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Search of human proteins with 155030238
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|155030238 protein phosphatase 1, regulatory (inhibitor)
subunit 1A [Homo sapiens]
(171 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|155030238 protein phosphatase 1, regulatory (inhibitor) subun... 347 4e-96
gi|122937386 protein phosphatase 1, regulatory (inhibitor) subun... 87 5e-18
gi|21735492 protein phosphatase 1, regulatory (inhibitor) subuni... 63 1e-10
gi|139394648 DNA polymerase theta [Homo sapiens] 36 0.018
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 35 0.041
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 35 0.041
gi|38372931 brevican isoform 2 [Homo sapiens] 35 0.041
gi|38372935 brevican isoform 1 [Homo sapiens] 35 0.041
gi|56118310 nuclear casein kinase and cyclin-dependent kinase su... 33 0.092
gi|4885243 FOS-like antigen 1 [Homo sapiens] 33 0.16
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 33 0.16
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 33 0.16
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 33 0.16
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 32 0.20
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 32 0.20
gi|146219832 myosin light chain kinase 3 [Homo sapiens] 32 0.20
gi|238859557 regulatory factor X1 [Homo sapiens] 32 0.27
gi|157739942 gemin 5 [Homo sapiens] 32 0.27
gi|151301154 mucin 6, gastric [Homo sapiens] 32 0.27
gi|66529005 ATP-binding cassette, sub-family C, member 5 isoform... 32 0.35
gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens] 32 0.35
gi|193083163 roundabout, axon guidance receptor, homolog 2 isofo... 31 0.46
gi|61888896 roundabout, axon guidance receptor, homolog 2 isofor... 31 0.46
gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens] 31 0.46
gi|150170670 piccolo isoform 2 [Homo sapiens] 31 0.46
gi|150378539 piccolo isoform 1 [Homo sapiens] 31 0.46
gi|50962882 G patch domain containing 8 [Homo sapiens] 31 0.46
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 31 0.46
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens] 30 0.78
gi|38788260 bromodomain PHD finger transcription factor isoform ... 30 0.78
>gi|155030238 protein phosphatase 1, regulatory (inhibitor) subunit
1A [Homo sapiens]
Length = 171
Score = 347 bits (889), Expect = 4e-96
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MEQDNSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEIDEDRIPNPHL 60
MEQDNSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEIDEDRIPNPHL
Sbjct: 1 MEQDNSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEIDEDRIPNPHL 60
Query: 61 KSTLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAESTGTQESRPPGIPD 120
KSTLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAESTGTQESRPPGIPD
Sbjct: 61 KSTLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAESTGTQESRPPGIPD 120
Query: 121 TEVESRLGTSGTAKKTAECIPKTHERGSKEPSTKEPSTHIPPLDSKGANSV 171
TEVESRLGTSGTAKKTAECIPKTHERGSKEPSTKEPSTHIPPLDSKGANSV
Sbjct: 121 TEVESRLGTSGTAKKTAECIPKTHERGSKEPSTKEPSTHIPPLDSKGANSV 171
>gi|122937386 protein phosphatase 1, regulatory (inhibitor) subunit
1C [Homo sapiens]
Length = 109
Score = 87.4 bits (215), Expect = 5e-18
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 7/106 (6%)
Query: 3 QDNSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEIDEDRIPNPHLKS 62
+ NSP+KIQF VP+ + + PEAAEQIR+RRPTPA+LV+ ++ + PEID+ R PN +
Sbjct: 2 EPNSPKKIQFAVPVFQSQIAPEAAEQIRKRRPTPASLVILNEHNPPEIDDKRGPNTQGEL 61
Query: 63 TLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQG--EEPEGAAE 106
A SP+QRK+ PT+K V+H GQ + EE EG E
Sbjct: 62 QNA-SPKQRKQSVYTPPTIKG----VKHLKGQNESAFPEEEEGTNE 102
>gi|21735492 protein phosphatase 1, regulatory (inhibitor) subunit
1B isoform 1 [Homo sapiens]
Length = 204
Score = 62.8 bits (151), Expect = 1e-10
Identities = 45/124 (36%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 8 RKIQFTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEIDEDRIPNP-------HL 60
+KIQF+VP LDP E IRRRRPTPA L S+ SSPE E+ P+ HL
Sbjct: 7 KKIQFSVPAPPSQLDPRQVEMIRRRRPTPAMLFRLSEHSSPE--EEASPHQRASGEGHHL 64
Query: 61 KSTLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAESTGTQESRPPGIPD 120
KS ++ P++K +Q + E HL E + + E E R G P
Sbjct: 65 KS------KRPNPCAYTPPSLKAVQRIAESHLQSISNLNENQASEEEDELGELRELGYPR 118
Query: 121 TEVE 124
E E
Sbjct: 119 EEDE 122
>gi|139394648 DNA polymerase theta [Homo sapiens]
Length = 2590
Score = 35.8 bits (81), Expect = 0.018
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 29 IRRRRPTPATLVLTSDQSSPEIDEDRIPNPHLKSTLAMSPRQRKKMTRITPTMKELQ--M 86
+ + T L ++D+S + D + + + P Q K T ++P EL +
Sbjct: 1538 VNENQDTHQQLTCSNDESIIFSEMDSVQMVEALDNVDIFPVQEKNHTVVSPRALELSDPV 1597
Query: 87 MVEHHLGQQQQGEEPEGAAES--TGTQES 113
+ EHH G Q G++ E A +S TGT+++
Sbjct: 1598 LDEHHQGDQDGGDQDERAEKSKLTGTRQN 1626
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 34.7 bits (78), Expect = 0.041
Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 22/174 (12%)
Query: 18 EPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEIDEDRIPNPHLKSTLAMSPRQRKKMTRI 77
E ++ E +E L ++ + E E++ P + + + K T
Sbjct: 459 ETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKAT-- 516
Query: 78 TPTMKELQMMVEHHLGQQQQGEEPEGA---------AESTGTQESRPPGIPDTEVESRL- 127
P +KE + E GQ+++ EE EGA +E G+ E + E E+
Sbjct: 517 APEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAE 576
Query: 128 GTSGTAKKTAECIPKTHERGSKEPSTKEPSTHIP----------PLDSKGANSV 171
G AK+ + K+ E +KE + P P++ KG + V
Sbjct: 577 GEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPV 630
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 34.7 bits (78), Expect = 0.041
Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 22/174 (12%)
Query: 18 EPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEIDEDRIPNPHLKSTLAMSPRQRKKMTRI 77
E ++ E +E L ++ + E E++ P + + + K T
Sbjct: 83 ETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKAT-- 140
Query: 78 TPTMKELQMMVEHHLGQQQQGEEPEGA---------AESTGTQESRPPGIPDTEVESRL- 127
P +KE + E GQ+++ EE EGA +E G+ E + E E+
Sbjct: 141 APEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAE 200
Query: 128 GTSGTAKKTAECIPKTHERGSKEPSTKEPSTHIP----------PLDSKGANSV 171
G AK+ + K+ E +KE + P P++ KG + V
Sbjct: 201 GEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPV 254
>gi|38372931 brevican isoform 2 [Homo sapiens]
Length = 671
Score = 34.7 bits (78), Expect = 0.041
Identities = 44/166 (26%), Positives = 62/166 (37%), Gaps = 14/166 (8%)
Query: 11 QFTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQS---SPEIDEDRIPNPHLKSTLAM- 66
+ + P E L E A Q PA VL S E + R P H T +
Sbjct: 485 ELSSPGPEASLPTEPAAQEESLSQAPARAVLQPGASPLPDGESEASRPPRVHGPPTETLP 544
Query: 67 SPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAESTGTQESRPPGIPDTEVESR 126
+PR+R + T+ E + + E G + G P G +E TG+ E P +P T
Sbjct: 545 TPRERNLASPSPSTLVEAREVGEATGGPELSGV-PRGESEETGSSEGAPSLLPATR---- 599
Query: 127 LGTSGTAKKTAECIPKTHERGSKEPS-TKEPSTHIPPLDSKGANSV 171
GT + A P G P+ T + + P DS V
Sbjct: 600 -APEGTRELEA---PSEDNSGRTAPAGTSVQAQPVLPTDSASRGGV 641
>gi|38372935 brevican isoform 1 [Homo sapiens]
Length = 911
Score = 34.7 bits (78), Expect = 0.041
Identities = 44/166 (26%), Positives = 62/166 (37%), Gaps = 14/166 (8%)
Query: 11 QFTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQS---SPEIDEDRIPNPHLKSTLAM- 66
+ + P E L E A Q PA VL S E + R P H T +
Sbjct: 485 ELSSPGPEASLPTEPAAQEESLSQAPARAVLQPGASPLPDGESEASRPPRVHGPPTETLP 544
Query: 67 SPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAESTGTQESRPPGIPDTEVESR 126
+PR+R + T+ E + + E G + G P G +E TG+ E P +P T
Sbjct: 545 TPRERNLASPSPSTLVEAREVGEATGGPELSGV-PRGESEETGSSEGAPSLLPATR---- 599
Query: 127 LGTSGTAKKTAECIPKTHERGSKEPS-TKEPSTHIPPLDSKGANSV 171
GT + A P G P+ T + + P DS V
Sbjct: 600 -APEGTRELEA---PSEDNSGRTAPAGTSVQAQPVLPTDSASRGGV 641
>gi|56118310 nuclear casein kinase and cyclin-dependent kinase
substrate 1 [Homo sapiens]
Length = 243
Score = 33.5 bits (75), Expect = 0.092
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 45 QSSPEIDEDRIPNPHLKSTLAMSPRQRK-KMTRITPTMKELQMMVEHHLGQQQQGEEPEG 103
+S PE E ++P P LK+T+ SP + K K+ R T + + E +++ EEPE
Sbjct: 159 KSKPERKEKKMPKPRLKATVTPSPVKGKGKVGRPTAS----KASKEKTPSPKEEDEEPES 214
Query: 104 AAESTGTQESRPP 116
E T S PP
Sbjct: 215 PPEKK-TSTSPPP 226
>gi|4885243 FOS-like antigen 1 [Homo sapiens]
Length = 271
Score = 32.7 bits (73), Expect = 0.16
Identities = 43/156 (27%), Positives = 59/156 (37%), Gaps = 9/156 (5%)
Query: 15 PLLEPHLDPEAAEQ--IRRRRPTPATLVLTSDQSSPEIDE-DRIPNPHLKSTLAMSPRQR 71
PL P P IR P P +Q SPE +E R+ K A +R
Sbjct: 67 PLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQISPEEEERRRVRRERNKLAAAKCRNRR 126
Query: 72 KKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAESTG-TQESRPP--GIPDTEVESRLG 128
K++T E + + G Q++ EE + E E+ P IP+ E G
Sbjct: 127 KELTDF--LQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKEGDTG 184
Query: 129 -TSGTAKKTAECIPKTHERGSKEPSTKEPSTHIPPL 163
TSGT+ A C P S P + + H P L
Sbjct: 185 STSGTSSPPAPCRPVPCISLSPGPVLEPEALHTPTL 220
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 32.7 bits (73), Expect = 0.16
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 60 LKSTLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAESTGTQESRPPGIP 119
L TL ++ + ++ + + ++ Q + QQQQ ++P+ TQ+ + P +
Sbjct: 198 LPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALV 257
Query: 120 DTEVESRLGTSGTAKKTAECIPKTHERGSKEPSTKEPSTHIPP 162
+ S G + T + +P G PS P+ PP
Sbjct: 258 NYNRPSGPGPELSGPSTPQKLPVPAPGG--RPSPAPPAAAQPP 298
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 32.7 bits (73), Expect = 0.16
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 60 LKSTLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAESTGTQESRPPGIP 119
L TL ++ + ++ + + ++ Q + QQQQ ++P+ TQ+ + P +
Sbjct: 198 LPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALV 257
Query: 120 DTEVESRLGTSGTAKKTAECIPKTHERGSKEPSTKEPSTHIPP 162
+ S G + T + +P G PS P+ PP
Sbjct: 258 NYNRPSGPGPELSGPSTPQKLPVPAPGG--RPSPAPPAAAQPP 298
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 32.7 bits (73), Expect = 0.16
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 113 SRPPGIPDTEVESRLGTSGTAKKTAECIPKTHERGSKEPSTKEPSTHIP 161
S+PPG P V+S +SGTA+ + P + G+ P+T +P + P
Sbjct: 2132 SQPPGTPRPVVDSYSQSSGTARSNTD--PYSQPPGTPRPTTVDPYSQQP 2178
Score = 28.5 bits (62), Expect = 3.0
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 16 LLEPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEIDEDRIPNPHLKSTLAMSPRQRKKMT 75
LL+ LD E EQ +++R A + S+ P ID D I +P +K+ + K M
Sbjct: 3054 LLQDLLDQERQEQ-QQQRQMQAMIRQRSEPFFPNIDFDAITDPIMKAKMVALKGINKVMA 3112
Query: 76 RITPTMKELQMMVEHHLGQQQQGEE 100
+ M + M +GQ G +
Sbjct: 3113 QNNLGMPPMVMSRFPFMGQVVTGTQ 3137
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 32.3 bits (72), Expect = 0.20
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 11/118 (9%)
Query: 4 DNSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEIDEDRIP----NPH 59
+++ R + P P P + RRP+ A L SS R P +P
Sbjct: 73 ESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSP-GAGRAPGAMASPS 131
Query: 60 LKSTLAMSPRQRKKMTR-----ITPTMKELQMMVEHHLGQQQQGEE-PEGAAESTGTQ 111
S PR R R +TP K L++++E Q GE+ P + TGTQ
Sbjct: 132 GSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQ 189
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 32.3 bits (72), Expect = 0.20
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 11/118 (9%)
Query: 4 DNSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEIDEDRIP----NPH 59
+++ R + P P P + RRP+ A L SS R P +P
Sbjct: 176 ESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSP-GAGRAPGAMASPS 234
Query: 60 LKSTLAMSPRQRKKMTR-----ITPTMKELQMMVEHHLGQQQQGEE-PEGAAESTGTQ 111
S PR R R +TP K L++++E Q GE+ P + TGTQ
Sbjct: 235 GSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQ 292
>gi|146219832 myosin light chain kinase 3 [Homo sapiens]
Length = 819
Score = 32.3 bits (72), Expect = 0.20
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 93 GQQQQGEEPEGAAESTGTQESRPPGIPDTEVESRLGTS-GTAKKTAECIPKTHERGS 148
G + + PEGA E + QES PG E E R G GT A HE G+
Sbjct: 386 GTEPGEQTPEGARELSPLQESSSPGGVKAEEEQRAGAEPGTRPSLARSDDNDHEVGA 442
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 32.0 bits (71), Expect = 0.27
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 19/140 (13%)
Query: 39 LVLTSDQSSP------EIDEDRIPNPHLKSTLAMSPRQRKKMTRITPTMKELQMMVEHHL 92
LV TS Q+ P ++ ++P L P QR + P K Q+ + H
Sbjct: 146 LVQTSVQAKPGHVSPLQLTNIQVPQQAL-------PTQRLVVQSAAPGSKGGQVSLTVH- 197
Query: 93 GQQQQGEEPEGAAESTGTQESRPPGIPDTEVESRLGTSGTAKKTAECIPKTHERGSKEPS 152
G QQ PE + + S+ G P V +L G + +P T ER + +
Sbjct: 198 GTQQVHSPPEQSPVQANSSSSKTAGAPTGTVPQQLQVHG----VQQSVPVTQERSVVQAT 253
Query: 153 TKEPST-HIPPLDSKGANSV 171
+ P + PL +G V
Sbjct: 254 PQAPKPGPVQPLTVQGLQPV 273
>gi|157739942 gemin 5 [Homo sapiens]
Length = 1508
Score = 32.0 bits (71), Expect = 0.27
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 45 QSSPEIDEDRIPNPHLKSTLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGA 104
+ S E+++ R+ P K P+++KK T TP E E ++ G G
Sbjct: 724 KKSIELEKKRLSQPKAK------PKKKKKPTLRTPVKLESIDGNEEESMKENSGPVENGV 777
Query: 105 AESTGTQESRPPGIP 119
++ G +++R P +P
Sbjct: 778 SDQEGEEQAREPELP 792
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 32.0 bits (71), Expect = 0.27
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 9/142 (6%)
Query: 20 HLDPEAAEQIRRRRPTPATLV-LTSDQSSPEIDEDRIPNPHLK--STLAMSPRQRKKMTR 76
H P A + P AT T+ +P E +P H+ ST ++P T
Sbjct: 1407 HSPPTAGSPVPSTGPVTATSFHATTTYPTPSHPETTLPT-HVPPFSTSLVTPSTH---TV 1462
Query: 77 ITPTMKELQMMVEHHLGQQQQGEEPEGAAESTGTQESRPPGIPDTEVESRLGTSGTAKKT 136
ITPT ++ +H P ++TG+ + PP P T S+ +S + KT
Sbjct: 1463 ITPTHAQMATSASNHSAPTGTIPPPT-TLKATGSTHTAPPITPTTSGTSQAHSSFSTNKT 1521
Query: 137 AECIPKTHERGSKEPSTKEPST 158
+ +H + P ST
Sbjct: 1522 PTSL-HSHTSSTHHPEVTPTST 1542
Score = 28.9 bits (63), Expect = 2.3
Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 12/148 (8%)
Query: 20 HLDPEAAEQIRRRRPTPAT-LVLTSDQSSPEIDEDRIPNPHLKS--TLAMSPRQRKKMTR 76
H P I P AT T+ +P +P H+ S T ++P T
Sbjct: 1800 HSPPTGTTPISSTGPVTATSFQTTTTYPTPSHPHTTLPT-HVPSFSTSLVTPSTH---TV 1855
Query: 77 ITPTMKELQMMVEHHLGQQQQGE-EPEGAAESTGTQESRPPGIPDTEVESRLGTSGTAKK 135
I PT QM + G P ++TG+ + PP P T S+ +S + K
Sbjct: 1856 IIPT--HTQMATSASIHSMPTGTIPPPTTIKATGSTHTAPPMTPTTSGTSQSPSSFSTAK 1913
Query: 136 TAECIPKTHERGSKEPS-TKEPSTHIPP 162
T+ +P H + P T +T+I P
Sbjct: 1914 TSTSLP-YHTSSTHHPEVTPTSTTNITP 1940
>gi|66529005 ATP-binding cassette, sub-family C, member 5 isoform 1
[Homo sapiens]
Length = 1437
Score = 31.6 bits (70), Expect = 0.35
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 119 PDTEVESRLGTSGTAKKTAECIPKTHERGSKEPSTKEPSTHIPPLDSKGANSV 171
P E+ S+ TSG+ KK+ + PKT KE + K + L+ KG SV
Sbjct: 790 PPVEINSKKETSGSQKKSQDKGPKTGS-VKKEKAVKPEEGQLVQLEEKGQGSV 841
>gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens]
Length = 700
Score = 31.6 bits (70), Expect = 0.35
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 48 PEIDEDRIPNPHLKSTLAMSP--RQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAA 105
P++ + + P ++T+ P RQR + T + M+ ++Q EP A
Sbjct: 337 PQVASELLLKPREEATVLQPPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQAL 396
Query: 106 ESTGTQESRPPGIPDTEVESRLGTSGTAKKTA 137
E+R PG EV+++ S TA TA
Sbjct: 397 GPPEPPEARVPGKAQPEVDTKAEPSHTAALTA 428
>gi|193083163 roundabout, axon guidance receptor, homolog 2 isoform
ROBO2a [Homo sapiens]
Length = 1394
Score = 31.2 bits (69), Expect = 0.46
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 49 EIDEDRIPNPHLK---STLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAA 105
E D+DR+P P ++ S+ A+S Q+ T +E+Q M++ HL + + + + A
Sbjct: 1139 EEDDDRVPTPPVRGVASSPAISFGQQSTATLTPSPREEMQPMLQAHLDELTRAYQFDIAK 1198
Query: 106 ESTGTQESRPPGIP 119
++ Q + P P
Sbjct: 1199 QTWHIQSNNQPPQP 1212
>gi|61888896 roundabout, axon guidance receptor, homolog 2 isoform
ROBO2b [Homo sapiens]
Length = 1378
Score = 31.2 bits (69), Expect = 0.46
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 49 EIDEDRIPNPHLK---STLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAA 105
E D+DR+P P ++ S+ A+S Q+ T +E+Q M++ HL + + + + A
Sbjct: 1123 EEDDDRVPTPPVRGVASSPAISFGQQSTATLTPSPREEMQPMLQAHLDELTRAYQFDIAK 1182
Query: 106 ESTGTQESRPPGIP 119
++ Q + P P
Sbjct: 1183 QTWHIQSNNQPPQP 1196
>gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens]
Length = 416
Score = 31.2 bits (69), Expect = 0.46
Identities = 38/156 (24%), Positives = 55/156 (35%), Gaps = 17/156 (10%)
Query: 1 MEQDNSPRKIQFTVPLLEPHLD--PEAAEQIRRRRPTPATLVLTSDQSSPEIDEDRIPNP 58
+E+ NS + L+P D P + EQ R+ P L + D+ SPE +E+ P P
Sbjct: 273 LEKQNSLEYMDQNDDRLKPEADTLPRSGEQERKN---PMALYILKDKDSPETEENPAPEP 329
Query: 59 HLKSTLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAES--TGTQESRPP 116
+S P + L + + P A S TG S PP
Sbjct: 330 --RSATEPGPPGYSVSPAVPGRSPGLPI--------RSARRYPRSPARSPATGRTHSSPP 379
Query: 117 GIPDTEVESRLGTSGTAKKTAECIPKTHERGSKEPS 152
P + SR + I + E G E S
Sbjct: 380 RAPSSPGRSRSASRTLRTAGVHIIREQDEAGPVEIS 415
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 31.2 bits (69), Expect = 0.46
Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 9/161 (5%)
Query: 1 MEQDNSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPAT----LVLTSDQSSPEIDE-DRI 55
++QD +P+ I P P + I+ TP T L L D S P+ + D +
Sbjct: 230 LQQDGTPKSISSQQPEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRDASRPQTKQADIV 289
Query: 56 PNPHLKSTLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAESTGTQESRP 115
+K +L SP + + + TP Q H Q +P ++
Sbjct: 290 RGESVKPSLP-SP-SKPPIQQPTPGKPPAQQ--PGHEKSQPGPAKPPAQPSGLTKPLAQQ 345
Query: 116 PGIPDTEVESRLGTSGTAKKTAECIPKTHERGSKEPSTKEP 156
PG V+ T A+ P + GS++PS+++P
Sbjct: 346 PGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQP 386
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 31.2 bits (69), Expect = 0.46
Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 9/161 (5%)
Query: 1 MEQDNSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPAT----LVLTSDQSSPEIDE-DRI 55
++QD +P+ I P P + I+ TP T L L D S P+ + D +
Sbjct: 230 LQQDGTPKSISSQQPEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRDASRPQTKQADIV 289
Query: 56 PNPHLKSTLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAESTGTQESRP 115
+K +L SP + + + TP Q H Q +P ++
Sbjct: 290 RGESVKPSLP-SP-SKPPIQQPTPGKPPAQQ--PGHEKSQPGPAKPPAQPSGLTKPLAQQ 345
Query: 116 PGIPDTEVESRLGTSGTAKKTAECIPKTHERGSKEPSTKEP 156
PG V+ T A+ P + GS++PS+++P
Sbjct: 346 PGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQP 386
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 31.2 bits (69), Expect = 0.46
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 42 TSDQSSPEIDEDRIPNPHLKSTLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEP 101
T +++PE + P P A S K ++ ++ KE M G + + ++
Sbjct: 426 THPKNAPESKKGSSPKPKSCIKAAASQGAEKTVSEVSEQPKETSMTEPSEPGSKAEAKKA 485
Query: 102 EGAAESTGTQESRPPGIPDTEVESRLGTSGTAKKTAECIP--KTHERGSKEPS 152
G S + ES + +T+ + S ++K+T+ P K + G K P+
Sbjct: 486 LGGDVSDQSLESHSQKVSETQ----MCESNSSKETSLATPAGKESQEGPKHPT 534
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 31.2 bits (69), Expect = 0.46
Identities = 36/142 (25%), Positives = 53/142 (37%), Gaps = 23/142 (16%)
Query: 30 RRRRPTPATLVLTSDQSSPEIDEDRIPNPHLKSTLAMSPRQRKKMTRITPTMKELQMMVE 89
RRR P+P + SP I P+P K A P K+ +P K V
Sbjct: 587 RRRSPSPR-------RYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKR---RVS 636
Query: 90 HHLGQQQQGEEPEGAAESTGTQESRPPGIPDTEVESRLGTSGTAKKTAECIPKTHERGSK 149
H P S+ + R P + + R G+S + P+ ++R S
Sbjct: 637 H---------SPPPKQRSSPVTKRRSPSLSS---KHRKGSSPSRSTREARSPQPNKRHSP 684
Query: 150 EPSTKEPST-HIPPLDSKGANS 170
P + P T PP +GA+S
Sbjct: 685 SPRPRAPQTSSSPPPVRRGASS 706
Score = 28.9 bits (63), Expect = 2.3
Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 28/149 (18%)
Query: 30 RRRRPTPATLVLTSDQSSPEIDEDRIPNPHLKSTLAMSPRQRKKMTRITPTMKELQMMVE 89
+RR P+ ++ S E R P P+ + + SPR R T +P
Sbjct: 650 KRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHS--PSPRPRAPQTSSSPPPVR------ 701
Query: 90 HHLGQQQQGEEPEGAAESTGTQESRPPGIPDTEVESRLGTSGTAKKTAECIPKTHER--- 146
GA+ S ++S P SR KK A P++ R
Sbjct: 702 ------------RGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSS 749
Query: 147 -----GSKEPSTKEPSTHIPPLDSKGANS 170
GS EP+ K+P P+ S+ ++
Sbjct: 750 SRSVSGSPEPAAKKPPAPPSPVQSQSPST 778
>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
Length = 2382
Score = 30.4 bits (67), Expect = 0.78
Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 28/136 (20%)
Query: 15 PLLEPHLDPEAAEQ-IRRRRPTPATLVLTSDQSSPEIDEDRIPN-PHLKSTLAMSPRQRK 72
PL++P + A +Q + +P PA L PE+D D P P + + + R
Sbjct: 1602 PLVQPVANVPAVQQTLIHSQPQPALLPNQPHTHCPEVDSDTQPKAPGIDDIKTLEEKLR- 1660
Query: 73 KMTRITPTMKELQMMVEHHLGQQQQGE---EPEGAAESTGTQESRPPGIPDTEV-ESRLG 128
+ EH Q E EST T PGIP T V S+L
Sbjct: 1661 ------------SLFSEHSSSGAQHASVSLETSLVIESTVT-----PGIPTTAVAPSKLL 1703
Query: 129 TSGTAKKTAECIPKTH 144
TS T+ C+P T+
Sbjct: 1704 TS----TTSTCLPPTN 1715
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 30.4 bits (67), Expect = 0.78
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 1 MEQDNSPRKIQFTVPLLEPHLDPEAAEQIRRRRPT------PATLVLTSDQSSPEIDEDR 54
++Q + I T +++P + QI R +P P T+ T Q S
Sbjct: 2194 LQQSTLGKAIIRTPVMVQPGAPQQVMTQIIRGQPVSTAVSAPNTVSSTPGQKSLT---SA 2250
Query: 55 IPNPHLKSTLAMSPRQRKKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAESTGTQESR 114
+++S+ + PR ++ ++T M +L + + H G Q +G ++TG +
Sbjct: 2251 TSTSNIQSSASQPPRPQQGQVKLT--MAQLTQLTQGHGGNQGLTVVIQGQGQTTGQLQLI 2308
Query: 115 PPGI 118
P G+
Sbjct: 2309 PQGV 2312
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.125 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,040,698
Number of Sequences: 37866
Number of extensions: 404794
Number of successful extensions: 1802
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 1713
Number of HSP's gapped (non-prelim): 209
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.