR-----GPPGPPGSPGSPGVTGP 2870
Score = 31.2 bits (69), Expect = 1.5
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 124 PGPPGPPGPQGPPG 137
PGPPGPPGP G G
Sbjct: 2941 PGPPGPPGPPGSAG 2954
Score = 30.4 bits (67), Expect = 2.6
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 3/20 (15%)
Query: 122 GLPGPPGPP---GPQGPPGP 138
G PGPPGPP G +G PGP
Sbjct: 2942 GPPGPPGPPGSAGARGEPGP 2961
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 44.7 bits (104), Expect = 1e-04
Identities = 38/122 (31%), Positives = 45/122 (36%), Gaps = 31/122 (25%)
Query: 34 HLGSASPMSAKSRPRC-GPF-PRSHPPRAGGEAEPSEANRP--AGLAVFQEPTAERAHSV 89
H G A P A P GP P P G + +P P AG+A
Sbjct: 435 HNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIAT------------ 482
Query: 90 DPRDAWMLFVRQSDKGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKE 148
KG+NG G + G PG PGPPGP GPPG + PE +K
Sbjct: 483 --------------KGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPPGQAVMPEGFIKA 528
Query: 149 FQ 150
Q
Sbjct: 529 GQ 530
Score = 44.3 bits (103), Expect = 2e-04
Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 11/103 (10%)
Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTC 170
+S+G A + + G PGPPGP GP+G PGP PP + EP
Sbjct: 49 KSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGK-----------PGYGSPGLQGEPGLP 97
Query: 171 GPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
GP GP A V G+ + + PGPR P
Sbjct: 98 GPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGP 140
Score = 40.4 bits (93), Expect = 0.003
Identities = 34/92 (36%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 47 PRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGV 106
PR P P S PP G P P GL P+A V + ++G
Sbjct: 70 PRGHPGP-SGPPGKPGYGSPGLQGEP-GLPGPPGPSAVGKPGVPGLPG-----KPGERGP 122
Query: 107 NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
G K G A GLPGP GPPGP G PGP
Sbjct: 123 YGPKGDVGPA-----GLPGPRGPPGPPGIPGP 149
Score = 40.0 bits (92), Expect = 0.003
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD-PRDAWMLFVRQSDKGVNGKKRSRGKA 116
P G P PAG++V +P + PR +KG G G+
Sbjct: 135 PGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGF------PGEKGAPGVPGMNGQK 188
Query: 117 KKLKFGLPGPPGP---PGPQGPPGPIIPP 142
++ +G PG PG PGPQGP GP PP
Sbjct: 189 GEMGYGAPGRPGERGLPGPQGPTGPSGPP 217
Score = 38.5 bits (88), Expect = 0.010
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 105 GVNGKKRSRG---KAKKLKFGLPGPPGPPGPQGPPG 137
G+NG+K G + + GLPGP GP GP GPPG
Sbjct: 183 GMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPG 218
Score = 35.4 bits (80), Expect = 0.082
Identities = 42/138 (30%), Positives = 46/138 (33%), Gaps = 37/138 (26%)
Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
GP P + G P PAG A + ER G +GK
Sbjct: 344 GPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERG----------------SPGSDGK 387
Query: 110 KRSRGK----AKKLKFGLPGPPGPP---GPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162
GK K GLPGP G P GP G PGP+ P A KG
Sbjct: 388 PGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGA---------KGMPGHNGE 438
Query: 163 AEPE-----PCTCGPAGP 175
A P P T GP GP
Sbjct: 439 AGPRGAPGIPGTRGPIGP 456
Score = 34.7 bits (78), Expect = 0.14
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPG---PPGPPGPQGPPG 137
++ + GV G+ +G G PG P GPPGPQGPPG
Sbjct: 221 KRGENGVPGQPGIKGDR-----GFPGEMGPIGPPGPQGPPG 256
Score = 31.6 bits (70), Expect = 1.2
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
Q + G+ G K GLPG PG GP GP G + P
Sbjct: 91 QGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGP 131
Score = 31.6 bits (70), Expect = 1.2
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
G+ G K RG A GLPG PG G QGP G
Sbjct: 302 GLPGLKGERGPA-----GLPGGPGAKGEQGPAG 329
Score = 31.2 bits (69), Expect = 1.5
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
G G G K +G PG G PG GPPGP
Sbjct: 69 GPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGP 102
Score = 31.2 bits (69), Expect = 1.5
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
GLPG PG GP GPPG
Sbjct: 282 GLPGAPGIAGPPGPPG 297
Score = 30.8 bits (68), Expect = 2.0
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 120 KFGLPGPPGPPGPQGPPG 137
K GL GPPG GPQGP G
Sbjct: 333 KPGLTGPPGNMGPQGPKG 350
Score = 30.4 bits (67), Expect = 2.6
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPG---PPGPQGPPGP 138
G G K +G A GLPG PG PPG GP GP
Sbjct: 317 GGPGAKGEQGPA-----GLPGKPGLTGPPGNMGPQGP 348
Score = 29.6 bits (65), Expect = 4.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
+G G++ G K G PG PG PG +G PG
Sbjct: 252 QGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPG 285
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 44.3 bits (103), Expect = 2e-04
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110
P PR P G P P G A P+ P+ A +DK +
Sbjct: 238 PGPRGLPGEMGRPGPPG----PPGPAGNPGPSPN-----SPQGALYSLQPPTDKDNGDSR 288
Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
+ + G+PGP GPPGP GPPGP PP
Sbjct: 289 LASAIVDTVLAGVPGPRGPPGPPGPPGPRGPP 320
Score = 43.5 bits (101), Expect = 3e-04
Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKA 116
PP G PS N P G +P ++ + D R A + V GV G +
Sbjct: 255 PPGPAGNPGPSP-NSPQGALYSLQPPTDKDNG-DSRLASAI-VDTVLAGVPGPR------ 305
Query: 117 KKLKFGLPGPPGPPGPQGPPGP 138
G PGPPGPPGP+GPPGP
Sbjct: 306 -----GPPGPPGPPGPRGPPGP 322
Score = 36.6 bits (83), Expect = 0.037
Identities = 34/116 (29%), Positives = 41/116 (35%), Gaps = 16/116 (13%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164
G G K RG+ G GP GPPG GPPGP P + + G
Sbjct: 212 GPPGSKGDRGQT-----GEKGPAGPPGLLGPPGPRGLPGEMGRPGPPGPPGPA-----GN 261
Query: 165 PEPCTCGPAGPVAASLAPVSATAGEDD------DDVVGDVLALLAAPLAPGPRAPR 214
P P P G + + P G+ D V+ V P PGP PR
Sbjct: 262 PGPSPNSPQGALYSLQPPTDKDNGDSRLASAIVDTVLAGVPGPRGPPGPPGPPGPR 317
Score = 36.2 bits (82), Expect = 0.048
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 125 GPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGP 175
GP GPPG GPPGP PP + +G ++ A P P GP GP
Sbjct: 197 GPAGPPGQTGPPGPAGPPGSKGD------RGQTGEKGPAGP-PGLLGPPGP 240
Score = 28.9 bits (63), Expect = 7.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 122 GLPGPPGPPGPQGPPGP 138
G GPPG GP GP GP
Sbjct: 197 GPAGPPGQTGPPGPAGP 213
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 43.9 bits (102), Expect = 2e-04
Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 27/144 (18%)
Query: 101 QSDKGVNGKKRSRGKAKKLKF----GLPGPPGPPG------------PQGPPGPIIP--- 141
+ DKG +G + RG+ F GLPGPPGP G P+GPPGP+ P
Sbjct: 1127 RGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGK 1186
Query: 142 ---PEALLKEFQLLLKGAVRQRERAEP--EPCTCGPAGP---VAASLAPVSATAGEDDDD 193
P L ++G+V + P EP GP GP + A+L + E D
Sbjct: 1187 EGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDESMPD 1246
Query: 194 VVGDVLALLAAPLAPGPRAPRVEA 217
+ + AAP P V A
Sbjct: 1247 PLPEFTEDQAAPDDKNKTDPGVHA 1270
Score = 38.5 bits (88), Expect = 0.010
Identities = 72/248 (29%), Positives = 86/248 (34%), Gaps = 48/248 (19%)
Query: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110
P P AG P A P EP E + + D G +G+
Sbjct: 905 PGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGL-----------RGDPGSHGRV 953
Query: 111 RSRGKAKKL----KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR-ERAEP 165
RG A G PG G PGP GPPGP Q + G QR ER P
Sbjct: 954 GDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTG------QRGIVGMPGQRGERGMP 1007
Query: 166 EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLA-PGPRAPRVEAAFLCRLR 224
GPAG + P AT + VG + P+ PGP P R
Sbjct: 1008 G--LPGPAG-TPGKVGPTGATGDKGPPGPVGPPGS--NGPVGEPGPEGPAGNDG--TPGR 1060
Query: 225 RDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYRAP-VAGFYALAATLHVALGEP 283
A+ ER + G LP ++GA PG T G AP AG G+P
Sbjct: 1061 DGAVGERGDRGDPGPAGLPGSQGA----PG---TPGPVGAPGDAG----------QRGDP 1103
Query: 284 PRRGPPRP 291
RGP P
Sbjct: 1104 GSRGPIGP 1111
Score = 37.4 bits (85), Expect = 0.021
Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 15/108 (13%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
G PM P FP + P GEA P+ A P G P +R + P
Sbjct: 363 GKPGPMGPLGIPGSSGFPGN--PGMKGEAGPTGARGPEG------PQGQRGETGPPGPVG 414
Query: 96 M-----LFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
G G S G + G GPPG PGPQG GP
Sbjct: 415 SPGLPGAIGTDGTPGAKGPTGSPGTSGPP--GSAGPPGSPGPQGSTGP 460
Score = 37.4 bits (85), Expect = 0.021
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 101 QSDKGVNGKKRSRGKA-KKLKFGLPGPPGPPGPQGPPG 137
+ D+G G+K + G A GLPGP GPPGP GP G
Sbjct: 776 KGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTG 813
Score = 36.6 bits (83), Expect = 0.037
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPG 137
G+ G++ +G F GLPGPPGPPG G PG
Sbjct: 660 GLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPG 693
Score = 35.8 bits (81), Expect = 0.062
Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 122 GLPGPPGPPGPQGPPGPIIP--------PEALLKEFQLLLKGAVRQRERAEPEPCTCGPA 173
G PGP GPPG QGP G P P+ + E V + A P
Sbjct: 129 GRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGE------PGVPGQPGAPGPPGHPSHP 182
Query: 174 GPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAP-GPRAPR 214
GP S + AG D+ +G + L+ + P GPR P+
Sbjct: 183 GPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQ 224
Score = 35.8 bits (81), Expect = 0.062
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181
G GP G PGP G GPI PP + +P T GP GPV A
Sbjct: 477 GEAGPKGEPGPHGIQGPIGPP-------------GEEGKRGPRGDPGTVGPPGPVGERGA 523
Query: 182 P 182
P
Sbjct: 524 P 524
Score = 35.4 bits (80), Expect = 0.082
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110
P P G P E +P V +P A + PR + + G+ G
Sbjct: 671 PGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGA--VGPLGPRGERGNPGERGEPGITGLP 728
Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
+G A G GP G PGP G PG PP
Sbjct: 729 GEKGMAGG--HGPDGPKGSPGPSGTPGDTGPP 758
Score = 35.0 bits (79), Expect = 0.11
Identities = 46/165 (27%), Positives = 54/165 (32%), Gaps = 35/165 (21%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVF---QEPTAERAHSVDPR 92
G A P K P GP PP + G N P G F Q P + +P
Sbjct: 807 GPAGPTGEKGEP--GPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPG 864
Query: 93 DAWMLFVRQSDKGVNGKKRSRGK----------AKKLKFGLPGPP------------GPP 130
+ ++ D G G + G K G GPP GPP
Sbjct: 865 EPG----QKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPP 920
Query: 131 GPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGP 175
GP G PGP P KE L+G R GPAGP
Sbjct: 921 GPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDR----GPAGP 961
Score = 33.9 bits (76), Expect = 0.24
Identities = 44/156 (28%), Positives = 55/156 (35%), Gaps = 30/156 (19%)
Query: 36 GSASPMSAKSRPR----CGPF----PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAH 87
G A P P GP P P + G + EP P + P A R
Sbjct: 231 GGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGA-RGF 289
Query: 88 SVDPRDAWMLFVRQSDKGVNGKKRSRG----KAKKLKFGLPGPP---GPPGPQGPPGPII 140
P G+ G K RG + K + G PG GP GP G GP+
Sbjct: 290 PGAP-------------GLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLG 336
Query: 141 PPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPV 176
P + +L +GA QR A P GP GP+
Sbjct: 337 PRGMPGERGRLGPQGAPGQR-GAHGMPGKPGPMGPL 371
Score = 33.1 bits (74), Expect = 0.41
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGP 175
G GPPGP G QG PGP PP +G + +P GP GP
Sbjct: 666 GEQGPPGPTGFQGLPGPPGPPG----------EGGKPGDQGVPGDPGAVGPLGP 709
Score = 32.0 bits (71), Expect = 0.90
Identities = 37/120 (30%), Positives = 43/120 (35%), Gaps = 34/120 (28%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQG---PPGPIIPPEALLKEFQLLLKGAVRQR 160
KG +G G+A G+PG G PG G P GP+ PP A +
Sbjct: 620 KGSSGDPGKPGEAGNA--GVPGQRGAPGKDGEVGPSGPVGPPGL-----------AGERG 666
Query: 161 ERAEPEPC----TCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVE 216
E+ P P GP GP P D V GD P A GP PR E
Sbjct: 667 EQGPPGPTGFQGLPGPPGPPGEGGKP-------GDQGVPGD-------PGAVGPLGPRGE 712
Score = 31.6 bits (70), Expect = 1.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
+G G +RG L G PGP GP G +G PGP
Sbjct: 788 EGTAGNDGARGLPGPL--GPPGPAGPTGEKGEPGP 820
Score = 30.8 bits (68), Expect = 2.0
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
+G G + +G A G GPPG PG GP GPI
Sbjct: 221 RGPQGLQGQQGGA-----GPTGPPGEPGDPGPMGPI 251
Score = 30.4 bits (67), Expect = 2.6
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181
G+PG PGP GP G PG P + + GA R E + + GP GPV +
Sbjct: 360 GMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGA-RGPEGPQGQRGETGPPGPVGSPGL 418
Query: 182 P 182
P
Sbjct: 419 P 419
Score = 30.0 bits (66), Expect = 3.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGP---PGPIIPP 142
+G+ G++ G G PG PG PGP GP GP PP
Sbjct: 224 QGLQGQQGGAGPT-----GPPGEPGDPGPMGPIGSRGPEGPP 260
Score = 30.0 bits (66), Expect = 3.4
Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 57 PPRAGGEAEPSEANRP--AGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114
P R G E + P AGL Q P DA ++ D G G G
Sbjct: 1058 PGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAG----QRGDPGSRGPIGPPG 1113
Query: 115 KAKKLKFGLPGPPGPPGPQGPPG 137
+A K GLPGP GP G +G G
Sbjct: 1114 RAGKR--GLPGPQGPRGDKGDHG 1134
Score = 29.6 bits (65), Expect = 4.5
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
G GK+ RG G GPPGP G +G PG
Sbjct: 498 GEEGKRGPRGDP-----GTVGPPGPVGERGAPG 525
>gi|5729785 complement component 1, q subcomponent-like 1 [Homo
sapiens]
Length = 258
Score = 43.9 bits (102), Expect = 2e-04
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 115 KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
+ K + G PGPPGPPG GPPGP+ PP
Sbjct: 69 QGKPGRTGKPGPPGPPGDPGPPGPVGPP 96
Score = 36.2 bits (82), Expect = 0.048
Identities = 29/101 (28%), Positives = 34/101 (33%), Gaps = 31/101 (30%)
Query: 41 MSAKSRPRCGPFPRSHPPRA----GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWM 96
M R C P+P P GG+A ++ P + Q P
Sbjct: 24 MLGTCRMVCDPYPARGPGAGARTDGGDALSEQSGAPPPSTLVQGP--------------- 68
Query: 97 LFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
Q G GK G PG PGPPGP GPPG
Sbjct: 69 ----QGKPGRTGKPGPPGP--------PGDPGPPGPVGPPG 97
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 43.9 bits (102), Expect = 2e-04
Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 16/113 (14%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163
KGV G+ G+ + G PG PG PG QG PGP PP + A
Sbjct: 776 KGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPP-------------GPTGEKGA 822
Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVE 216
+ P G GPV A VS G D L P GPR + E
Sbjct: 823 QGSPGVKGATGPVGPPGASVSGPPGRDGQQ---GQTGLRGTPGEKGPRGEKGE 872
Score = 39.7 bits (91), Expect = 0.004
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGP---PGPPGPQGPPG 137
RQ GV G ++G+ + G+ G PGPPGPQGPPG
Sbjct: 1504 RQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQGPPG 1544
Score = 38.9 bits (89), Expect = 0.007
Identities = 33/103 (32%), Positives = 39/103 (37%), Gaps = 29/103 (28%)
Query: 36 GSASPMSAKSRPRC-GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94
GS A+ P GP R PP G P PAG++
Sbjct: 1267 GSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVG--------------- 1311
Query: 95 WMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
+ D+G G+ RG A GLPG PGPPG GPPG
Sbjct: 1312 -----LKGDRGATGE---RGLA-----GLPGQPGPPGHPGPPG 1341
Score = 36.2 bits (82), Expect = 0.048
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
Q++KG G + G G PGPPGPPG QGP G
Sbjct: 1182 QAEKGSEGIRGPSGLP-----GSPGPPGPPGIQGPAG 1213
Score = 35.8 bits (81), Expect = 0.062
Identities = 45/154 (29%), Positives = 56/154 (36%), Gaps = 18/154 (11%)
Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117
P + G P PAGL + DP A G+ G +GK
Sbjct: 1197 PGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPA-------GPPGLMGPPGFKGKT- 1248
Query: 118 KLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVA 177
G PG PGP G G PG PP + + GA+ + R P P GP GP
Sbjct: 1249 ----GHPGLPGPKGDCGKPG---PPGSTGRPGAEGEPGAMGPQGRPGP-PGHVGPPGPPG 1300
Query: 178 -ASLAPVSATAGEDDDDVVGDVLALLAAPLAPGP 210
A +SA + D G+ L P PGP
Sbjct: 1301 QPGPAGISAVGLKGDRGATGE-RGLAGLPGQPGP 1333
Score = 35.4 bits (80), Expect = 0.082
Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPE-----PCTCGPAG-P 175
G PGPPGP GP G PG + P + + L G + P P GP G P
Sbjct: 1042 GSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLP 1101
Query: 176 VAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVE 216
+ +AGE + L P PGP PR E
Sbjct: 1102 GIKGERGYTGSAGEKGEPGPPGSEGL---PGPPGPAGPRGE 1139
Score = 35.4 bits (80), Expect = 0.082
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 101 QSDKGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138
+ ++G G +G+ GLPGPPGP GP+G GP
Sbjct: 1104 KGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGP 1142
Score = 34.3 bits (77), Expect = 0.18
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 12/33 (36%)
Query: 122 GLPGPPGPPGPQG------------PPGPIIPP 142
GLPGPPG PG +G PPGPI PP
Sbjct: 1021 GLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPP 1053
Score = 33.9 bits (76), Expect = 0.24
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 11/44 (25%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPP------GPQGPPGP 138
Q + G G + +G+ G PGPPGPP G GPPGP
Sbjct: 1143 QGNSGEKGDQGFQGQP-----GFPGPPGPPGFPGKVGSPGPPGP 1181
Score = 33.9 bits (76), Expect = 0.24
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 122 GLPGPPGPPGPQGPPG 137
G+PG PGPPGP G PG
Sbjct: 1558 GIPGIPGPPGPMGQPG 1573
Score = 33.5 bits (75), Expect = 0.31
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 115 KAKKLKFGLPGPPGPPGPQGPPGP 138
K +K FG GP G PGP GP GP
Sbjct: 598 KGEKGNFGEAGPAGSPGPPGPVGP 621
Score = 33.5 bits (75), Expect = 0.31
Identities = 27/78 (34%), Positives = 30/78 (38%), Gaps = 20/78 (25%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164
G G K +G + G PG PG PG QGPPG LKG + E
Sbjct: 742 GQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPG---------------LKGV-----QGE 781
Query: 165 PEPCTCGPAGPVAASLAP 182
P P G GP AP
Sbjct: 782 PGPPGRGVQGPQGEPGAP 799
Score = 33.1 bits (74), Expect = 0.41
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVR------ 158
G+ G+K + G+A G PGPPGP GP G G P L G VR
Sbjct: 596 GLKGEKGNFGEAGPA--GSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPG 653
Query: 159 -QRERAEPEPCTCGPAG 174
E+ EP P G G
Sbjct: 654 PSGEKGEPGPPGFGLPG 670
Score = 33.1 bits (74), Expect = 0.41
Identities = 12/15 (80%), Positives = 12/15 (80%)
Query: 124 PGPPGPPGPQGPPGP 138
PGP GPPG GPPGP
Sbjct: 903 PGPQGPPGIPGPPGP 917
Score = 33.1 bits (74), Expect = 0.41
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 122 GLPGPPGPPGPQGPPG 137
G+ G PGPPGP GPPG
Sbjct: 1039 GMRGSPGPPGPIGPPG 1054
Score = 33.1 bits (74), Expect = 0.41
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 104 KGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPP 142
+G G + + G+ F G PG PGPPGP G PG + P
Sbjct: 1137 RGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSP 1176
Score = 33.1 bits (74), Expect = 0.41
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPP---GPQGPPGP 138
+ D G G+K G+ K + G+PG PG GP GPPGP
Sbjct: 1367 KGDPGAAGQKGQAGE--KGRAGMPGGPGKSGSMGPVGPPGP 1405
Score = 32.7 bits (73), Expect = 0.53
Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 31/108 (28%)
Query: 105 GVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163
G GK RG K +K G PG PG PG G PG L G
Sbjct: 670 GKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPG---------------LSG-------- 706
Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPR 211
EP GPAGP +A + G V + P PGP+
Sbjct: 707 --EPGVQGPAGPKGEKGDGCTAC-----PSLQGTVTDMAGRPGQPGPK 747
Score = 32.3 bits (72), Expect = 0.69
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 20/58 (34%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQ--------------------GPPGPIIPP 142
G G+K G + GLPGPPGP GP GPPGP+ P
Sbjct: 1515 GTKGEKGDIGIGIAGENGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQP 1572
Score = 32.0 bits (71), Expect = 0.90
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 122 GLPGPPGPPGPQGPPGPIIP 141
GL G PGPPG GPPG +P
Sbjct: 444 GLAGEPGPPGLPGPPGIGLP 463
Score = 32.0 bits (71), Expect = 0.90
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 51 PFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
P P HP G A + P G F P + DP A + +KG G
Sbjct: 1331 PGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKG---DPGAAGQKG-QAGEKGRAG 1386
Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
GK+ + G GPPGP G +G PG
Sbjct: 1387 MPGGPGKSGSM--GPVGPPGPAGERGHPG 1413
Score = 31.6 bits (70), Expect = 1.2
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G GPPG PGP GPPG
Sbjct: 904 GPQGPPGIPGPPGPPG 919
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
+G+ G+ G GLPG PG PG GPPGP
Sbjct: 443 EGLAGEPGPPGLPGPPGIGLPGTPGDPG--GPPGP 475
Score = 31.2 bits (69), Expect = 1.5
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PG PGPPGP G PG
Sbjct: 907 GPPGIPGPPGPPGVPG 922
Score = 30.4 bits (67), Expect = 2.6
Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
Query: 122 GLPGPPGPPGP---QGPPG 137
G+PGPPGPPG QG PG
Sbjct: 910 GIPGPPGPPGVPGLQGVPG 928
Score = 30.4 bits (67), Expect = 2.6
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAG 174
G+PGPPGP G G G P + GA+ ++ P GP G
Sbjct: 1561 GIPGPPGPMGQPGKAGHCNPSDCF---------GAMPMEQQYPPMKTMKGPFG 1604
Score = 30.0 bits (66), Expect = 3.4
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 15/34 (44%)
Query: 120 KFGLPGPPGP---------------PGPQGPPGP 138
K G PGPPGP PG GPPGP
Sbjct: 1172 KVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGP 1205
Score = 29.6 bits (65), Expect = 4.5
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPG----------PPGPQGPPGPIIPP 142
+ +KG G+ + + G+PG PG P GP G PGP PP
Sbjct: 867 RGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGPQGPPGIPGPPGPP 918
Score = 28.5 bits (62), Expect = 10.0
Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 39/86 (45%)
Query: 102 SDKGVNGKKRSRGKAKKLKFGLPGPP------------------GPPGPQGPPGPIIPPE 143
S G +G S G FGLPG P GP G GPPGP+ P
Sbjct: 570 SSTGASGDVGSPG------FGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAG 623
Query: 144 ALLKEFQLLLKGAVRQRERAEP-EPC 168
+KGA + EP EPC
Sbjct: 624 ---------IKGA-----KGEPCEPC 635
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 43.5 bits (101), Expect = 3e-04
Identities = 37/115 (32%), Positives = 45/115 (39%), Gaps = 6/115 (5%)
Query: 101 QSDKGVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQ 159
+ KG G + RG A + G+PG PG PGP GPPGP PP L G +
Sbjct: 111 EGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEK 170
Query: 160 RERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214
P GP+GP P A + G+ P A GP PR
Sbjct: 171 STGGISVPGPMGPSGPRGLP-GPPGAPGPQGFQGPPGEP----GEPGASGPMGPR 220
Score = 43.5 bits (101), Expect = 3e-04
Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGK- 115
PP + GE PS A+ PAG PR G+NG G
Sbjct: 1122 PPGSPGEQGPSGASGPAG----------------PRGPPGSAGAPGKDGLNGLPGPIGPP 1165
Query: 116 AKKLKFGLPGPPGPPGPQGPPGPIIPPEA 144
+ + G GP GPPGP GPPGP PP A
Sbjct: 1166 GPRGRTGDAGPVGPPGPPGPPGPPGPPSA 1194
Score = 43.1 bits (100), Expect = 4e-04
Identities = 37/111 (33%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 36 GSASPMSAKSRPR-------CGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHS 88
G A P A P GP P A G+ S + PAG + +R
Sbjct: 746 GDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEP 805
Query: 89 VDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
P A +D G G K G A G GPPGP GP GPPGPI
Sbjct: 806 GPPGPAGFAGPPGAD-GQPGAKGEPGDAGAK--GDAGPPGPAGPAGPPGPI 853
Score = 40.4 bits (93), Expect = 0.003
Identities = 35/106 (33%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAG--GEAEPSEANRPAGLAVFQEPTAERAHSVDPRD 93
G A P A P P P ++G GE P+ P G + P + PR
Sbjct: 1040 GPAGPPGAPGAPGA-PGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQG----PR- 1093
Query: 94 AWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGP 138
DKG G++ RG K + GL GPPGPPG G GP
Sbjct: 1094 --------GDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGP 1131
Score = 40.0 bits (92), Expect = 0.003
Identities = 50/173 (28%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGK- 115
PP GE A+ PAG P R L ++ ++G G G+
Sbjct: 927 PPGPAGEKGSPGADGPAGAPGTPGPQGIAGQ----RGVVGLPGQRGERGFPGLPGPSGEP 982
Query: 116 AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQ--RERAEPEPCTCGPA 173
K+ G G GPPGP GPPG PP +E +G+ + A+ + GPA
Sbjct: 983 GKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPA 1042
Query: 174 GPVAASLA-----PVSATAGEDDDDVVGDVLALLAAPLAP-------GPRAPR 214
GP A A PV D G A A P+ P GP+ PR
Sbjct: 1043 GPPGAPGAPGAPGPVGPAGKSGDRGETGP--AGPAGPVGPVGARGPAGPQGPR 1093
Score = 38.9 bits (89), Expect = 0.007
Identities = 38/107 (35%), Positives = 43/107 (40%), Gaps = 15/107 (14%)
Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163
G G++ +G A F GLPGP GPPG G PG P L +G ER
Sbjct: 626 GPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARG-----ERG 680
Query: 164 EP-EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
P E GP GP P A +D GD AP APG
Sbjct: 681 FPGERGVQGPPGPA----GPRGANGAPGNDGAKGDA----GAPGAPG 719
Score = 38.5 bits (88), Expect = 0.010
Identities = 31/102 (30%), Positives = 38/102 (37%), Gaps = 29/102 (28%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
GSA P A P G R PP G A P PAG
Sbjct: 866 GSAGPPGATGFP--GAAGRVGPPGPSGNAGPPGPPGPAG--------------------- 902
Query: 96 MLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
++ KG G+ G+ ++ G PGPPGP G +G PG
Sbjct: 903 ----KEGGKGPRGETGPAGRPGEV--GPPGPPGPAGEKGSPG 938
Score = 37.0 bits (84), Expect = 0.028
Identities = 33/106 (31%), Positives = 36/106 (33%), Gaps = 31/106 (29%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEP--------------EP 167
G GPPGP GP GPPG GAV + A P EP
Sbjct: 329 GAAGPPGPTGPAGPPG---------------FPGAVGAKGEAGPQGPRGSEGPQGVRGEP 373
Query: 168 CTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
GPAG AA A G+ + AP PG R P
Sbjct: 374 GPPGPAG--AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGP 417
Score = 37.0 bits (84), Expect = 0.028
Identities = 33/93 (35%), Positives = 35/93 (37%), Gaps = 32/93 (34%)
Query: 54 RSHPPRAGGEAEPSEANRP--AGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKR 111
R P AG + P EA RP AGL P A KG+ G
Sbjct: 511 RGSPGPAGPKGSPGEAGRPGEAGL-----PGA--------------------KGLTGSPG 545
Query: 112 SRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEA 144
S G G GPPGP G G PGP PP A
Sbjct: 546 SPGPD-----GKTGPPGPAGQDGRPGPPGPPGA 573
Score = 35.8 bits (81), Expect = 0.062
Identities = 40/132 (30%), Positives = 47/132 (35%), Gaps = 48/132 (36%)
Query: 105 GVNGKKRSRGKAKKL-KFGLPGPPGPPGP---------QGPPGPIIPPEALLKEFQLLLK 154
G G K + G+ K + G+PGPPG GP QGPPGP P
Sbjct: 581 GFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGP------------- 627
Query: 155 GAVRQRERAEPEPCTC-------GPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLA 207
ER E P GPAGP + P + V GD+ A
Sbjct: 628 ----AGERGEQGPAGSPGFQGLPGPAGPPGEAGKP-------GEQGVPGDL-------GA 669
Query: 208 PGPRAPRVEAAF 219
PGP R E F
Sbjct: 670 PGPSGARGERGF 681
Score = 35.8 bits (81), Expect = 0.062
Identities = 50/184 (27%), Positives = 56/184 (30%), Gaps = 27/184 (14%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
G A P A+ P G PP G A P A+ G + + P A
Sbjct: 788 GPAGPTGARGAP--GDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG 845
Query: 96 ML-----FVRQSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPPEALLKEF 149
G G + S G F G G GPPGP G GP PP KE
Sbjct: 846 PAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE- 904
Query: 150 QLLLKGAVRQRERAEP--EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLA 207
G R P P GP GP P D G AP
Sbjct: 905 -----GGKGPRGETGPAGRPGEVGPPGPP----GPAGEKGSPGADGPAG-------APGT 948
Query: 208 PGPR 211
PGP+
Sbjct: 949 PGPQ 952
Score = 33.5 bits (75), Expect = 0.31
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 18/95 (18%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGP--VAAS 179
G+ GP G GP+GP GP PP + + + P GP GP + +
Sbjct: 109 GVEGPKGDTGPRGPRGPAGPPG----------RDGIPGQPGLPGPPGPPGPPGPPGLGGN 158
Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214
AP + G D+ G ++ P GP PR
Sbjct: 159 FAP-QLSYGYDEKSTGG-----ISVPGPMGPSGPR 187
Score = 33.5 bits (75), Expect = 0.31
Identities = 34/108 (31%), Positives = 36/108 (33%), Gaps = 25/108 (23%)
Query: 30 TGGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSV 89
TGG + PM S PR P P P G + P E P P R
Sbjct: 172 TGG--ISVPGPMGP-SGPRGLPGPPGAPGPQGFQGPPGEPGEPGASG----PMGPRGPPG 224
Query: 90 DPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
P G NG GK G PG GPPGPQG G
Sbjct: 225 PP-------------GKNGDDGEAGKP-----GRPGERGPPGPQGARG 254
Score = 33.5 bits (75), Expect = 0.31
Identities = 34/111 (30%), Positives = 40/111 (36%), Gaps = 18/111 (16%)
Query: 36 GSASPMSAKSRPRC-GPFPRSHP---PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDP 91
GS P + P GP + P P A G+ AN G+A R S
Sbjct: 362 GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGP- 420
Query: 92 RDAWMLFVRQSDKGVNGKKRSRGK----AKKLKFGLPGPPGPPGPQGPPGP 138
Q G G K + G+ K G G PGP G QGPPGP
Sbjct: 421 ---------QGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGP 462
Score = 32.7 bits (73), Expect = 0.53
Identities = 43/148 (29%), Positives = 48/148 (32%), Gaps = 23/148 (15%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
GS AK P GP PP GE A G P ER
Sbjct: 440 GSKGDTGAKGEP--GPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS----- 492
Query: 96 MLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI-IPPEALLKEFQLLLK 154
+ G +G +G A G G PGP GP+G PG P EA L K
Sbjct: 493 -----RGFPGADGVAGPKGPA-----GERGSPGPAGPKGSPGEAGRPGEAGLPG----AK 538
Query: 155 GAVRQRERAEPEPCTCGPAGPVAASLAP 182
G P+ T GP GP P
Sbjct: 539 GLTGSPGSPGPDGKT-GPPGPAGQDGRP 565
Score = 32.3 bits (72), Expect = 0.69
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 122 GLPGPPGPPGPQGPPGP 138
G PG GP GP+GPPGP
Sbjct: 209 GEPGASGPMGPRGPPGP 225
Score = 32.0 bits (71), Expect = 0.90
Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEP-EPCTCGPAGPVAASL 180
G PG PG PG GP GP PP K E +P P GP GP A
Sbjct: 203 GPPGEPGEPGASGPMGPRGPPGPPGKNGD--------DGEAGKPGRPGERGPPGPQGARG 254
Query: 181 APVSA 185
P +A
Sbjct: 255 LPGTA 259
Score = 32.0 bits (71), Expect = 0.90
Identities = 31/97 (31%), Positives = 34/97 (35%), Gaps = 33/97 (34%)
Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGP---------------PGPIIPPEAL 145
Q G+ G RG A GLPGP G G GP GPI PP
Sbjct: 721 QGAPGLQGMPGERGAA-----GLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGP- 774
Query: 146 LKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLAP 182
GA + + P GPAGP A AP
Sbjct: 775 --------AGAPGDKGESGPS----GPAGPTGARGAP 799
Score = 31.6 bits (70), Expect = 1.2
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 50 GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVR--QSDKGV 106
GP PR P G + EA +P P + A + P A + ++ + G+
Sbjct: 215 GPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGL-PGTAGLPGMKGHRGFSGL 273
Query: 107 NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
+G K G A G G PG PG G PG + P
Sbjct: 274 DGAKGDAGPA-----GPKGEPGSPGENGAPGQMGP 303
Score = 30.8 bits (68), Expect = 2.0
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 122 GLPGPPGPPGPQGPPGPIIPP 142
G PG PG GP GP GP PP
Sbjct: 407 GAPGFPGARGPSGPQGPGGPP 427
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 43.5 bits (101), Expect = 3e-04
Identities = 32/74 (43%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPG---PQGPPGPIIPPEALLKEFQLLLKGAVRQRE 161
GV G K G G PGPPGP G P GPPG PP A E + KGA +
Sbjct: 1342 GVGGDKGEDGDP-----GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-KGEA 1395
Query: 162 RAEPEPCTCGPAGP 175
AE P GP GP
Sbjct: 1396 GAEGPPGKTGPVGP 1409
Score = 40.0 bits (92), Expect = 0.003
Identities = 54/188 (28%), Positives = 62/188 (32%), Gaps = 53/188 (28%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGG-EAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94
G PM P GP P A G + P G+ EP E + P +A
Sbjct: 1225 GDVGPMGPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEP-GEAGNPGPPGEA 1281
Query: 95 WMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLK 154
GV G K RG+ K + G PG GPPG +GPPG P
Sbjct: 1282 ----------GVGGPKGERGE--KGEAGPPGAAGPPGAKGPPGDDGP------------- 1316
Query: 155 GAVRQRERAEPEPC----TCGPAG-PVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
+ P P GP G P A V GED D P PG
Sbjct: 1317 -------KGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD------------PGQPG 1357
Query: 210 PRAPRVEA 217
P P EA
Sbjct: 1358 PPGPSGEA 1365
Score = 39.3 bits (90), Expect = 0.006
Identities = 48/181 (26%), Positives = 65/181 (35%), Gaps = 18/181 (9%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93
G+A P+ RP P+ P AG + P E PAG Q P +
Sbjct: 1078 GTAGPIGLPGRPG----PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS 1133
Query: 94 AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLL 153
DKG G+ +G G G GPPGP G GP+ P + +
Sbjct: 1134 PG----EDGDKGEIGEPGQKGSK-----GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1184
Query: 154 KGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
+G + E P P L + GE ++ GDV + P PGPR P
Sbjct: 1185 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGEN--GDV-GPMGPPGPPGPRGP 1241
Query: 214 R 214
+
Sbjct: 1242 Q 1242
Score = 37.7 bits (86), Expect = 0.016
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPT-----AERAHSVDPRDAWMLFVRQSDKGVNGKKR 111
P + G + + E N P G Q P A PR +F ++ D+G G
Sbjct: 1146 PGQKGSKGDKGE-NGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPG 1204
Query: 112 SRG-------------KAKKLKFGLPGPPGPPGPQGPPGP 138
G K + G GPPGPPGP+GP GP
Sbjct: 1205 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGP 1244
Score = 37.7 bits (86), Expect = 0.016
Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
G P + P GP P A G+ P P GL + + P
Sbjct: 1414 GKPGPEGLRGIP--GPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG 1471
Query: 96 MLFV--RQSDKGVNGKKRSRGK-AKKLKFGLPGPPGP---PGPQGPPGP 138
++ Q +KG G ++G K G+PGP GP PGP G PGP
Sbjct: 1472 LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGP 1520
Score = 37.4 bits (85), Expect = 0.021
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALL 146
+G G K S G A + G G PGPPG GPPG +I P +L
Sbjct: 1521 QGPKGNKGSTGPAGQK--GDSGLPGPPGSPGPPGEVIQPLPIL 1561
Score = 36.6 bits (83), Expect = 0.037
Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 53 PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112
P P AGG+ EP + G+ + R P + Q G G+K
Sbjct: 1169 PVGAPGIAGGDGEPGPRGQQ-GMFGQKGDEGARGFPGPPGPIGL----QGLPGPPGEKGE 1223
Query: 113 RGKAKKLKFGLPGPPGPPGPQGP---PGPIIPP 142
G + G PGPPGP GPQGP GP PP
Sbjct: 1224 NGDVGPM--GPPGPPGPRGPQGPNGADGPQGPP 1254
Score = 35.4 bits (80), Expect = 0.082
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
+G GK +G + G PGPPG GPQGP GP+
Sbjct: 906 RGPTGKPGPKGTSGG--DGPPGPPGERGPQGPQGPV 939
Score = 35.4 bits (80), Expect = 0.082
Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 51/154 (33%)
Query: 36 GSASPMSAKSRP-----RCGPFPRSHPPRAGGEAEPSEANR------------------- 71
G+A P AK P + P P P G EP A +
Sbjct: 1300 GAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP 1359
Query: 72 -PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK---------- 120
P+G A P +R P A RQ +KG G+ + G K
Sbjct: 1360 GPSGEAGPPGPPGKRG----PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1415
Query: 121 ------FGLPGP------PGPPGPQGPPGPIIPP 142
G+PGP PG G GPPGP+ PP
Sbjct: 1416 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP 1449
Score = 35.0 bits (79), Expect = 0.11
Identities = 41/147 (27%), Positives = 49/147 (33%), Gaps = 31/147 (21%)
Query: 54 RSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFV--------RQSDKG 105
++ PP GG P G P ER H P + + D G
Sbjct: 971 KTGPPGPGGVVGPQGPTGETG------PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 1024
Query: 106 VNGKKRSRGKAKKLKF----GLPGPPGPPG------PQGPPGPIIPPEALLKEFQLLLKG 155
G G A F GLPG G PG PQGPPGP+ P + G
Sbjct: 1025 PQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPG---ERGSAGTAG 1081
Query: 156 AVRQRERAEPEPCTCGPAGPVAASLAP 182
+ R P+ GP GP AP
Sbjct: 1082 PIGLPGRPGPQ----GPPGPAGEKGAP 1104
Score = 33.9 bits (76), Expect = 0.24
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
R G G ++G++ G PGP GP G QGPPGP P
Sbjct: 551 RPGPVGGPGSSGAKGES-----GDPGPQGPRGVQGPPGPTGKP 588
Score = 32.7 bits (73), Expect = 0.53
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 122 GLPGPPGPPGPQGPPGP 138
G PGP G PGPQGP GP
Sbjct: 706 GNPGPQGLPGPQGPIGP 722
Score = 32.3 bits (72), Expect = 0.69
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
GV+G +G G G PGPPG QG PGP
Sbjct: 682 GVDGPPGPKGN-----MGPQGEPGPPGQQGNPGP 710
Score = 32.3 bits (72), Expect = 0.69
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
D G +G+ +GK G+PG PG PG QGP G
Sbjct: 836 DPGPSGQAGEKGK-----LGVPGLPGYPGRQGPKG 865
Score = 32.0 bits (71), Expect = 0.90
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 105 GVNGKKRSRGKAKKLKFGL-----PGPPGPPGPQGPP---GPIIPP 142
G G+K +G+ ++ G+ PGP GP G GPP GP PP
Sbjct: 432 GAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPP 477
Score = 32.0 bits (71), Expect = 0.90
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 8/34 (23%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
G NG+K +RG A G PGP G +GP GP
Sbjct: 874 GANGEKGARGVA--------GKPGPRGQRGPTGP 899
Score = 31.2 bits (69), Expect = 1.5
Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
GP PP G P P G P E+ P A + G +G
Sbjct: 694 GPQGEPGPPGQQGNPGPQGLPGPQGPI---GPPGEKGPQGKPGLAGL-------PGADGP 743
Query: 110 KRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138
GK + + G GPPGP GP G PGP
Sbjct: 744 PGHPGKEGQSGEKGALGPPGPQGPIGYPGP 773
Score = 31.2 bits (69), Expect = 1.5
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 122 GLPGPPGPPGPQGPPGP 138
G GP G PGP+GPPGP
Sbjct: 934 GPQGPVGFPGPKGPPGP 950
Score = 30.4 bits (67), Expect = 2.6
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAK------KLKFGLPGPPGPPGPQGPPGPIIPP 142
P ML R G G S +A+ + + L GPPGP G G PGP+ P
Sbjct: 501 PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 558
Score = 30.4 bits (67), Expect = 2.6
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 10/108 (9%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
G PM RP GP A GE+ P G+ PT + P
Sbjct: 541 GPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPG--- 595
Query: 96 MLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
+G+ G+ ++G + GLPG G G +GP GP PP
Sbjct: 596 ----ADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPP 639
Score = 30.4 bits (67), Expect = 2.6
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 122 GLPGPPGPPGPQGPPGPIIPP 142
G G PGP G GP GPI PP
Sbjct: 703 GQQGNPGPQGLPGPQGPIGPP 723
Score = 30.4 bits (67), Expect = 2.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGP GPPGP G G
Sbjct: 940 GFPGPKGPPGPPGKDG 955
Score = 30.0 bits (66), Expect = 3.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G+ GPPG GP GPPG
Sbjct: 463 GIMGPPGLQGPTGPPG 478
Score = 30.0 bits (66), Expect = 3.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G GPPG PG +GPPG
Sbjct: 472 GPTGPPGDPGDRGPPG 487
Score = 30.0 bits (66), Expect = 3.4
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPG 137
G G++ +G + F G GPPGPPG G PG
Sbjct: 925 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 958
Score = 29.6 bits (65), Expect = 4.5
Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 24/105 (22%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQL---LLKGAVRQRERAEPEP-------CTCG 171
G PG PG PG G PGP P L+ F+ KG + A+ + G
Sbjct: 484 GPPGRPGLPGADGLPGP--PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRG 541
Query: 172 PAGPVAAS--LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214
P GP+ + PV GD PGP+ PR
Sbjct: 542 PPGPMGLTGRPGPVGGPGSSGAKGESGD----------PGPQGPR 576
Score = 29.6 bits (65), Expect = 4.5
Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 19/114 (16%)
Query: 31 GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPA---GLAVFQEPTAERAH 87
GG A S P+ GP PP G +P + RP G + EP A+
Sbjct: 556 GGPGSSGAKGESGDPGPQ-GPRGVQGPP--GPTGKPGKRGRPGADGGRGMPGEPGAKGDR 612
Query: 88 SVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
D DKG G++ +G PGPPG G +G G I P
Sbjct: 613 GFDGLPGL-----PGDKGHRGERGPQGP--------PGPPGDDGMRGEDGEIGP 653
Score = 29.3 bits (64), Expect = 5.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 122 GLPGPPGPPGPQGPPGP 138
G PG PG G GPPGP
Sbjct: 673 GAPGQPGMAGVDGPPGP 689
Score = 28.9 bits (63), Expect = 7.6
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 104 KGVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162
KG G K RG+ ++ G GP GP G GP G P ++ +L + G R
Sbjct: 801 KGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 860
Query: 163 AEPEPCTCGPAGPVAASLAPVSATAGE 189
P+ T P P A AG+
Sbjct: 861 QGPKGSTGFPGFPGANGEKGARGVAGK 887
Score = 28.9 bits (63), Expect = 7.6
Identities = 30/109 (27%), Positives = 35/109 (32%), Gaps = 19/109 (17%)
Query: 30 TGGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSV 89
TG R A + K P+ G PP GE P P G + P
Sbjct: 897 TGPRGSRGARGPTGKPGPK-GTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 955
Query: 90 DPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
P G G+ +GK GPPGP G GP GP
Sbjct: 956 LP----------GHPGQRGETGFQGKT--------GPPGPGGVVGPQGP 986
Score = 28.9 bits (63), Expect = 7.6
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
Query: 105 GVNGKKRSRGKAKKLKFGLPG------PPGPPGPQGPPG 137
G G++ S G A + GLPG PPGP G +G PG
Sbjct: 1069 GSPGERGSAGTAGPI--GLPGRPGPQGPPGPAGEKGAPG 1105
Score = 28.9 bits (63), Expect = 7.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 122 GLPGPPGPPGPQGPPGP 138
GLPGP GP G +G GP
Sbjct: 1516 GLPGPQGPKGNKGSTGP 1532
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 43.5 bits (101), Expect = 3e-04
Identities = 32/74 (43%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPG---PQGPPGPIIPPEALLKEFQLLLKGAVRQRE 161
GV G K G G PGPPGP G P GPPG PP A E + KGA +
Sbjct: 1291 GVGGDKGEDGDP-----GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-KGEA 1344
Query: 162 RAEPEPCTCGPAGP 175
AE P GP GP
Sbjct: 1345 GAEGPPGKTGPVGP 1358
Score = 40.0 bits (92), Expect = 0.003
Identities = 54/188 (28%), Positives = 62/188 (32%), Gaps = 53/188 (28%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGG-EAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94
G PM P GP P A G + P G+ EP E + P +A
Sbjct: 1174 GDVGPMGPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEP-GEAGNPGPPGEA 1230
Query: 95 WMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLK 154
GV G K RG+ K + G PG GPPG +GPPG P
Sbjct: 1231 ----------GVGGPKGERGE--KGEAGPPGAAGPPGAKGPPGDDGP------------- 1265
Query: 155 GAVRQRERAEPEPC----TCGPAG-PVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
+ P P GP G P A V GED D P PG
Sbjct: 1266 -------KGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD------------PGQPG 1306
Query: 210 PRAPRVEA 217
P P EA
Sbjct: 1307 PPGPSGEA 1314
Score = 39.3 bits (90), Expect = 0.006
Identities = 48/181 (26%), Positives = 65/181 (35%), Gaps = 18/181 (9%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93
G+A P+ RP P+ P AG + P E PAG Q P +
Sbjct: 1027 GTAGPIGLPGRPG----PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS 1082
Query: 94 AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLL 153
DKG G+ +G G G GPPGP G GP+ P + +
Sbjct: 1083 PG----EDGDKGEIGEPGQKGSK-----GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1133
Query: 154 KGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
+G + E P P L + GE ++ GDV + P PGPR P
Sbjct: 1134 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGEN--GDV-GPMGPPGPPGPRGP 1190
Query: 214 R 214
+
Sbjct: 1191 Q 1191
Score = 37.7 bits (86), Expect = 0.016
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPT-----AERAHSVDPRDAWMLFVRQSDKGVNGKKR 111
P + G + + E N P G Q P A PR +F ++ D+G G
Sbjct: 1095 PGQKGSKGDKGE-NGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPG 1153
Query: 112 SRG-------------KAKKLKFGLPGPPGPPGPQGPPGP 138
G K + G GPPGPPGP+GP GP
Sbjct: 1154 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGP 1193
Score = 37.7 bits (86), Expect = 0.016
Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
G P + P GP P A G+ P P GL + + P
Sbjct: 1363 GKPGPEGLRGIP--GPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG 1420
Query: 96 MLFV--RQSDKGVNGKKRSRGK-AKKLKFGLPGPPGP---PGPQGPPGP 138
++ Q +KG G ++G K G+PGP GP PGP G PGP
Sbjct: 1421 LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGP 1469
Score = 37.4 bits (85), Expect = 0.021
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALL 146
+G G K S G A + G G PGPPG GPPG +I P +L
Sbjct: 1470 QGPKGNKGSTGPAGQK--GDSGLPGPPGSPGPPGEVIQPLPIL 1510
Score = 36.6 bits (83), Expect = 0.037
Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 53 PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112
P P AGG+ EP + G+ + R P + Q G G+K
Sbjct: 1118 PVGAPGIAGGDGEPGPRGQQ-GMFGQKGDEGARGFPGPPGPIGL----QGLPGPPGEKGE 1172
Query: 113 RGKAKKLKFGLPGPPGPPGPQGP---PGPIIPP 142
G + G PGPPGP GPQGP GP PP
Sbjct: 1173 NGDVGPM--GPPGPPGPRGPQGPNGADGPQGPP 1203
Score = 35.4 bits (80), Expect = 0.082
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
+G GK +G + G PGPPG GPQGP GP+
Sbjct: 855 RGPTGKPGPKGTSGG--DGPPGPPGERGPQGPQGPV 888
Score = 35.4 bits (80), Expect = 0.082
Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 51/154 (33%)
Query: 36 GSASPMSAKSRP-----RCGPFPRSHPPRAGGEAEPSEANR------------------- 71
G+A P AK P + P P P G EP A +
Sbjct: 1249 GAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP 1308
Query: 72 -PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK---------- 120
P+G A P +R P A RQ +KG G+ + G K
Sbjct: 1309 GPSGEAGPPGPPGKRG----PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1364
Query: 121 ------FGLPGP------PGPPGPQGPPGPIIPP 142
G+PGP PG G GPPGP+ PP
Sbjct: 1365 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP 1398
Score = 35.0 bits (79), Expect = 0.11
Identities = 41/147 (27%), Positives = 49/147 (33%), Gaps = 31/147 (21%)
Query: 54 RSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFV--------RQSDKG 105
++ PP GG P G P ER H P + + D G
Sbjct: 920 KTGPPGPGGVVGPQGPTGETG------PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 973
Query: 106 VNGKKRSRGKAKKLKF----GLPGPPGPPG------PQGPPGPIIPPEALLKEFQLLLKG 155
G G A F GLPG G PG PQGPPGP+ P + G
Sbjct: 974 PQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPG---ERGSAGTAG 1030
Query: 156 AVRQRERAEPEPCTCGPAGPVAASLAP 182
+ R P+ GP GP AP
Sbjct: 1031 PIGLPGRPGPQ----GPPGPAGEKGAP 1053
Score = 33.9 bits (76), Expect = 0.24
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
R G G ++G++ G PGP GP G QGPPGP P
Sbjct: 500 RPGPVGGPGSSGAKGES-----GDPGPQGPRGVQGPPGPTGKP 537
Score = 32.7 bits (73), Expect = 0.53
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 122 GLPGPPGPPGPQGPPGP 138
G PGP G PGPQGP GP
Sbjct: 655 GNPGPQGLPGPQGPIGP 671
Score = 32.3 bits (72), Expect = 0.69
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
GV+G +G G G PGPPG QG PGP
Sbjct: 631 GVDGPPGPKGN-----MGPQGEPGPPGQQGNPGP 659
Score = 32.3 bits (72), Expect = 0.69
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
D G +G+ +GK G+PG PG PG QGP G
Sbjct: 785 DPGPSGQAGEKGK-----LGVPGLPGYPGRQGPKG 814
Score = 32.0 bits (71), Expect = 0.90
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 105 GVNGKKRSRGKAKKLKFGL-----PGPPGPPGPQGPP---GPIIPP 142
G G+K +G+ ++ G+ PGP GP G GPP GP PP
Sbjct: 381 GAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPP 426
Score = 32.0 bits (71), Expect = 0.90
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 8/34 (23%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
G NG+K +RG A G PGP G +GP GP
Sbjct: 823 GANGEKGARGVA--------GKPGPRGQRGPTGP 848
Score = 31.2 bits (69), Expect = 1.5
Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
GP PP G P P G P E+ P A + G +G
Sbjct: 643 GPQGEPGPPGQQGNPGPQGLPGPQGPI---GPPGEKGPQGKPGLAGL-------PGADGP 692
Query: 110 KRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138
GK + + G GPPGP GP G PGP
Sbjct: 693 PGHPGKEGQSGEKGALGPPGPQGPIGYPGP 722
Score = 31.2 bits (69), Expect = 1.5
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 122 GLPGPPGPPGPQGPPGP 138
G GP G PGP+GPPGP
Sbjct: 883 GPQGPVGFPGPKGPPGP 899
Score = 30.4 bits (67), Expect = 2.6
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAK------KLKFGLPGPPGPPGPQGPPGPIIPP 142
P ML R G G S +A+ + + L GPPGP G G PGP+ P
Sbjct: 450 PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 507
Score = 30.4 bits (67), Expect = 2.6
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 10/108 (9%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
G PM RP GP A GE+ P G+ PT + P
Sbjct: 490 GPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPG--- 544
Query: 96 MLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
+G+ G+ ++G + GLPG G G +GP GP PP
Sbjct: 545 ----ADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPP 588
Score = 30.4 bits (67), Expect = 2.6
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 122 GLPGPPGPPGPQGPPGPIIPP 142
G G PGP G GP GPI PP
Sbjct: 652 GQQGNPGPQGLPGPQGPIGPP 672
Score = 30.4 bits (67), Expect = 2.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGP GPPGP G G
Sbjct: 889 GFPGPKGPPGPPGKDG 904
Score = 30.0 bits (66), Expect = 3.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G+ GPPG GP GPPG
Sbjct: 412 GIMGPPGLQGPTGPPG 427
Score = 30.0 bits (66), Expect = 3.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G GPPG PG +GPPG
Sbjct: 421 GPTGPPGDPGDRGPPG 436
Score = 30.0 bits (66), Expect = 3.4
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPG 137
G G++ +G + F G GPPGPPG G PG
Sbjct: 874 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 907
Score = 29.6 bits (65), Expect = 4.5
Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 24/105 (22%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQL---LLKGAVRQRERAEPEP-------CTCG 171
G PG PG PG G PGP P L+ F+ KG + A+ + G
Sbjct: 433 GPPGRPGLPGADGLPGP--PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRG 490
Query: 172 PAGPVAAS--LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214
P GP+ + PV GD PGP+ PR
Sbjct: 491 PPGPMGLTGRPGPVGGPGSSGAKGESGD----------PGPQGPR 525
Score = 29.6 bits (65), Expect = 4.5
Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 19/114 (16%)
Query: 31 GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPA---GLAVFQEPTAERAH 87
GG A S P+ GP PP G +P + RP G + EP A+
Sbjct: 505 GGPGSSGAKGESGDPGPQ-GPRGVQGPP--GPTGKPGKRGRPGADGGRGMPGEPGAKGDR 561
Query: 88 SVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
D DKG G++ +G PGPPG G +G G I P
Sbjct: 562 GFDGLPGL-----PGDKGHRGERGPQGP--------PGPPGDDGMRGEDGEIGP 602
Score = 29.3 bits (64), Expect = 5.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 122 GLPGPPGPPGPQGPPGP 138
G PG PG G GPPGP
Sbjct: 622 GAPGQPGMAGVDGPPGP 638
Score = 28.9 bits (63), Expect = 7.6
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 104 KGVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162
KG G K RG+ ++ G GP GP G GP G P ++ +L + G R
Sbjct: 750 KGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 809
Query: 163 AEPEPCTCGPAGPVAASLAPVSATAGE 189
P+ T P P A AG+
Sbjct: 810 QGPKGSTGFPGFPGANGEKGARGVAGK 836
Score = 28.9 bits (63), Expect = 7.6
Identities = 30/109 (27%), Positives = 35/109 (32%), Gaps = 19/109 (17%)
Query: 30 TGGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSV 89
TG R A + K P+ G PP GE P P G + P
Sbjct: 846 TGPRGSRGARGPTGKPGPK-GTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 904
Query: 90 DPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
P G G+ +GK GPPGP G GP GP
Sbjct: 905 LP----------GHPGQRGETGFQGKT--------GPPGPGGVVGPQGP 935
Score = 28.9 bits (63), Expect = 7.6
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
Query: 105 GVNGKKRSRGKAKKLKFGLPG------PPGPPGPQGPPG 137
G G++ S G A + GLPG PPGP G +G PG
Sbjct: 1018 GSPGERGSAGTAGPI--GLPGRPGPQGPPGPAGEKGAPG 1054
Score = 28.9 bits (63), Expect = 7.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 122 GLPGPPGPPGPQGPPGP 138
GLPGP GP G +G GP
Sbjct: 1465 GLPGPQGPKGNKGSTGP 1481
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 43.5 bits (101), Expect = 3e-04
Identities = 32/74 (43%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPG---PQGPPGPIIPPEALLKEFQLLLKGAVRQRE 161
GV G K G G PGPPGP G P GPPG PP A E + KGA +
Sbjct: 1330 GVGGDKGEDGDP-----GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-KGEA 1383
Query: 162 RAEPEPCTCGPAGP 175
AE P GP GP
Sbjct: 1384 GAEGPPGKTGPVGP 1397
Score = 40.0 bits (92), Expect = 0.003
Identities = 54/188 (28%), Positives = 62/188 (32%), Gaps = 53/188 (28%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGG-EAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94
G PM P GP P A G + P G+ EP E + P +A
Sbjct: 1213 GDVGPMGPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEP-GEAGNPGPPGEA 1269
Query: 95 WMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLK 154
GV G K RG+ K + G PG GPPG +GPPG P
Sbjct: 1270 ----------GVGGPKGERGE--KGEAGPPGAAGPPGAKGPPGDDGP------------- 1304
Query: 155 GAVRQRERAEPEPC----TCGPAG-PVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
+ P P GP G P A V GED D P PG
Sbjct: 1305 -------KGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD------------PGQPG 1345
Query: 210 PRAPRVEA 217
P P EA
Sbjct: 1346 PPGPSGEA 1353
Score = 39.3 bits (90), Expect = 0.006
Identities = 48/181 (26%), Positives = 65/181 (35%), Gaps = 18/181 (9%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93
G+A P+ RP P+ P AG + P E PAG Q P +
Sbjct: 1066 GTAGPIGLPGRPG----PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS 1121
Query: 94 AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLL 153
DKG G+ +G G G GPPGP G GP+ P + +
Sbjct: 1122 PG----EDGDKGEIGEPGQKGSK-----GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1172
Query: 154 KGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
+G + E P P L + GE ++ GDV + P PGPR P
Sbjct: 1173 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGEN--GDV-GPMGPPGPPGPRGP 1229
Query: 214 R 214
+
Sbjct: 1230 Q 1230
Score = 37.7 bits (86), Expect = 0.016
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPT-----AERAHSVDPRDAWMLFVRQSDKGVNGKKR 111
P + G + + E N P G Q P A PR +F ++ D+G G
Sbjct: 1134 PGQKGSKGDKGE-NGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPG 1192
Query: 112 SRG-------------KAKKLKFGLPGPPGPPGPQGPPGP 138
G K + G GPPGPPGP+GP GP
Sbjct: 1193 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGP 1232
Score = 37.7 bits (86), Expect = 0.016
Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
G P + P GP P A G+ P P GL + + P
Sbjct: 1402 GKPGPEGLRGIP--GPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG 1459
Query: 96 MLFV--RQSDKGVNGKKRSRGK-AKKLKFGLPGPPGP---PGPQGPPGP 138
++ Q +KG G ++G K G+PGP GP PGP G PGP
Sbjct: 1460 LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGP 1508
Score = 37.4 bits (85), Expect = 0.021
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALL 146
+G G K S G A + G G PGPPG GPPG +I P +L
Sbjct: 1509 QGPKGNKGSTGPAGQK--GDSGLPGPPGSPGPPGEVIQPLPIL 1549
Score = 36.6 bits (83), Expect = 0.037
Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 53 PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112
P P AGG+ EP + G+ + R P + Q G G+K
Sbjct: 1157 PVGAPGIAGGDGEPGPRGQQ-GMFGQKGDEGARGFPGPPGPIGL----QGLPGPPGEKGE 1211
Query: 113 RGKAKKLKFGLPGPPGPPGPQGP---PGPIIPP 142
G + G PGPPGP GPQGP GP PP
Sbjct: 1212 NGDVGPM--GPPGPPGPRGPQGPNGADGPQGPP 1242
Score = 35.4 bits (80), Expect = 0.082
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
+G GK +G + G PGPPG GPQGP GP+
Sbjct: 894 RGPTGKPGPKGTSGG--DGPPGPPGERGPQGPQGPV 927
Score = 35.4 bits (80), Expect = 0.082
Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 51/154 (33%)
Query: 36 GSASPMSAKSRP-----RCGPFPRSHPPRAGGEAEPSEANR------------------- 71
G+A P AK P + P P P G EP A +
Sbjct: 1288 GAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP 1347
Query: 72 -PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK---------- 120
P+G A P +R P A RQ +KG G+ + G K
Sbjct: 1348 GPSGEAGPPGPPGKRG----PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1403
Query: 121 ------FGLPGP------PGPPGPQGPPGPIIPP 142
G+PGP PG G GPPGP+ PP
Sbjct: 1404 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP 1437
Score = 35.0 bits (79), Expect = 0.11
Identities = 41/147 (27%), Positives = 49/147 (33%), Gaps = 31/147 (21%)
Query: 54 RSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFV--------RQSDKG 105
++ PP GG P G P ER H P + + D G
Sbjct: 959 KTGPPGPGGVVGPQGPTGETG------PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 1012
Query: 106 VNGKKRSRGKAKKLKF----GLPGPPGPPG------PQGPPGPIIPPEALLKEFQLLLKG 155
G G A F GLPG G PG PQGPPGP+ P + G
Sbjct: 1013 PQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPG---ERGSAGTAG 1069
Query: 156 AVRQRERAEPEPCTCGPAGPVAASLAP 182
+ R P+ GP GP AP
Sbjct: 1070 PIGLPGRPGPQ----GPPGPAGEKGAP 1092
Score = 33.9 bits (76), Expect = 0.24
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
R G G ++G++ G PGP GP G QGPPGP P
Sbjct: 539 RPGPVGGPGSSGAKGES-----GDPGPQGPRGVQGPPGPTGKP 576
Score = 32.7 bits (73), Expect = 0.53
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 122 GLPGPPGPPGPQGPPGP 138
G PGP G PGPQGP GP
Sbjct: 694 GNPGPQGLPGPQGPIGP 710
Score = 32.3 bits (72), Expect = 0.69
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
GV+G +G G G PGPPG QG PGP
Sbjct: 670 GVDGPPGPKGN-----MGPQGEPGPPGQQGNPGP 698
Score = 32.3 bits (72), Expect = 0.69
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
D G +G+ +GK G+PG PG PG QGP G
Sbjct: 824 DPGPSGQAGEKGK-----LGVPGLPGYPGRQGPKG 853
Score = 32.0 bits (71), Expect = 0.90
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 105 GVNGKKRSRGKAKKLKFGL-----PGPPGPPGPQGPP---GPIIPP 142
G G+K +G+ ++ G+ PGP GP G GPP GP PP
Sbjct: 420 GAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPP 465
Score = 32.0 bits (71), Expect = 0.90
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 8/34 (23%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
G NG+K +RG A G PGP G +GP GP
Sbjct: 862 GANGEKGARGVA--------GKPGPRGQRGPTGP 887
Score = 31.2 bits (69), Expect = 1.5
Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
GP PP G P P G P E+ P A + G +G
Sbjct: 682 GPQGEPGPPGQQGNPGPQGLPGPQGPI---GPPGEKGPQGKPGLAGL-------PGADGP 731
Query: 110 KRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138
GK + + G GPPGP GP G PGP
Sbjct: 732 PGHPGKEGQSGEKGALGPPGPQGPIGYPGP 761
Score = 31.2 bits (69), Expect = 1.5
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 122 GLPGPPGPPGPQGPPGP 138
G GP G PGP+GPPGP
Sbjct: 922 GPQGPVGFPGPKGPPGP 938
Score = 30.4 bits (67), Expect = 2.6
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAK------KLKFGLPGPPGPPGPQGPPGPIIPP 142
P ML R G G S +A+ + + L GPPGP G G PGP+ P
Sbjct: 489 PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 546
Score = 30.4 bits (67), Expect = 2.6
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 10/108 (9%)
Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
G PM RP GP A GE+ P G+ PT + P
Sbjct: 529 GPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPG--- 583
Query: 96 MLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
+G+ G+ ++G + GLPG G G +GP GP PP
Sbjct: 584 ----ADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPP 627
Score = 30.4 bits (67), Expect = 2.6
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 122 GLPGPPGPPGPQGPPGPIIPP 142
G G PGP G GP GPI PP
Sbjct: 691 GQQGNPGPQGLPGPQGPIGPP 711
Score = 30.4 bits (67), Expect = 2.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 122 GLPGPPGPPGPQGPPG 137
G PGP GPPGP G G
Sbjct: 928 GFPGPKGPPGPPGKDG 943
Score = 30.0 bits (66), Expect = 3.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G+ GPPG GP GPPG
Sbjct: 451 GIMGPPGLQGPTGPPG 466
Score = 30.0 bits (66), Expect = 3.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 122 GLPGPPGPPGPQGPPG 137
G GPPG PG +GPPG
Sbjct: 460 GPTGPPGDPGDRGPPG 475
Score = 30.0 bits (66), Expect = 3.4
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPG 137
G G++ +G + F G GPPGPPG G PG
Sbjct: 913 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 946
Score = 29.6 bits (65), Expect = 4.5
Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 24/105 (22%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQL---LLKGAVRQRERAEPEP-------CTCG 171
G PG PG PG G PGP P L+ F+ KG + A+ + G
Sbjct: 472 GPPGRPGLPGADGLPGP--PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRG 529
Query: 172 PAGPVAAS--LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214
P GP+ + PV GD PGP+ PR
Sbjct: 530 PPGPMGLTGRPGPVGGPGSSGAKGESGD----------PGPQGPR 564
Score = 29.6 bits (65), Expect = 4.5
Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 19/114 (16%)
Query: 31 GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPA---GLAVFQEPTAERAH 87
GG A S P+ GP PP G +P + RP G + EP A+
Sbjct: 544 GGPGSSGAKGESGDPGPQ-GPRGVQGPP--GPTGKPGKRGRPGADGGRGMPGEPGAKGDR 600
Query: 88 SVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
D DKG G++ +G PGPPG G +G G I P
Sbjct: 601 GFDGLPGL-----PGDKGHRGERGPQGP--------PGPPGDDGMRGEDGEIGP 641
Score = 29.3 bits (64), Expect = 5.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 122 GLPGPPGPPGPQGPPGP 138
G PG PG G GPPGP
Sbjct: 661 GAPGQPGMAGVDGPPGP 677
Score = 28.9 bits (63), Expect = 7.6
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 104 KGVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162
KG G K RG+ ++ G GP GP G GP G P ++ +L + G R
Sbjct: 789 KGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 848
Query: 163 AEPEPCTCGPAGPVAASLAPVSATAGE 189
P+ T P P A AG+
Sbjct: 849 QGPKGSTGFPGFPGANGEKGARGVAGK 875
Score = 28.9 bits (63), Expect = 7.6
Identities = 30/109 (27%), Positives = 35/109 (32%), Gaps = 19/109 (17%)
Query: 30 TGGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSV 89
TG R A + K P+ G PP GE P P G + P
Sbjct: 885 TGPRGSRGARGPTGKPGPK-GTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 943
Query: 90 DPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
P G G+ +GK GPPGP G GP GP
Sbjct: 944 LP----------GHPGQRGETGFQGKT--------GPPGPGGVVGPQGP 974
Score = 28.9 bits (63), Expect = 7.6
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
Query: 105 GVNGKKRSRGKAKKLKFGLPG------PPGPPGPQGPPG 137
G G++ S G A + GLPG PPGP G +G PG
Sbjct: 1057 GSPGERGSAGTAGPI--GLPGRPGPQGPPGPAGEKGAPG 1093
Score = 28.9 bits (63), Expect = 7.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 122 GLPGPPGPPGPQGPPGP 138
GLPGP GP G +G GP
Sbjct: 1504 GLPGPQGPKGNKGSTGP 1520
>gi|56606142 complement component 1, q subcomponent-like 4 [Homo
sapiens]
Length = 238
Score = 43.1 bits (100), Expect = 4e-04
Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 5/33 (15%)
Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
G G+ RGKA GL GPPGPPGP+GPPG
Sbjct: 55 GAKGEVGRRGKA-----GLRGPPGPPGPRGPPG 82
Score = 33.1 bits (74), Expect = 0.41
Identities = 14/21 (66%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 122 GLPGPPGPPGPQGP-PGPIIP 141
G PG PGPPGP GP PG + P
Sbjct: 82 GEPGRPGPPGPPGPGPGGVAP 102
Score = 28.5 bits (62), Expect = 10.0
Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 34/154 (22%)
Query: 124 PGPPGPPGPQGPPG--PIIPPEALLKEFQLLLKGAVRQRERA--EPEPCTCGPAGPVAAS 179
P P PGP G P P PP A KG V +R +A P GP GP
Sbjct: 34 PHGPRGPGPDGAPASVPPFPPGA---------KGEVGRRGKAGLRGPPGPPGPRGPPGEP 84
Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGV 239
P P PGP A ++ R+ A + R HE G
Sbjct: 85 GRPGP------------------PGPPGPGPGGVAPAAGYVPRIAFYAGLRRP--HE-GY 123
Query: 240 YYLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALA 273
L + G SG++ P+ G Y A
Sbjct: 124 EVLRFDDVVTNVGNAYEAASGKFTCPMPGVYFFA 157
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 43.1 bits (100), Expect = 4e-04
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 101 QSDKGVNGKKRSRGKAKKL----KFGLPGPPGPPGPQGPPGPIIPP 142
+ KG G K SRG K G PGPPGPPG +G PGP PP
Sbjct: 499 KGSKGSQGPKGSRGSPGKPGPQGPSGDPGPPGPPGKEGLPGPQGPP 544
Score = 40.0 bits (92), Expect = 0.003
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 101 QSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
+ D+G G G K +K + G PGPPGP G +GP GP PP
Sbjct: 451 RGDRGSQGPPGPTGNKGQKGEKGEPGPPGPAGERGPIGPAGPP 493
Score = 40.0 bits (92), Expect = 0.003
Identities = 35/111 (31%), Positives = 41/111 (36%), Gaps = 26/111 (23%)
Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162
++G G K S+G K G PG PGP GP G PGP PP
Sbjct: 495 ERGGKGSKGSQGP--KGSRGSPGKPGPQGPSGDPGPPGPP-------------------G 533
Query: 163 AEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
E P GP GP + T GE + L P PGP+ P
Sbjct: 534 KEGLP---GPQGP--PGFQGLQGTVGEPGVPGPRGLPGLPGVPGMPGPKGP 579
Score = 38.9 bits (89), Expect = 0.007
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 122 GLPGPPGPPGPQGPPGPIIPPEALL 146
GLPG PG PGP+GPPGP P A++
Sbjct: 566 GLPGVPGMPGPKGPPGPPGPSGAVV 590
Score = 38.9 bits (89), Expect = 0.007
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 122 GLPGPPGPPGPQGPPGPIIP 141
G+PGP GPPGP GP G ++P
Sbjct: 572 GMPGPKGPPGPPGPSGAVVP 591
Score = 34.3 bits (77), Expect = 0.18
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 123 LPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEP-EPCTCGPAGPVAASLA 181
L GPPGP GP+G G PP + Q KG E+ EP P G GP+ +
Sbjct: 441 LQGPPGPRGPRGDRGSQGPPGPTGNKGQ---KG-----EKGEPGPPGPAGERGPIGPA-G 491
Query: 182 PVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
P G+ G +P PGP+ P
Sbjct: 492 PPGERGGKGSKGSQGP-KGSRGSPGKPGPQGP 522
Score = 29.3 bits (64), Expect = 5.8
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 122 GLPGP---PGPPGPQGPPGPIIPP 142
G+PGP PG PG G PGP PP
Sbjct: 557 GVPGPRGLPGLPGVPGMPGPKGPP 580
Score = 29.3 bits (64), Expect = 5.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 122 GLPGPPGPPGPQGPPGPI 139
G GPPGPPGP G P+
Sbjct: 575 GPKGPPGPPGPSGAVVPL 592
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,793,095
Number of Sequences: 37866
Number of extensions: 1166005
Number of successful extensions: 23745
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 339
Number of HSP's that attempted gapping in prelim test: 8511
Number of HSP's gapped (non-prelim): 7602
length of query: 367
length of database: 18,247,518
effective HSP length: 104
effective length of query: 263
effective length of database: 14,309,454
effective search space: 3763386402
effective search space used: 3763386402
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.