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Search of human proteins with 154091007
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154091007 hypothetical protein LOC136288 [Homo sapiens]
(295 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154091007 hypothetical protein LOC136288 [Homo sapiens] 608 e-174
gi|153792294 myopalladin [Homo sapiens] 36 0.035
gi|109452611 chromosome 14 open reading frame 140 isoform a [Hom... 35 0.060
gi|5730097 tumor necrosis factor superfamily, member 13b isoform... 35 0.079
gi|122114651 ubiquitin specific peptidase 36 [Homo sapiens] 35 0.10
gi|91208420 bassoon protein [Homo sapiens] 35 0.10
gi|40556370 PHD finger protein 15 [Homo sapiens] 35 0.10
gi|16445033 ACRC protein [Homo sapiens] 34 0.18
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 34 0.18
gi|91982772 mucin 17 [Homo sapiens] 33 0.23
gi|11342676 thyroid hormone receptor interactor 10 [Homo sapiens] 33 0.23
gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo... 33 0.30
gi|102467235 inner centromere protein antigens 135/155kDa isofor... 33 0.30
gi|102467242 inner centromere protein antigens 135/155kDa isofor... 33 0.30
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.30
gi|33620763 sno, strawberry notch homolog 1 [Homo sapiens] 33 0.30
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 32 0.51
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 32 0.67
gi|145309324 FH2 domain containing 1 [Homo sapiens] 32 0.67
gi|148727255 microtubule associated serine/threonine kinase fami... 32 0.67
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 32 0.67
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 32 0.87
gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo sap... 32 0.87
gi|27734897 hypothetical protein LOC203111 [Homo sapiens] 32 0.87
gi|157168329 formin 1 [Homo sapiens] 31 1.1
gi|33286446 opioid growth factor receptor [Homo sapiens] 31 1.1
gi|4885217 excision repair cross-complementing rodent repair def... 31 1.1
gi|55770830 chromobox homolog 4 [Homo sapiens] 31 1.1
gi|40807477 retinoic acid induced 1 [Homo sapiens] 31 1.1
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 31 1.5
>gi|154091007 hypothetical protein LOC136288 [Homo sapiens]
Length = 295
Score = 608 bits (1567), Expect = e-174
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MRNTSKELQGATHRYAPCDWYYHVPVKRSEKAVDAPPASQIPGLSNLGDSHSENLPGTRR 60
MRNTSKELQGATHRYAPCDWYYHVPVKRSEKAVDAPPASQIPGLSNLGDSHSENLPGTRR
Sbjct: 1 MRNTSKELQGATHRYAPCDWYYHVPVKRSEKAVDAPPASQIPGLSNLGDSHSENLPGTRR 60
Query: 61 YWIKETDSEYVKLAKQGGRPDLLKHFAPGTRKGSPVAYSLPDWYIHHSKPPTASQQEVRA 120
YWIKETDSEYVKLAKQGGRPDLLKHFAPGTRKGSPVAYSLPDWYIHHSKPPTASQQEVRA
Sbjct: 61 YWIKETDSEYVKLAKQGGRPDLLKHFAPGTRKGSPVAYSLPDWYIHHSKPPTASQQEVRA 120
Query: 121 VSMPDYMVHEEFNPDQANGSYASRRGPFDFDMKTVWQREAEELEKEKKKLRLPAIDSKYL 180
VSMPDYMVHEEFNPDQANGSYASRRGPFDFDMKTVWQREAEELEKEKKKLRLPAIDSKYL
Sbjct: 121 VSMPDYMVHEEFNPDQANGSYASRRGPFDFDMKTVWQREAEELEKEKKKLRLPAIDSKYL 180
Query: 181 SKAGTPLGPKNPAGSRLSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPK 240
SKAGTPLGPKNPAGSRLSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPK
Sbjct: 181 SKAGTPLGPKNPAGSRLSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPK 240
Query: 241 TSRASVLSQSPRDLEGPQDAARLQDAEASEGPEDTPESSQSPEESVSASTPAELK 295
TSRASVLSQSPRDLEGPQDAARLQDAEASEGPEDTPESSQSPEESVSASTPAELK
Sbjct: 241 TSRASVLSQSPRDLEGPQDAARLQDAEASEGPEDTPESSQSPEESVSASTPAELK 295
>gi|153792294 myopalladin [Homo sapiens]
Length = 1320
Score = 36.2 bits (82), Expect = 0.035
Identities = 46/240 (19%), Positives = 91/240 (37%), Gaps = 25/240 (10%)
Query: 48 GDSHSENLPGTRRYWIKETDSEYVKLAKQGGRPDLL---------KHFAPGTRKGSPVAY 98
G ++LP + +E E V LA+ D L K +P K SP
Sbjct: 53 GGGGQDDLPDLSAFLSQEELDESVNLARLAINYDPLEKADETQARKRLSPDQMKHSPNLS 112
Query: 99 SLPDWYIHHSKPPTASQQEVRAVSMPDYMVHEEFNPDQANGSYASRRGPFDFDMKTVWQR 158
P++ + + PT+S++ + P Y + Q+ + ++ F ++ ++++
Sbjct: 113 FEPNFCQDNPRSPTSSKESPQEAKRPQYC-----SETQSKKVFLNKAADFIEELSSLFKS 167
Query: 159 EAEE------LEKEKKKLRLPAIDSKYLSKAGTPLGPKNPAGSRLSFP-PVPGQKNSSPT 211
+ + + K KL +K + + + + R S P P+P +
Sbjct: 168 HSSKRIRPRACKNHKSKLE---SQNKVMQENSSSFSDLSERRERSSVPIPIPADTRDNEV 224
Query: 212 NFSKLISNGYKDEWLQQQQRADSDKRTPKTSRASVLSQSPRDLEGPQDAARLQDAEASEG 271
N + + E Q A TP +S +S+ + P + P+ +L+ E EG
Sbjct: 225 NHALEQQEAKRREAEQAASEAAGGDTTPGSSPSSLYYEEPLG-QPPRFTQKLRSREVPEG 283
>gi|109452611 chromosome 14 open reading frame 140 isoform a [Homo
sapiens]
Length = 456
Score = 35.4 bits (80), Expect = 0.060
Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 24/195 (12%)
Query: 28 RSEKAV---DAPPASQIPGLSNLGDSHSENLPGTR---RYWIKETDSEYVKLAKQGGRPD 81
++EKAV D QI L G+S E + + R +K+T+ E ++ Q
Sbjct: 197 QAEKAVANFDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQ----- 251
Query: 82 LLKHFAPGTRKGSPVAYSLPDWYIHHSKPPTASQQEVRAVSMPDYMVHEEFNPDQAN--- 138
K A G LP + +K T + + P++ EEF+ D+
Sbjct: 252 --KEQAKENENGELQKIILPRSRVKGNKSNTM----YKPIFSPEFEFEEEFSRDRREDET 305
Query: 139 -GSYASRRGPFDFDMKTVWQREAEELEKEKKKLRLPAID---SKYLSKAGTPLGPKNPAG 194
G GPF F + + + E L K+R P + K+ + TP+G +
Sbjct: 306 WGRSQQNSGPFQFSDYRIQRLKRERLVASNNKIRDPVSEPSVEKFSPPSETPVGALQGSA 365
Query: 195 SRLSFPPVPGQKNSS 209
S P SS
Sbjct: 366 RNSSLSMAPDSSGSS 380
>gi|5730097 tumor necrosis factor superfamily, member 13b isoform 1
[Homo sapiens]
Length = 285
Score = 35.0 bits (79), Expect = 0.079
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 182 KAGTPLGPKNPAGSRLSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPKT 241
KAG P AG ++ PP PG+ NSS + +K G ++ Q + +D TP
Sbjct: 99 KAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTI 158
Query: 242 SRAS 245
+ S
Sbjct: 159 QKGS 162
>gi|122114651 ubiquitin specific peptidase 36 [Homo sapiens]
Length = 1123
Score = 34.7 bits (78), Expect = 0.10
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 24/135 (17%)
Query: 180 LSKAGTPLG---------PKNPAGS---RLSFPPV--------PGQKNSSPT---NFSKL 216
+S+ G+ LG PK P+GS +LS P PG+K P +FS
Sbjct: 489 ISRNGSTLGLKSQNGCIPPKLPSGSPSPKLSQTPTHMPTILDDPGKKVKKPAPPQHFSPR 548
Query: 217 ISNGYKDEWLQQQQRADSDKRTPKTSRASVLSQSPRDL-EGPQDAARLQDAEASEGPEDT 275
+ G R+ S ++ SR VLS SP+ L + L+ + S G +
Sbjct: 549 TAQGLPGTSNSNSSRSGSQRQGSWDSRDVVLSTSPKLLATATANGHGLKGNDESAGLDRR 608
Query: 276 PESSQSPEESVSAST 290
SS SPE S S+ +
Sbjct: 609 GSSSSSPEHSASSDS 623
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 34.7 bits (78), Expect = 0.10
Identities = 39/143 (27%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 155 VWQREAEELEKEKKKLRLPAIDSKYLSKAGTPL--GPKNPAGSRLSFPPVPGQKNSSPTN 212
V Q A+E + K PA S + G P GP PA + ++ P P P
Sbjct: 1342 VTQHFAKETQDPLKLHSSPASPSSASKEIGMPFSQGPGTPATTAVA--PCPA---GLPRG 1396
Query: 213 FSKLISNGYKDEWLQQQQRADSDKRTPKT----SRASVLSQSPRDLEGPQDAARLQDAEA 268
+ S + A S +P T S+ L Q+P L AAR + A
Sbjct: 1397 YMTPASPAGSERSPSPSSTAHSYGHSPTTANYGSQTEDLPQAPSGLAAAGRAAREKPLSA 1456
Query: 269 SEGPEDTPESSQSPEESVSASTP 291
S+G TP+ S++ S+S P
Sbjct: 1457 SDGEGGTPQPSRAYSYFASSSPP 1479
>gi|40556370 PHD finger protein 15 [Homo sapiens]
Length = 790
Score = 34.7 bits (78), Expect = 0.10
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 25 PVKRSEKAVDAPPASQIPGLSNLGDSHSENLPGTRRYWIKETDSEYVKL----AKQGGRP 80
PV R ++ PPA P + LG+ + PG RY + E D+ +++L K+ RP
Sbjct: 101 PVVRILPPLEGPPAQASPSSTMLGEGSQPDWPGGSRYDLDEIDAYWLELINSELKEMERP 160
Query: 81 DL 82
+L
Sbjct: 161 EL 162
>gi|16445033 ACRC protein [Homo sapiens]
Length = 691
Score = 33.9 bits (76), Expect = 0.18
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 201 PVPGQKNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPKTSRASVLSQSPRDLEGPQDA 260
P +SS N + D + + DSD + + V S D E P D+
Sbjct: 189 PDDNSDDSSDDNSDDSSDDNSDDSDVPDDKSDDSDVPDDSSDDSDVPDDSSDDSEAPDDS 248
Query: 261 ARLQDAEA-------SEGPEDTPESSQSPEESVSASTPAE 293
+ D+EA SE P+D+ + S++P++S S ++
Sbjct: 249 S--DDSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSEASD 286
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 33.9 bits (76), Expect = 0.18
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 189 PKNPAGSRLSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPKTSRASVLS 248
PK G R + V + P +K+ S G QQR+ S R KTS + LS
Sbjct: 1805 PKGTPGPRATPRKVAPPCLAQPAAPAKVPSPG--------QQRSRSLHRPAKTSELATLS 1856
Query: 249 QSPRDLEGPQDAARLQDAEASEGPEDTPESSQSPEE 284
Q PR P ARL +S + +P S P +
Sbjct: 1857 QPPRSATPP---ARLAKTPSSSSSQTSPASQPLPRK 1889
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 33.5 bits (75), Expect = 0.23
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 18/116 (15%)
Query: 191 NPAGSRLSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPKT--------- 241
+P S LS PV NS +++ S+ E Q SD+RTP T
Sbjct: 2116 SPEASTLSTTPV--DSNSPVITSTEVSSSPIPTEGTSMQTSTYSDRRTPLTSMPVSTTVV 2173
Query: 242 --SRASVLSQSPRDLEGP-----QDAARLQDAEASEGPEDTPESSQSPEESVSAST 290
S S LS +P D P + + +E + P TP +P S+ ST
Sbjct: 2174 ASSAISTLSTTPVDTSTPVTNSTEARSSPTTSEGTSMPTSTPSEGSTPFTSMPVST 2229
>gi|11342676 thyroid hormone receptor interactor 10 [Homo sapiens]
Length = 545
Score = 33.5 bits (75), Expect = 0.23
Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 25/167 (14%)
Query: 139 GSYASRRGPFDFDMKTVWQREAEELEKEKKKLRLPA------------IDSKYLSKAGTP 186
G ++R PF KTV + L E+++ RL +D + K
Sbjct: 314 GRSRTKRWPFGKKNKTVVTEDFSHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKD 373
Query: 187 LGPKNPA-GSRLSFPPVPGQKNSSPTNFSKLISNGYKDE-WLQQQQRADSDKRTPKTSRA 244
+ K P G S P Q + +N +L K E WL A+++ R ++R
Sbjct: 374 VYEKTPQMGDPASLEP---QIAETLSNIERLKLEVQKYEAWL-----AEAESRV-LSNRG 424
Query: 245 SVLSQSPRDLEGPQDAARLQDAEASEGPEDTPESSQSPEESVSASTP 291
LS+ R + P A D+ ++ +DT ESS+ P S TP
Sbjct: 425 DSLSRHARPPDPPASAP--PDSSSNSASQDTKESSEEPPSEESQDTP 469
>gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo
sapiens]
Length = 674
Score = 33.1 bits (74), Expect = 0.30
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 205 QKNSSPTNFSKLISNGYKDEWL----QQQQRADSDKRTPKTSRASVLSQSPRDLEGPQDA 260
+K + T+ S L W+ +++ +A DKRT ++ A S SPR +
Sbjct: 200 KKEAHRTSTSALSPGSKPSTWVSCPGEEENQATEDKRTERSKGARKTSVSPRSSGSDPRS 259
Query: 261 ARLQDAEASEGPEDTP-------ESSQSPEESVSASTP 291
+ EASE E+ E++ P+ S A P
Sbjct: 260 WEYRSGEASEEKEEKAHKETGKGEAAPGPQSSAPAQRP 297
>gi|102467235 inner centromere protein antigens 135/155kDa isoform 1
[Homo sapiens]
Length = 918
Score = 33.1 bits (74), Expect = 0.30
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 22/99 (22%)
Query: 197 LSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPKTSRASVLSQ------- 249
+S P+P + +P + + S G ++ TPK S+A +L
Sbjct: 187 MSTEPLPRTLSPTPASATAPTSQGIP---------TSDEESTPKKSKARILESITVSSLM 237
Query: 250 -SPRDLEGP-----QDAARLQDAEASEGPEDTPESSQSP 282
+P+D +G + A++L+ A+ S GP D+P SP
Sbjct: 238 ATPQDPKGQGVGTGRSASKLRIAQVSPGPRDSPAFPDSP 276
>gi|102467242 inner centromere protein antigens 135/155kDa isoform 2
[Homo sapiens]
Length = 914
Score = 33.1 bits (74), Expect = 0.30
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 22/99 (22%)
Query: 197 LSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPKTSRASVLSQ------- 249
+S P+P + +P + + S G ++ TPK S+A +L
Sbjct: 187 MSTEPLPRTLSPTPASATAPTSQGIP---------TSDEESTPKKSKARILESITVSSLM 237
Query: 250 -SPRDLEGP-----QDAARLQDAEASEGPEDTPESSQSP 282
+P+D +G + A++L+ A+ S GP D+P SP
Sbjct: 238 ATPQDPKGQGVGTGRSASKLRIAQVSPGPRDSPAFPDSP 276
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.1 bits (74), Expect = 0.30
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 38/146 (26%)
Query: 153 KTVWQREAEELEKEKKKLRLPAIDSKYLSKAGTPLGPKNPAGSRLSF-------PPVPGQ 205
+T +R E KK R+ + S+ LS P++ A SRLS P P Q
Sbjct: 735 RTSQRRSRSNSSPEMKKSRISSRRSRSLSS------PRSKAKSRLSLRRSLSGSSPCPKQ 788
Query: 206 KNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPKTSRASVLSQSPRDLEGPQDAARLQD 265
K+ +P S+ S+ Q +A S RTP S S P+
Sbjct: 789 KSQTPPRRSRSGSS---------QPKAKS--RTPPRRSRSSSSPPPK------------- 824
Query: 266 AEASEGPEDTPESSQSPEESVSASTP 291
+ S+ P SS SP V + TP
Sbjct: 825 -QKSKTPSRQSHSSSSPHPKVKSGTP 849
>gi|33620763 sno, strawberry notch homolog 1 [Homo sapiens]
Length = 1392
Score = 33.1 bits (74), Expect = 0.30
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 24/175 (13%)
Query: 130 EEFNP--DQANGSYASRRGPFDFDMKTVWQ-REAEELEKEKKKLRLPAIDSKYLSKAGTP 186
++FNP D++N + D W R+ + KEKKK + DS + +
Sbjct: 758 DDFNPFLDESN----------EDDESDPWLIRKDHKKNKEKKKKKSIDPDSIQSALLASG 807
Query: 187 LGPKNPAGSRLSFPPVPGQKNSSPTNF-----SKLISNGYKDEWLQQQQRADSDK--RTP 239
LG K P+ S S P + NS+P N S LI++ E QQ ++ DK +
Sbjct: 808 LGSKRPSFS--STPVISPAPNSTPANSNTNSNSSLITSQDAVERAQQMKKDLLDKLEKLA 865
Query: 240 KTSRASVLSQSPRDLEGPQDAARLQDAEASEGPEDTPESSQSPEESVSASTPAEL 294
+ + L + +L GP++ A + + D + S S E P E+
Sbjct: 866 EDLPPNTLDELIDELGGPENVAEMTGRKGRVVSND--DGSISYESRSELDVPVEI 918
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 32.3 bits (72), Expect = 0.51
Identities = 36/156 (23%), Positives = 55/156 (35%), Gaps = 24/156 (15%)
Query: 158 REAEELEKEKK------KLRLPAIDSKYLSKAGTPLGPKNPAGSRLSFPPVPGQKNSSPT 211
++ +E EKEK+ +LR+ ++ L + G R VP K +P
Sbjct: 187 QDEDEEEKEKRGRRKASELRIHDLEDD-LEMSSDASDASGEEGGR-----VPKAKKKAPL 240
Query: 212 ---NFSKLISNGYKDEWLQQQQRAD---------SDKRTPKTSRASVLSQSPRDLEGPQD 259
K G DE + D SD + +++P+ EGP+
Sbjct: 241 AKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEGPKG 300
Query: 260 AARLQDAEASEGPEDTPESSQSPEESVSASTPAELK 295
D+ E PE + EE A TP E K
Sbjct: 301 VDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKK 336
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 32.0 bits (71), Expect = 0.67
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 164 EKEKKKLRLPAIDSKYLSKAGTPLGPKNPAGSRLSFPPVPGQKNSSPTNFSKLISNGYKD 223
E+ + + R P D+ S+ L P+ SR + P K+SSP S+ S +
Sbjct: 858 ERRQSQSRSPKRDTTRESRRSESLSPRRET-SRENKRSQPRVKDSSPGEKSR--SQSRER 914
Query: 224 EWLQQQQRADSDKRTPKTSRASVLSQSP 251
E + QR + ++RT K SR+ S+SP
Sbjct: 915 ESDRDGQRRERERRTRKWSRSRSHSRSP 942
>gi|145309324 FH2 domain containing 1 [Homo sapiens]
Length = 1143
Score = 32.0 bits (71), Expect = 0.67
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 189 PKNPAGSRLSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPKTSRASVLS 248
PK P S P VP + P+ +++ + A + T S+ +
Sbjct: 1017 PKTP-----SVPSVPHELPRVPSFARNTVASSSRSMRTDLPPVAKAPGITRTVSQRQLRV 1071
Query: 249 QSPRDLEGPQDAARLQDAEASEGPEDTPESSQSPEESVSASTPAELK 295
+ + P+D++ L+ A ++ P+ PES++ P SA+T A LK
Sbjct: 1072 KGDPEDAAPKDSSTLRRASSARAPKKRPESAEGP----SANTEAPLK 1114
Score = 29.3 bits (64), Expect = 4.3
Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 8/135 (5%)
Query: 157 QREAEELEKEKKKLRLPAIDSKYLSKAGTPLGPKNPAGSRLSFPPVPGQKNSSPTNFSKL 216
+ + E L K+ + LP + + +S + P N SRLS P ++ + L
Sbjct: 501 ENDVELLTKKGAEGLLPFLHPRPISPSSPSYRPPNTRRSRLSLGP-----SADRELLTFL 555
Query: 217 ISNGYKDEWLQQQQRADSDKRTPKTSRASVLSQSPRDLEGPQDAARLQDAEASEGPEDTP 276
S+ E + + + +P+ +R ++ P ++ QD++ +AS G E+ P
Sbjct: 556 ESSTGSPE--EPNKFHSLPRSSPRQARPTIACLEPAEVR-HQDSSFAHKPQASGGQEEAP 612
Query: 277 ESSQSPEESVSASTP 291
+ ++A+ P
Sbjct: 613 NPPSAQAHQLAAAQP 627
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 32.0 bits (71), Expect = 0.67
Identities = 48/179 (26%), Positives = 67/179 (37%), Gaps = 45/179 (25%)
Query: 161 EELEKEKKKLRLPAIDSK-----YLSKAGT----------PLGPKNPAGSRLSFP----- 200
E+ + K+ LR +DSK YL K + L PK AGS P
Sbjct: 1476 EKSSQAKELLRCEKLDSKLANIDYLRKKMSLEDKEDNLCPVLKPKMTAGSHECLPGNPVR 1535
Query: 201 PVPGQKNSSPTNFSKLISNGYKDEWLQQQQ---------RADSDKRTPK-TSRASVLSQS 250
P GQ+ P + S+ + + R DS P + S + +S
Sbjct: 1536 PTGGQQEPPPASESRAFVSSTHAAQMSAVSFVPLKALTGRVDSGTEKPGLVAPESPVRKS 1595
Query: 251 PRD-------------LEGPQDAARLQDAEASEGPEDTPESSQSPEES--VSASTPAEL 294
P + +EG D A L +AS+ +PES+QSP S V AS P L
Sbjct: 1596 PSEYKLEGRSVSCLKPIEGTLDIALLSGPQASKTELPSPESAQSPSPSGDVRASVPPVL 1654
Score = 32.0 bits (71), Expect = 0.67
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
Query: 178 KYLSKAGTPLGPKNPA---GSRLSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQ--QRA 232
K L K + PK A L P + +K+ ++F L +G K+ ++Q QR
Sbjct: 1881 KELGKVRRGVEPKPEALLARRSLQPPGIESEKSEKLSSFPSLQKDGAKEPERKEQPLQRH 1940
Query: 233 DSDKRTPKTSRASVLS-------QSPRDLEGPQDAARLQDAEASEGPEDTPESSQSPEES 285
S P + + S SP G + A+ AE S P+D P+ + ES
Sbjct: 1941 PSSIPPPPLTAKDLSSPAARQHCSSPSHASGREPGAKPSTAEPSSSPQDPPKPVAAHSES 2000
Query: 286 VS 287
S
Sbjct: 2001 SS 2002
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 32.0 bits (71), Expect = 0.67
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 12/158 (7%)
Query: 150 FDMKTVWQREAEELEKEKKKLRLPAID--SKYLSKAGTPLGPK-----NPAGSRLSFPPV 202
F K + E +LE K L I +++ S+ GT + + +P G+ + F
Sbjct: 521 FQKKVQFGNENTKLELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQFATY 580
Query: 203 PGQKNSSPTNFSKLISNGYKDEWLQ----QQQRADSDKRTPKTSRASVLSQSPRDLEGPQ 258
K + + + L + K W + QQ + S K + V+ QS ++ GP
Sbjct: 581 EEAKKAISSTEAVLNNRFIKVYWHREGSTQQLQTTSPKPLVQQPILPVVKQSVKERLGPV 640
Query: 259 DAARLQDAEASEGPEDTPE-SSQSPEESVSASTPAELK 295
++ ++ AEA D P+ S S + + PA LK
Sbjct: 641 PSSTIEPAEAQSASSDLPQVLSTSTGLTKTVYNPAALK 678
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 31.6 bits (70), Expect = 0.87
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 39/197 (19%)
Query: 108 SKPPTASQQEVRAVSMPD---YMVHEEFNPD---QANGSYASRRGPFDFDMKTVWQREAE 161
+K A+QQ+ A S+ D + + P+ QANG A + K ++E
Sbjct: 35 AKATGATQQDANASSLLDIYSFWLKSAKVPERKLQANGPVAKKA------KKKASSSDSE 88
Query: 162 ELEKEKKKLRLPAIDSKYLSKAGTPLGPKNPAGSRLSFPPVPGQKNSSPTNFSKLISNGY 221
+ +E+++++ P KA P R+ PP +S ++ S+ S+
Sbjct: 89 DSSEEEEEVQGPPA-----KKAAVP-------AKRVGLPPGKAAAKASESSSSEESSDDD 136
Query: 222 KDEWLQQQQRADSDKRTPKTSRASVLSQSPRDLEGPQDAARLQDAEASEGPEDTPESSQS 281
+E ++Q K K ++A P A+ D+++ ED P +Q
Sbjct: 137 DEEDQKKQPVQKGVKPQAKAAKA------------PPKKAKSSDSDSDSSSEDEPPKNQK 184
Query: 282 PE---ESVSASTPAELK 295
P+ +V A T A K
Sbjct: 185 PKITPVTVKAQTKAPPK 201
>gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo
sapiens]
Length = 528
Score = 31.6 bits (70), Expect = 0.87
Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 36/187 (19%)
Query: 121 VSMPDYMVHEEFNPDQANG-SYASRRGPFDFDMKT--------VWQREAEELEKEKKKLR 171
VS+ + H E + D S A + D +T VW ++ E
Sbjct: 229 VSVTELQTHPELDTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKYRSEALPTD 288
Query: 172 LPAIDSKYLSKAGTPLGPKNPAGSRLSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQQR 231
LPA + L++ PK PPVP SSPT + ++E ++++
Sbjct: 289 LPAPSAPDLTE------PKEEQ------PPVP----SSPTEEEEEEEEEEEEEAEEEEEE 332
Query: 232 ADSDKRTPKTSRASVLSQSPRDLEGPQD-----------AARLQDAEASEGPEDTPESSQ 280
DS++ P S S + D P D AR + EA +D ES +
Sbjct: 333 EDSEEAPPPLSPPQPASPAEEDKMPPYDEQTQAFIDAAQEARNKFEEAERSLKDMEESIR 392
Query: 281 SPEESVS 287
+ E+ +S
Sbjct: 393 NLEQEIS 399
>gi|27734897 hypothetical protein LOC203111 [Homo sapiens]
Length = 374
Score = 31.6 bits (70), Expect = 0.87
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 226 LQQQQRADSDKRTPKTSRASVLSQSPRDLEGPQ--DAARLQDAEASEGPEDTPE-SSQSP 282
LQ Q D++ P S ++SP LEG Q + A Q +A+ G E+ P+ + P
Sbjct: 203 LQPQGTVGKDEQAPLLETISKENESPEILEGSQFVETAEEQQLQATLGKEEQPQLLERIP 262
Query: 283 EESVS 287
+E+V+
Sbjct: 263 KENVT 267
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 31.2 bits (69), Expect = 1.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 148 FDFDMKTVWQREAEELEKEKKKLRLPAIDSKYLSKAGTPLGPKNPAGS 195
F D KT+W+RE++ + KE+ K+ ++ SK S+ NP S
Sbjct: 1135 FCSDFKTIWKRESKNISKERLKMAQESV-SKLTSEKKVETKKINPTAS 1181
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 31.2 bits (69), Expect = 1.1
Identities = 37/135 (27%), Positives = 53/135 (39%), Gaps = 36/135 (26%)
Query: 173 PAIDSKYLSKAGTPLGPK--NPAGSRLSFPP--VPGQKNSSPTNFSKLISNGYKDEWLQQ 228
PA D S + TP GP+ PAG + P PG + + P
Sbjct: 529 PAGDEPAESPSETP-GPRPAGPAGDEPAESPSETPGPRPAGPAG---------------- 571
Query: 229 QQRADSDKRTPKTSRASVL----SQSPRDLEGPQDAARLQDAEASEGPEDTP-------- 276
+ A+S TP S A ++SP + GP+ A D E +E P +TP
Sbjct: 572 DEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGD-EPAESPSETPGPRPAGPA 630
Query: 277 --ESSQSPEESVSAS 289
E ++SP E+ S
Sbjct: 631 GDEPAESPSETPGPS 645
Score = 28.9 bits (63), Expect = 5.6
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 21/118 (17%)
Query: 182 KAGTPLGPKNPAGSRLSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPKT 241
K GTP P G P G P S + G + + A+S TP
Sbjct: 511 KEGTPGSPSETPG-----PSPAGPAGDEPAE-SPSETPGPRPAGPAGDEPAESPSETPGP 564
Query: 242 SRASVL----SQSPRDLEGPQDAARLQDAEASEGPEDTP----------ESSQSPEES 285
A ++SP + GP A +D E +E P +TP E ++SP E+
Sbjct: 565 RPAGPAGDEPAESPSETPGPSPAGPTRD-EPAESPSETPGPRPAGPAGDEPAESPSET 621
Score = 28.1 bits (61), Expect = 9.6
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 232 ADSDKRTPKTSRASVL----SQSPRDLEGPQDAARLQDAEASEGPEDTP-ESSQSPEESV 286
A+S TP A ++SP + GP+ A D E +E P +TP S P
Sbjct: 535 AESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGD-EPAESPSETPGPSPAGPTRDE 593
Query: 287 SASTPAE 293
A +P+E
Sbjct: 594 PAESPSE 600
>gi|4885217 excision repair cross-complementing rodent repair
deficiency, complementation group 4 [Homo sapiens]
Length = 916
Score = 31.2 bits (69), Expect = 1.1
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 227 QQQQRADSDKRT-PKTSRASVLSQ---SPRDLEGPQDAARLQDAEASEGPEDTPESSQSP 282
Q ++RA + +RT K R L+Q P +LE D E S PE PE +
Sbjct: 473 QNKERASTKERTLKKKKRKLTLTQMVGKPEELEEEGDVEEGYRREISSSPESCPEEIKHE 532
Query: 283 EESVSASTPA 292
E V+ S+ A
Sbjct: 533 EFDVNLSSDA 542
>gi|55770830 chromobox homolog 4 [Homo sapiens]
Length = 560
Score = 31.2 bits (69), Expect = 1.1
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 2 RNTSKELQGATHRYAPCDWYYHVPVKRSEKAVDAPPASQIPGLSNLGDSHSENLPGTRRY 61
R+ S + + A R+ P D + EK V+APP + +S + D ++ +
Sbjct: 290 RSPSHKKRAADERHPPADRTFKKAAGAEEKKVEAPPKRREEEVSGVSDPQPQDAGSRKLS 349
Query: 62 WIKETDSEYVKLAKQGGRPDLLKHFAPGTRKGSPVAYSLPDWYIHH 107
KE E + + +PDLL + P P + P + HH
Sbjct: 350 PTKEAFGE--QPLQLTTKPDLLA-WDPARNTHPPSHHPHPHPHHHH 392
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 31.2 bits (69), Expect = 1.1
Identities = 62/261 (23%), Positives = 98/261 (37%), Gaps = 24/261 (9%)
Query: 49 DSHSENLPGTRRY-WIKETDSEYVKLAKQGGRPDLLKHFAPGTRKGSPVAYSLPDWYIHH 107
++HS L + W + + E + + Q + K F+PG + VA++ PD
Sbjct: 644 ENHSACLDSVAKSAWPRPGEPEALPDSLQLDKGGNAKDFSPGLFEDPSVAFATPD-PKKT 702
Query: 108 SKPPTASQQEVRAVSMPDYMVHE-EFNPDQANGSYASRRGPFDFDMKTV------WQREA 160
+ P + + V PD + PD S A PF + + + W
Sbjct: 703 TGPLSFGTKPTLGVPAPDPTTAAFDCFPDTTAASSADSANPFAWPEENLGDACPRWGLHP 762
Query: 161 EELEKEKKKLRLPAIDSKYLSKAGTPLGPKNPAGSRLSF--PPVPGQKNSS-PTNFSKLI 217
EL K ++ + G G + A + L F PG+K +S P +F +
Sbjct: 763 GELTK--------GLEQGGKASDGISKGDTHEASACLGFQEEDPPGEKVASLPGDFKQEE 814
Query: 218 SNGYKDE---WLQQQQRADSDKRTPKTSRASVLSQSPRDLEGPQDAARLQDAEASEGPED 274
G K+E LQ + A +D R + SR + DL +R +D EA E
Sbjct: 815 VGGVKEEAGGLLQCPEVAKAD-RWLEDSRHCCSTADFGDLPLLPPTSRKEDLEAEEEYSS 873
Query: 275 TPESSQSPEESVSASTPAELK 295
E SPE+ P K
Sbjct: 874 LCELLGSPEQRPGMQDPLSPK 894
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 30.8 bits (68), Expect = 1.5
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 236 KRTPKTSRASVLSQSPRDLEGPQDAARLQDAE---ASEGPEDTPESSQSPEESVSASTPA 292
+RT KT A + +Q P+++ + A ++E PE +PES + P S S ST
Sbjct: 707 ERTTKTM-AMLTTQGPQEMTSESTIKSIPQASLEPSAEIPEGSPESPKDPAPSPSVSTTG 765
Query: 293 E 293
E
Sbjct: 766 E 766
Score = 29.3 bits (64), Expect = 4.3
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 192 PAGSRLSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPKTSRASVLSQSP 251
P S P +P + S P+ S++ S E + + TP +S S S+SP
Sbjct: 1084 PEPSPTPLPTLPKELTSDPSTPSEVTSLSPTSEQVPESDTTPDLDTTPYSSTVSEYSRSP 1143
Query: 252 RDLEGPQDAARLQDAEASEGPEDTPESSQSPE 283
D S P TP+ + +P+
Sbjct: 1144 -------------DPSPSPHPTTTPDPTMAPD 1162
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.126 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,866,273
Number of Sequences: 37866
Number of extensions: 719999
Number of successful extensions: 2790
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 2670
Number of HSP's gapped (non-prelim): 220
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.