Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 15812196
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens]
(580 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens] 1197 0.0
gi|11024696 F-box only protein 24 isoform 2 [Homo sapiens] 607 e-173
gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens] 50 4e-06
gi|4557445 regulator of chromosome condensation and BTB domain c... 50 6e-06
gi|209969703 regulator of chromosome condensation 2 [Homo sapiens] 47 5e-05
gi|29789090 regulator of chromosome condensation 2 [Homo sapiens] 47 5e-05
gi|57242759 regulator of chromosome condensation (RCC1) and BTB ... 45 2e-04
gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [H... 44 5e-04
gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [H... 44 5e-04
gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [H... 44 5e-04
gi|126116565 MYC binding protein 2 [Homo sapiens] 42 0.001
gi|42558258 F-box protein 33 [Homo sapiens] 42 0.001
gi|83035136 F-box protein 31 [Homo sapiens] 42 0.002
gi|37620181 hect domain and RLD 4 isoform b [Homo sapiens] 40 0.006
gi|63025188 hect domain and RLD 4 isoform a [Homo sapiens] 40 0.006
gi|126032348 hect domain and RLD 2 [Homo sapiens] 39 0.010
gi|114796646 regulator of chromosome condensation 1 isoform b [H... 39 0.010
gi|114796644 regulator of chromosome condensation 1 isoform a [H... 39 0.010
gi|4502801 regulator of chromosome condensation 1 isoform c [Hom... 39 0.010
gi|114796642 regulator of chromosome condensation 1 [Homo sapiens] 39 0.010
gi|114796640 regulator of chromosome condensation 1 [Homo sapiens] 39 0.010
gi|114796648 regulator of chromosome condensation 1 [Homo sapiens] 39 0.010
gi|4506581 retinitis pigmentosa GTPase regulator isoform A [Homo... 39 0.017
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 39 0.017
gi|13540582 Williams-Beuren syndrome chromosome region 16 [Homo ... 39 0.017
gi|7657152 hect domain and RLD 3 [Homo sapiens] 38 0.029
gi|239750800 PREDICTED: hypothetical protein XP_002347563 [Homo ... 37 0.038
gi|30039692 NIMA-related kinase 8 [Homo sapiens] 36 0.085
gi|63054860 RCC1 domain containing 1 [Homo sapiens] 36 0.11
gi|63054858 RCC1 domain containing 1 [Homo sapiens] 36 0.11
>gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens]
Length = 580
Score = 1197 bits (3096), Expect = 0.0
Identities = 580/580 (100%), Positives = 580/580 (100%)
Query: 1 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV 60
MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV
Sbjct: 1 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV 60
Query: 61 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR 120
ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR
Sbjct: 61 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR 120
Query: 121 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL 180
RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL
Sbjct: 121 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL 180
Query: 181 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF 240
CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF
Sbjct: 181 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF 240
Query: 241 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH 300
HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH
Sbjct: 241 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH 300
Query: 301 LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL 360
LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL
Sbjct: 301 LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL 360
Query: 361 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL 420
FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL
Sbjct: 361 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL 420
Query: 421 VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH 480
VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH
Sbjct: 421 VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH 480
Query: 481 DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK 540
DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK
Sbjct: 481 DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK 540
Query: 541 EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET 580
EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
Sbjct: 541 EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET 580
>gi|11024696 F-box only protein 24 isoform 2 [Homo sapiens]
Length = 318
Score = 607 bits (1564), Expect = e-173
Identities = 303/318 (95%), Positives = 303/318 (95%), Gaps = 14/318 (4%)
Query: 1 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV 60
MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV
Sbjct: 1 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV 60
Query: 61 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR 120
ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQ TKGLYFQAFGGR
Sbjct: 61 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQD--------------TKGLYFQAFGGR 106
Query: 121 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL 180
RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL
Sbjct: 107 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL 166
Query: 181 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF 240
CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF
Sbjct: 167 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF 226
Query: 241 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH 300
HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH
Sbjct: 227 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH 286
Query: 301 LRVACMTSNQSSTLYVTD 318
LRVACMTSNQSSTLYVTD
Sbjct: 287 LRVACMTSNQSSTLYVTD 304
>gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]
Length = 4861
Score = 50.4 bits (119), Expect = 4e-06
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 288 QLALRKVSHYLPHLRVACMTSNQSS---TLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDP 344
Q L+K++ + PH + ++S++ S TL T +G V+ G Y G L +
Sbjct: 443 QSTLKKLT-FEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS--WGDGDY----GKLGHGNS 495
Query: 345 LDQQMPLALSLP--AKILFC-ALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPT 401
Q+ P + P K++ C + GY H V E G ++ G +G+LG GD R PT
Sbjct: 496 STQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNIPT 555
Query: 402 QVCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRL 443
V + + CG +H++ LS+ + + G G G+L
Sbjct: 556 LVKDISNVGEVSCGSSHTIALSKD---GRTVWSFGGGDNGKL 594
Score = 43.1 bits (100), Expect = 7e-04
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 358 KILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQ--RPITLWCG 415
+++ + G+ H +V G++F GN YG+LG G+ ++ P +V L+ + + CG
Sbjct: 4135 EVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACG 4194
Query: 416 LNHSLVLS 423
LNH+L +S
Sbjct: 4195 LNHTLAVS 4202
Score = 37.4 bits (85), Expect = 0.038
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 368 HLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQ--RPITLWCGLNHSLVLSQS 425
H + E G +F G+ YG+LG G+ + P Q+ LQ + + CG HS V++
Sbjct: 4093 HSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSD 4152
Query: 426 SEFSKELLGCGCGAGGRL 443
+L G G GRL
Sbjct: 4153 G----KLFTFGNGDYGRL 4166
>gi|4557445 regulator of chromosome condensation and BTB domain
containing protein 2 [Homo sapiens]
Length = 551
Score = 50.1 bits (118), Expect = 6e-06
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
Query: 243 SMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLR 302
+++ KQ++ V + +L+L T +G++++ N + S Q R+V+ L +
Sbjct: 148 NLSNKQVIEVACGSYHSLVL-TSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKV 206
Query: 303 VACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMP--LALSLPAKIL 360
V + Q + V D G VY + G L + +Q P +A ++
Sbjct: 207 VVTIACGQMCCMAVVDTGEVYVWGYNGN------GQLGLGNSGNQPTPCRVAALQGIRVQ 260
Query: 361 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQV 403
A GY H ++ + G+++ G N YGQLGTG+K ++ PT V
Sbjct: 261 RVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPV 303
Score = 36.2 bits (82), Expect = 0.085
Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 15/216 (6%)
Query: 243 SMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLR 302
S+ K+I + + ++L T EG++++ N + L +S L + +
Sbjct: 94 SLNGKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNKQ 153
Query: 303 VACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALS--LPAKIL 360
V + +L +T G V+ + G + + ++Q +P ++ L K++
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNS------GQVGSGSTVNQPIPRRVTGCLQNKVV 207
Query: 361 FC-ALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQ--RPITLWCGLN 417
A G V + G +++ G N GQLG G+ ++ P +V LQ R + CG
Sbjct: 208 VTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYA 267
Query: 418 HSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASF 453
H+LVL+ ++ G + G+L K + S+
Sbjct: 268 HTLVLTDEG----QVYAWGANSYGQLGTGNKSNQSY 299
>gi|209969703 regulator of chromosome condensation 2 [Homo sapiens]
Length = 522
Score = 47.0 bits (110), Expect = 5e-05
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 359 ILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDR-GEPTQVCYLQRPIT-LWCGL 416
I+ A G NH + E G +F G N+ GQLG G++ D P Q+ Y +PIT + CG
Sbjct: 204 IVSAACGRNHTLALTETGSVFAFGENKMGQLGLGNQTDAVPSPAQIMYNGQPITKMACGA 263
Query: 417 NHSLVLSQSSEFSKELLGCGCGAGGRL 443
S+++ + L GC G+L
Sbjct: 264 EFSMIM----DCKGNLYSFGCPEYGQL 286
Score = 32.7 bits (73), Expect = 0.94
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 368 HLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRP--ITLWCGLNHSLVLSQS 425
H L+ G+++ G N GQLG GD P + L ++ CG NH+L L+++
Sbjct: 161 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEGLSHEVIVSAACGRNHTLALTET 220
Score = 32.0 bits (71), Expect = 1.6
Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 51/217 (23%)
Query: 261 LLLTEEGKIYSLVVNET-QLDQPRSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQ 319
LL+T EGK++S NE QL T ++ ++ L H + ++ TL +T+
Sbjct: 163 LLITTEGKLWSWGRNEKGQLG--HGDTKRVEAPRLIEGLSHEVIVSAACGRNHTLALTET 220
Query: 320 GGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKILF-------CALGYNHLGLV 372
G V+ + G L + D A+ PA+I++ A G ++
Sbjct: 221 GSVF------AFGENKMGQLGLGNQTD-----AVPSPAQIMYNGQPITKMACGAEFSMIM 269
Query: 373 DEFGRIFMQGNNRYGQLG---TGDKMDRGEPTQV-CYL-QRPITLW-------------- 413
D G ++ G YGQLG G + R + + C L R + ++
Sbjct: 270 DCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQILPVPN 329
Query: 414 -------CGLNHSLVLSQSSEFSKELLGCGCGAGGRL 443
CG NH+LVL + K + G G GRL
Sbjct: 330 VVVRDVACGANHTLVL----DSQKRVFSWGFGGYGRL 362
>gi|29789090 regulator of chromosome condensation 2 [Homo sapiens]
Length = 522
Score = 47.0 bits (110), Expect = 5e-05
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 359 ILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDR-GEPTQVCYLQRPIT-LWCGL 416
I+ A G NH + E G +F G N+ GQLG G++ D P Q+ Y +PIT + CG
Sbjct: 204 IVSAACGRNHTLALTETGSVFAFGENKMGQLGLGNQTDAVPSPAQIMYNGQPITKMACGA 263
Query: 417 NHSLVLSQSSEFSKELLGCGCGAGGRL 443
S+++ + L GC G+L
Sbjct: 264 EFSMIM----DCKGNLYSFGCPEYGQL 286
Score = 32.7 bits (73), Expect = 0.94
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 368 HLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRP--ITLWCGLNHSLVLSQS 425
H L+ G+++ G N GQLG GD P + L ++ CG NH+L L+++
Sbjct: 161 HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEGLSHEVIVSAACGRNHTLALTET 220
Score = 32.0 bits (71), Expect = 1.6
Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 51/217 (23%)
Query: 261 LLLTEEGKIYSLVVNET-QLDQPRSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQ 319
LL+T EGK++S NE QL T ++ ++ L H + ++ TL +T+
Sbjct: 163 LLITTEGKLWSWGRNEKGQLG--HGDTKRVEAPRLIEGLSHEVIVSAACGRNHTLALTET 220
Query: 320 GGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKILF-------CALGYNHLGLV 372
G V+ + G L + D A+ PA+I++ A G ++
Sbjct: 221 GSVF------AFGENKMGQLGLGNQTD-----AVPSPAQIMYNGQPITKMACGAEFSMIM 269
Query: 373 DEFGRIFMQGNNRYGQLG---TGDKMDRGEPTQV-CYL-QRPITLW-------------- 413
D G ++ G YGQLG G + R + + C L R + ++
Sbjct: 270 DCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQILPVPN 329
Query: 414 -------CGLNHSLVLSQSSEFSKELLGCGCGAGGRL 443
CG NH+LVL + K + G G GRL
Sbjct: 330 VVVRDVACGANHTLVL----DSQKRVFSWGFGGYGRL 362
>gi|57242759 regulator of chromosome condensation (RCC1) and BTB
(POZ) domain containing protein 1 [Homo sapiens]
Length = 531
Score = 45.1 bits (105), Expect = 2e-04
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 7/162 (4%)
Query: 243 SMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLR 302
++ KQ+V V + ++ L + G++++ N S Q RKV++ L R
Sbjct: 124 NLLIKQVVEVACGSHHSMALAAD-GEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKR 182
Query: 303 VACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKILFC 362
V + Q+S++ V D G VY + L P+ ++ S+ + C
Sbjct: 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPV--RVAALHSVCVNQIVC 240
Query: 363 ALGYNH-LGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQV 403
GY H L L DE G ++ G N YGQLGTG+K + P +
Sbjct: 241 --GYAHTLALTDE-GLLYAWGANTYGQLGTGNKNNLLSPAHI 279
Score = 43.9 bits (102), Expect = 4e-04
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 301 LRVACMTSNQSS-TLYVTDQGGVY-FEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAK 358
+R AC+ +S LYVTD V+ F ++ Y + GT D +P L
Sbjct: 21 IRKACVFGTSASEALYVTDNDEVFVFGLN----YSNCLGT---GDNQSTLVPKKLEGLCG 73
Query: 359 ILFCALGYN---HLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVC---YLQRPITL 412
+L Y H+ L E G ++ G+N Y QLG G P QVC +++ + +
Sbjct: 74 KKIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLIKQVVEV 133
Query: 413 WCGLNHSLVLSQSSE-FSKELLGCGCGAGGRLPGWP 447
CG +HS+ L+ E F+ CG G P
Sbjct: 134 ACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQP 169
>gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [Homo
sapiens]
Length = 589
Score = 43.5 bits (101), Expect = 5e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 39 IQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICR 84
I L P EL +++SFL +DL+ QTCRY+ + + +WR C+
Sbjct: 163 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 208
>gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [Homo
sapiens]
Length = 707
Score = 43.5 bits (101), Expect = 5e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 39 IQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICR 84
I L P EL +++SFL +DL+ QTCRY+ + + +WR C+
Sbjct: 281 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 326
>gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [Homo
sapiens]
Length = 627
Score = 43.5 bits (101), Expect = 5e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 39 IQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICR 84
I L P EL +++SFL +DL+ QTCRY+ + + +WR C+
Sbjct: 201 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 246
>gi|126116565 MYC binding protein 2 [Homo sapiens]
Length = 4640
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 365 GYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPIT-LWCGLNHSLVLS 423
G++H ++ E G ++ G ++GQLG GD RG PT V L P T + G NH+ VL
Sbjct: 910 GFHHSVVLMENGDVYTFGYGQHGQLGHGDVNSRGCPTLVQALPGPSTQVTAGSNHTAVLL 969
Query: 424 QSSE------FSKELLG 434
+ FSK LG
Sbjct: 970 MDGQVFTFGSFSKGQLG 986
>gi|42558258 F-box protein 33 [Homo sapiens]
Length = 555
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 13 RVKRSCPSCGSELGVEEKRGK----GNPISIQLFPPELVEHIISFLPVRDLVALGQTCRY 68
RV R P GS +RG+ G P EL+ HI SFLP D + +C +
Sbjct: 43 RVLRGRPGAGSR-----RRGRMALCGQAAGAASLPSELIVHIFSFLPAPDRLRASASCSH 97
Query: 69 FHEVCDGEGVW--RRICRRLSPRLQ 91
+ E +W RIC R+SP Q
Sbjct: 98 WRECLFYPALWPQLRICLRVSPAEQ 122
>gi|83035136 F-box protein 31 [Homo sapiens]
Length = 539
Score = 42.0 bits (97), Expect = 0.002
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 38 SIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICR 84
S+ PPEL+ I + LP DL +L Q C F + + +WRR CR
Sbjct: 66 SLLELPPELLVEIFASLPGTDLPSLAQVCTKFRRILHTDTIWRRRCR 112
>gi|37620181 hect domain and RLD 4 isoform b [Homo sapiens]
Length = 1049
Score = 40.0 bits (92), Expect = 0.006
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 16/150 (10%)
Query: 298 LPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMP-LALSLP 356
+P ++VA + + + +T G ++ G R+ FG L D D+ +P L SL
Sbjct: 190 IPFMQVA---AGGAHSFVLTLSGAIF------GWGRNKFGQLGLNDENDRYVPNLLKSLR 240
Query: 357 A-KILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPIT--LW 413
+ KI++ G +H + + G +F G YGQLG P +V L I +
Sbjct: 241 SQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTEIA 300
Query: 414 CGLNHSLVLSQSSEFSKELLGCGCGAGGRL 443
CG H+ S S + G G G+L
Sbjct: 301 CGRQHTSAFVPS---SGRIYSFGLGGNGQL 327
Score = 32.0 bits (71), Expect = 1.6
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 16/140 (11%)
Query: 258 RALLLLTEEGKIYSLVVNET-QLDQPRSYTVQLALRKVSHYLPHL---RVACMTSNQSST 313
R + + ++G +Y+ N+ QL +S RK + L + ++ ++ T
Sbjct: 44 RHTVFVLDDGTVYTCGCNDLGQLGHEKS-------RKKPEQVVALDAQNIVAVSCGEAHT 96
Query: 314 LYVTDQGGVYFEVHTPGVYRD-LFGTLQAFDPLDQQMPLALSLPAKILFCALGYNHLGLV 372
L + D+G VY G+ D G + + + + + +I+ A GY H +
Sbjct: 97 LALNDKGQVY----AWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLAL 152
Query: 373 DEFGRIFMQGNNRYGQLGTG 392
+ +F G N+YGQLG G
Sbjct: 153 SKASEVFCWGQNKYGQLGLG 172
Score = 30.8 bits (68), Expect = 3.6
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 365 GYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYL--QRPITLWCGLNHSLVL 422
G H V + G ++ G N GQLG + R +P QV L Q + + CG H+L L
Sbjct: 42 GLRHTVFVLDDGTVYTCGCNDLGQLG--HEKSRKKPEQVVALDAQNIVAVSCGEAHTLAL 99
Query: 423 SQSSE 427
+ +
Sbjct: 100 NDKGQ 104
>gi|63025188 hect domain and RLD 4 isoform a [Homo sapiens]
Length = 1057
Score = 40.0 bits (92), Expect = 0.006
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 16/150 (10%)
Query: 298 LPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMP-LALSLP 356
+P ++VA + + + +T G ++ G R+ FG L D D+ +P L SL
Sbjct: 190 IPFMQVA---AGGAHSFVLTLSGAIF------GWGRNKFGQLGLNDENDRYVPNLLKSLR 240
Query: 357 A-KILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPIT--LW 413
+ KI++ G +H + + G +F G YGQLG P +V L I +
Sbjct: 241 SQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTEIA 300
Query: 414 CGLNHSLVLSQSSEFSKELLGCGCGAGGRL 443
CG H+ S S + G G G+L
Sbjct: 301 CGRQHTSAFVPS---SGRIYSFGLGGNGQL 327
Score = 32.0 bits (71), Expect = 1.6
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 16/140 (11%)
Query: 258 RALLLLTEEGKIYSLVVNET-QLDQPRSYTVQLALRKVSHYLPHL---RVACMTSNQSST 313
R + + ++G +Y+ N+ QL +S RK + L + ++ ++ T
Sbjct: 44 RHTVFVLDDGTVYTCGCNDLGQLGHEKS-------RKKPEQVVALDAQNIVAVSCGEAHT 96
Query: 314 LYVTDQGGVYFEVHTPGVYRD-LFGTLQAFDPLDQQMPLALSLPAKILFCALGYNHLGLV 372
L + D+G VY G+ D G + + + + + +I+ A GY H +
Sbjct: 97 LALNDKGQVY----AWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLAL 152
Query: 373 DEFGRIFMQGNNRYGQLGTG 392
+ +F G N+YGQLG G
Sbjct: 153 SKASEVFCWGQNKYGQLGLG 172
Score = 30.8 bits (68), Expect = 3.6
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 365 GYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYL--QRPITLWCGLNHSLVL 422
G H V + G ++ G N GQLG + R +P QV L Q + + CG H+L L
Sbjct: 42 GLRHTVFVLDDGTVYTCGCNDLGQLG--HEKSRKKPEQVVALDAQNIVAVSCGEAHTLAL 99
Query: 423 SQSSE 427
+ +
Sbjct: 100 NDKGQ 104
>gi|126032348 hect domain and RLD 2 [Homo sapiens]
Length = 4834
Score = 39.3 bits (90), Expect = 0.010
Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 18/221 (8%)
Query: 245 TFKQIVLVGQETQRALLLLTEEGKIYSL---VVNETQLDQPRSYTVQLALRKVSHYLPHL 301
T + + L+G E + L +T +GK+Y+ + S + L + H +
Sbjct: 3984 TLRPVQLIGGE--QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVF--I 4039
Query: 302 RVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKILF 361
+ + S L ++ +G EV++ G D P D+ + +++
Sbjct: 4040 KKVAVNSGGKHCLALSSEG----EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVD 4095
Query: 362 CALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQ--RPITLWCGLNHS 419
A G H V G ++ G RYG+LG D D+ +P V LQ R + + CG +
Sbjct: 4096 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDA 4155
Query: 420 LVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKV 460
L + + + G G G+L +G + K+ +K+
Sbjct: 4156 QTLCLTDD--DTVWSWGDGDYGKL---GRGGSDGCKVPMKI 4191
Score = 36.2 bits (82), Expect = 0.085
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 358 KILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYL--QRPITLWCG 415
KI+ A+G H V + G+++ G+N +GQ G G +PT V L Q+ + CG
Sbjct: 3258 KIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQGNGTTTVNRKPTLVQGLEGQKITRVACG 3317
Query: 416 LNHSL 420
+HS+
Sbjct: 3318 SSHSV 3322
Score = 35.0 bits (79), Expect = 0.19
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 232 GQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYS----------LVVNETQLDQ 281
G ++ +F +++ +V V + ++L +T EGK+Y+ L ++ +
Sbjct: 2977 GSKIKVPSFSETLSALNVVQVAGGS-KSLFAVTVEGKVYACGEATNGRLGLGISSGTVPI 3035
Query: 282 PRSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQA 341
PR T +S Y+ +VA + + +T D +V + G D G L
Sbjct: 3036 PRQITA------LSSYVVK-KVAVHSGGRHATALTVDG-----KVFSWGEGDD--GKLGH 3081
Query: 342 FDPLDQQMPLALSL--PAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGE 399
F ++ P + +I A G +H + G ++ G YG+LG GD + +
Sbjct: 3082 FSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLK 3141
Query: 400 PTQVCYL--QRPITLWCGLNHSLVLSQSSE 427
P V L R I + CG + L+ + E
Sbjct: 3142 PKMVKVLLGHRVIQVACGSRDAQTLALTDE 3171
Score = 32.7 bits (73), Expect = 0.94
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 358 KILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQ--RPITLWCG 415
K++ A G H E G ++ G+N GQLG G P V LQ + + CG
Sbjct: 4250 KVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACG 4309
Query: 416 LNHSLVLSQSSEFS 429
H+L S S S
Sbjct: 4310 SAHTLAWSTSKPAS 4323
>gi|114796646 regulator of chromosome condensation 1 isoform b [Homo
sapiens]
Length = 438
Score = 39.3 bits (90), Expect = 0.010
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 302 RVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQM-PLALSLPAKIL 360
+V +++ S T +TD G V+ G +RD G + +P+ + M P+ + L ++
Sbjct: 137 KVVQVSAGDSHTAALTDDGRVFLW----GSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVV 192
Query: 361 FCALGYNHLGLVDEFGRIFMQGNNRYGQLG 390
A G +HL ++ G ++ G GQLG
Sbjct: 193 KVASGNDHLVMLTADGDLYTLGCGEQGQLG 222
>gi|114796644 regulator of chromosome condensation 1 isoform a [Homo
sapiens]
Length = 452
Score = 39.3 bits (90), Expect = 0.010
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 302 RVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQM-PLALSLPAKIL 360
+V +++ S T +TD G V+ G +RD G + +P+ + M P+ + L ++
Sbjct: 151 KVVQVSAGDSHTAALTDDGRVFLW----GSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVV 206
Query: 361 FCALGYNHLGLVDEFGRIFMQGNNRYGQLG 390
A G +HL ++ G ++ G GQLG
Sbjct: 207 KVASGNDHLVMLTADGDLYTLGCGEQGQLG 236
>gi|4502801 regulator of chromosome condensation 1 isoform c [Homo
sapiens]
Length = 421
Score = 39.3 bits (90), Expect = 0.010
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 302 RVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQM-PLALSLPAKIL 360
+V +++ S T +TD G V+ G +RD G + +P+ + M P+ + L ++
Sbjct: 120 KVVQVSAGDSHTAALTDDGRVFLW----GSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVV 175
Query: 361 FCALGYNHLGLVDEFGRIFMQGNNRYGQLG 390
A G +HL ++ G ++ G GQLG
Sbjct: 176 KVASGNDHLVMLTADGDLYTLGCGEQGQLG 205
>gi|114796642 regulator of chromosome condensation 1 [Homo sapiens]
Length = 421
Score = 39.3 bits (90), Expect = 0.010
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 302 RVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQM-PLALSLPAKIL 360
+V +++ S T +TD G V+ G +RD G + +P+ + M P+ + L ++
Sbjct: 120 KVVQVSAGDSHTAALTDDGRVFLW----GSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVV 175
Query: 361 FCALGYNHLGLVDEFGRIFMQGNNRYGQLG 390
A G +HL ++ G ++ G GQLG
Sbjct: 176 KVASGNDHLVMLTADGDLYTLGCGEQGQLG 205
>gi|114796640 regulator of chromosome condensation 1 [Homo sapiens]
Length = 421
Score = 39.3 bits (90), Expect = 0.010
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 302 RVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQM-PLALSLPAKIL 360
+V +++ S T +TD G V+ G +RD G + +P+ + M P+ + L ++
Sbjct: 120 KVVQVSAGDSHTAALTDDGRVFLW----GSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVV 175
Query: 361 FCALGYNHLGLVDEFGRIFMQGNNRYGQLG 390
A G +HL ++ G ++ G GQLG
Sbjct: 176 KVASGNDHLVMLTADGDLYTLGCGEQGQLG 205
>gi|114796648 regulator of chromosome condensation 1 [Homo sapiens]
Length = 421
Score = 39.3 bits (90), Expect = 0.010
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 302 RVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQM-PLALSLPAKIL 360
+V +++ S T +TD G V+ G +RD G + +P+ + M P+ + L ++
Sbjct: 120 KVVQVSAGDSHTAALTDDGRVFLW----GSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVV 175
Query: 361 FCALGYNHLGLVDEFGRIFMQGNNRYGQLG 390
A G +HL ++ G ++ G GQLG
Sbjct: 176 KVASGNDHLVMLTADGDLYTLGCGEQGQLG 205
>gi|4506581 retinitis pigmentosa GTPase regulator isoform A [Homo
sapiens]
Length = 815
Score = 38.5 bits (88), Expect = 0.017
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 365 GYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYL--QRPITLWCGLNHSLVL 422
G H +V +++M G+N +GQLG G K +PT V L ++ CG NH+LV
Sbjct: 43 GDEHSAVVTGNNKLYMFGSNNWGQLGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVS 102
Query: 423 SQ 424
++
Sbjct: 103 TE 104
Score = 37.0 bits (84), Expect = 0.050
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 356 PAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDR 397
P K+ A G NH + E G ++ G N GQLG GD +R
Sbjct: 86 PEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEER 127
Score = 35.0 bits (79), Expect = 0.19
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 358 KILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPIT-LWCGL 416
KI + G N + E GR+FM G+N GQ+G + + P QV + +P++ + CG
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVT-IGKPVSWISCGY 199
Query: 417 NHSLVLSQSSE 427
HS ++ E
Sbjct: 200 YHSAFVTTDGE 210
Score = 31.6 bits (70), Expect = 2.1
Identities = 18/84 (21%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 349 MPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKM--DRGEPTQVCYL 406
+P +++ + + + GY H V G +++ G G+LG +++ + P V +
Sbjct: 182 VPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEI 241
Query: 407 -QRPITLWCGLNHSLVLSQSSEFS 429
++ I + CG H++VL++++ ++
Sbjct: 242 PEKVIQVACGGEHTVVLTENAVYT 265
Score = 31.2 bits (69), Expect = 2.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 359 ILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTG 392
I + + G NH L+ + G ++ G+ R+G+LG G
Sbjct: 297 ISYISCGENHTALITDIGLMYTFGDGRHGKLGLG 330
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 38.5 bits (88), Expect = 0.017
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 365 GYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYL--QRPITLWCGLNHSLVL 422
G H +V +++M G+N +GQLG G K +PT V L ++ CG NH+LV
Sbjct: 43 GDEHSAVVTGNNKLYMFGSNNWGQLGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVS 102
Query: 423 SQ 424
++
Sbjct: 103 TE 104
Score = 37.0 bits (84), Expect = 0.050
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 356 PAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDR 397
P K+ A G NH + E G ++ G N GQLG GD +R
Sbjct: 86 PEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEER 127
Score = 35.0 bits (79), Expect = 0.19
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 358 KILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPIT-LWCGL 416
KI + G N + E GR+FM G+N GQ+G + + P QV + +P++ + CG
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVT-IGKPVSWISCGY 199
Query: 417 NHSLVLSQSSE 427
HS ++ E
Sbjct: 200 YHSAFVTTDGE 210
Score = 31.6 bits (70), Expect = 2.1
Identities = 18/84 (21%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 349 MPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKM--DRGEPTQVCYL 406
+P +++ + + + GY H V G +++ G G+LG +++ + P V +
Sbjct: 182 VPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEI 241
Query: 407 -QRPITLWCGLNHSLVLSQSSEFS 429
++ I + CG H++VL++++ ++
Sbjct: 242 PEKVIQVACGGEHTVVLTENAVYT 265
Score = 31.2 bits (69), Expect = 2.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 359 ILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTG 392
I + + G NH L+ + G ++ G+ R+G+LG G
Sbjct: 297 ISYISCGENHTALITDIGLMYTFGDGRHGKLGLG 330
>gi|13540582 Williams-Beuren syndrome chromosome region 16 [Homo
sapiens]
Length = 464
Score = 38.5 bits (88), Expect = 0.017
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 365 GYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSLVLSQ 424
G +H + G +F+ G N G LG G D+ P +V P+ + CG++H + L++
Sbjct: 402 GLSHFAALTNKGELFVWGKNIRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAK 461
Query: 425 S 425
S
Sbjct: 462 S 462
Score = 38.1 bits (87), Expect = 0.022
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 343 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLG--TGDKMDRGEP 400
+P +PL ++L + G H ++ + +F GNN YGQ G + E
Sbjct: 160 EPSPVSLPLDRPQETRVLQVSCGRAHSLVLTDREGVFSMGNNSYGQCGRKVVENEIYSES 219
Query: 401 TQVCYLQ----RPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGR 442
+V +Q + + + CG +HSL L+ E+ CG GA G+
Sbjct: 220 HRVHRMQDFDGQVVQVACGQDHSLFLTDKG----EVYSCGWGADGQ 261
>gi|7657152 hect domain and RLD 3 [Homo sapiens]
Length = 1050
Score = 37.7 bits (86), Expect = 0.029
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 363 ALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSLVL 422
A G NH + E G ++ G N GQLG + ++ E Q I + CG +HSL L
Sbjct: 40 ACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLAL 99
Query: 423 SQSSEFSKELLGCGCGAGGRL 443
S +L G G+ G+L
Sbjct: 100 SDRG----QLFSWGAGSDGQL 116
>gi|239750800 PREDICTED: hypothetical protein XP_002347563 [Homo
sapiens]
Length = 596
Score = 37.4 bits (85), Expect = 0.038
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 358 KILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYL--QRPITLWCG 415
KI+ A+G H V + G+++ G+N +GQ G G +PT V L Q+ + + CG
Sbjct: 109 KIVHVAVGAQHCLAVMDSGQVYAWGDNDHGQQGNGTTTVNRKPTLVQGLEGQKIMCVACG 168
Query: 416 LNHSL 420
+HS+
Sbjct: 169 SSHSV 173
>gi|30039692 NIMA-related kinase 8 [Homo sapiens]
Length = 692
Score = 36.2 bits (82), Expect = 0.085
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 338 TLQAFDPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDR 397
TL PLDQ+ L++ L G H V G + G+N++GQLGT +
Sbjct: 551 TLLGSAPLDQEPLLSIDL---------GTAHSAAVTASGDCYTFGSNQHGQLGTNTRRGS 601
Query: 398 GEPTQVCYLQ--RPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRL 443
P +V L+ + + CG ++ + S E+ G GA GRL
Sbjct: 602 RAPCKVQGLEGIKMAMVACGDAFTVAIGAES----EVYSWGKGARGRL 645
>gi|63054860 RCC1 domain containing 1 [Homo sapiens]
Length = 376
Score = 35.8 bits (81), Expect = 0.11
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 350 PLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRP 409
PLA L A+ L LG H L+D G++F G R+GQLG G EP + LQ
Sbjct: 153 PLAPELRARQL--ELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQGL 210
Query: 410 I--TLWCGLNHSLVLSQSSE 427
+ + G HS+ +S++ +
Sbjct: 211 VMAEVAAGGWHSVCVSETGD 230
Score = 32.3 bits (72), Expect = 1.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 347 QQMPLALSLP--AKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVC 404
Q P L LP + + + G H +V G ++ G +YGQLG D P +V
Sbjct: 288 QPFPALLDLPMGSDAVKASCGSRHTAVVTRTGELYTWGWGKYGQLGHEDTTSLDRPRRVE 347
Query: 405 Y 405
Y
Sbjct: 348 Y 348
>gi|63054858 RCC1 domain containing 1 [Homo sapiens]
Length = 376
Score = 35.8 bits (81), Expect = 0.11
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 350 PLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRP 409
PLA L A+ L LG H L+D G++F G R+GQLG G EP + LQ
Sbjct: 153 PLAPELRARQL--ELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQGL 210
Query: 410 I--TLWCGLNHSLVLSQSSE 427
+ + G HS+ +S++ +
Sbjct: 211 VMAEVAAGGWHSVCVSETGD 230
Score = 32.3 bits (72), Expect = 1.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 347 QQMPLALSLP--AKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVC 404
Q P L LP + + + G H +V G ++ G +YGQLG D P +V
Sbjct: 288 QPFPALLDLPMGSDAVKASCGSRHTAVVTRTGELYTWGWGKYGQLGHEDTTSLDRPRRVE 347
Query: 405 Y 405
Y
Sbjct: 348 Y 348
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,150,759
Number of Sequences: 37866
Number of extensions: 1131687
Number of successful extensions: 2993
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2818
Number of HSP's gapped (non-prelim): 200
length of query: 580
length of database: 18,247,518
effective HSP length: 108
effective length of query: 472
effective length of database: 14,157,990
effective search space: 6682571280
effective search space used: 6682571280
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.