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Search of human proteins with 11024696
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11024696 F-box only protein 24 isoform 2 [Homo sapiens]
(318 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11024696 F-box only protein 24 isoform 2 [Homo sapiens] 654 0.0
gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens] 607 e-174
gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [H... 44 2e-04
gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [H... 44 2e-04
gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [H... 44 2e-04
gi|42558258 F-box protein 33 [Homo sapiens] 42 6e-04
gi|83035136 F-box protein 31 [Homo sapiens] 42 7e-04
gi|22325388 F-box protein FBG4 isoform 1 [Homo sapiens] 35 0.11
gi|18643385 F-box protein FBG4 isoform 2 [Homo sapiens] 35 0.11
gi|15834621 F-box only protein 4 isoform 2 [Homo sapiens] 34 0.20
gi|15834619 F-box only protein 4 isoform 1 [Homo sapiens] 34 0.20
gi|11545739 F-box and WD repeat domain containing 4 [Homo sapiens] 34 0.20
gi|8923179 F-box and leucine-rich repeat protein 12 [Homo sapiens] 33 0.26
gi|15812186 F-box only protein 3 isoform 1 [Homo sapiens] 33 0.33
gi|15812188 F-box only protein 3 isoform 2 [Homo sapiens] 33 0.33
gi|122937335 F-box protein 46 [Homo sapiens] 33 0.33
gi|30520327 F-box protein 27 [Homo sapiens] 33 0.44
gi|6005902 thrombospondin 3 precursor [Homo sapiens] 32 0.57
gi|74229029 F-box only protein 7 isoform 2 [Homo sapiens] 32 0.97
gi|74229027 F-box only protein 7 isoform 1 [Homo sapiens] 32 0.97
gi|111185922 F-box protein 36 [Homo sapiens] 31 1.3
gi|22748931 F-box and leucine-rich repeat protein 14 [Homo sapiens] 30 2.8
gi|110349719 titin isoform N2-A [Homo sapiens] 30 2.8
gi|110349717 titin isoform novex-2 [Homo sapiens] 30 2.8
gi|110349713 titin isoform novex-1 [Homo sapiens] 30 2.8
gi|110349715 titin isoform N2-B [Homo sapiens] 30 2.8
gi|67003566 F-box protein 48 [Homo sapiens] 30 2.8
gi|73476377 LBXCOR1 homolog [Homo sapiens] 30 3.7
gi|169218211 PREDICTED: similar to plectin 1, partial [Homo sapi... 29 4.8
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 29 4.8
>gi|11024696 F-box only protein 24 isoform 2 [Homo sapiens]
Length = 318
Score = 654 bits (1688), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV 60
MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV
Sbjct: 1 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV 60
Query: 61 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQDTKGLYFQAFGGRRRCLSKSVAPLLAH 120
ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQDTKGLYFQAFGGRRRCLSKSVAPLLAH
Sbjct: 61 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQDTKGLYFQAFGGRRRCLSKSVAPLLAH 120
Query: 121 GYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVLCRGAKDFASDPRCD 180
GYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVLCRGAKDFASDPRCD
Sbjct: 121 GYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVLCRGAKDFASDPRCD 180
Query: 181 TVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQ 240
TVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQ
Sbjct: 181 TVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQ 240
Query: 241 ETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLRVACMTSNQSSTL 300
ETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLRVACMTSNQSSTL
Sbjct: 241 ETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLRVACMTSNQSSTL 300
Query: 301 YVTDPILCSWLQPPWPGG 318
YVTDPILCSWLQPPWPGG
Sbjct: 301 YVTDPILCSWLQPPWPGG 318
>gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens]
Length = 580
Score = 607 bits (1564), Expect = e-174
Identities = 303/318 (95%), Positives = 303/318 (95%), Gaps = 14/318 (4%)
Query: 1 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV 60
MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV
Sbjct: 1 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV 60
Query: 61 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQD--------------TKGLYFQAFGGR 106
ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQ TKGLYFQAFGGR
Sbjct: 61 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR 120
Query: 107 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL 166
RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL
Sbjct: 121 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL 180
Query: 167 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF 226
CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF
Sbjct: 181 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF 240
Query: 227 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH 286
HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH
Sbjct: 241 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH 300
Query: 287 LRVACMTSNQSSTLYVTD 304
LRVACMTSNQSSTLYVTD
Sbjct: 301 LRVACMTSNQSSTLYVTD 318
>gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [Homo
sapiens]
Length = 589
Score = 43.5 bits (101), Expect = 2e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 39 IQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICR 84
I L P EL +++SFL +DL+ QTCRY+ + + +WR C+
Sbjct: 163 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 208
>gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [Homo
sapiens]
Length = 707
Score = 43.5 bits (101), Expect = 2e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 39 IQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICR 84
I L P EL +++SFL +DL+ QTCRY+ + + +WR C+
Sbjct: 281 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 326
>gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [Homo
sapiens]
Length = 627
Score = 43.5 bits (101), Expect = 2e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 39 IQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICR 84
I L P EL +++SFL +DL+ QTCRY+ + + +WR C+
Sbjct: 201 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 246
>gi|42558258 F-box protein 33 [Homo sapiens]
Length = 555
Score = 42.4 bits (98), Expect = 6e-04
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 13 RVKRSCPSCGSELGVEEKRGK----GNPISIQLFPPELVEHIISFLPVRDLVALGQTCRY 68
RV R P GS +RG+ G P EL+ HI SFLP D + +C +
Sbjct: 43 RVLRGRPGAGSR-----RRGRMALCGQAAGAASLPSELIVHIFSFLPAPDRLRASASCSH 97
Query: 69 FHEVCDGEGVW--RRICRRLSPRLQ 91
+ E +W RIC R+SP Q
Sbjct: 98 WRECLFYPALWPQLRICLRVSPAEQ 122
>gi|83035136 F-box protein 31 [Homo sapiens]
Length = 539
Score = 42.0 bits (97), Expect = 7e-04
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 38 SIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICR 84
S+ PPEL+ I + LP DL +L Q C F + + +WRR CR
Sbjct: 66 SLLELPPELLVEIFASLPGTDLPSLAQVCTKFRRILHTDTIWRRRCR 112
>gi|22325388 F-box protein FBG4 isoform 1 [Homo sapiens]
Length = 287
Score = 34.7 bits (78), Expect = 0.11
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 37 ISIQLFPPELVEHIISFLPVRDLVALGQ-TCRYFHEVCDGEGVW 79
+++ PPEL+ ++S +P R LV + CR + ++ DG VW
Sbjct: 25 LALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVW 68
>gi|18643385 F-box protein FBG4 isoform 2 [Homo sapiens]
Length = 278
Score = 34.7 bits (78), Expect = 0.11
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 37 ISIQLFPPELVEHIISFLPVRDLVALGQ-TCRYFHEVCDGEGVW 79
+++ PPEL+ ++S +P R LV + CR + ++ DG VW
Sbjct: 16 LALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVW 59
>gi|15834621 F-box only protein 4 isoform 2 [Homo sapiens]
Length = 307
Score = 33.9 bits (76), Expect = 0.20
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 36 PISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQDT 95
PI +QL+ I+SFL DL LG T Y++E +WR R P D
Sbjct: 63 PIDVQLY-------ILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDW 115
Query: 96 KGL 98
K L
Sbjct: 116 KSL 118
>gi|15834619 F-box only protein 4 isoform 1 [Homo sapiens]
Length = 387
Score = 33.9 bits (76), Expect = 0.20
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 36 PISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQDT 95
PI +QL+ I+SFL DL LG T Y++E +WR R P D
Sbjct: 63 PIDVQLY-------ILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDW 115
Query: 96 KGL 98
K L
Sbjct: 116 KSL 118
>gi|11545739 F-box and WD repeat domain containing 4 [Homo
sapiens]
Length = 412
Score = 33.9 bits (76), Expect = 0.20
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 43 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICR 84
P EL+ I S+L +R L L Q CR+ + +WRRI R
Sbjct: 32 PEELLLLICSYLDMRALGRLAQVCRWLRRFTSCDLLWRRIAR 73
>gi|8923179 F-box and leucine-rich repeat protein 12 [Homo
sapiens]
Length = 326
Score = 33.5 bits (75), Expect = 0.26
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 43 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRI 82
P ++ I S+LPVRD + + + C + + D +WR +
Sbjct: 8 PDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHV 47
>gi|15812186 F-box only protein 3 isoform 1 [Homo sapiens]
Length = 471
Score = 33.1 bits (74), Expect = 0.33
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 36 PISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRR 85
P++++ P + + I+SFL RDL+ R ++ + +WRR C++
Sbjct: 10 PLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKK 59
>gi|15812188 F-box only protein 3 isoform 2 [Homo sapiens]
Length = 415
Score = 33.1 bits (74), Expect = 0.33
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 36 PISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRR 85
P++++ P + + I+SFL RDL+ R ++ + +WRR C++
Sbjct: 10 PLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKK 59
>gi|122937335 F-box protein 46 [Homo sapiens]
Length = 603
Score = 33.1 bits (74), Expect = 0.33
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 41 LFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGV 78
L P ++ I SFLP R L AL TC +F + + GV
Sbjct: 475 LLPEHVLVKIFSFLPTRALAALKCTCHHFKGIIEAFGV 512
>gi|30520327 F-box protein 27 [Homo sapiens]
Length = 283
Score = 32.7 bits (73), Expect = 0.44
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 37 ISIQLFPPELVEHIISFLPVRDLVA-LGQTCRYFHEVCDGEGVWRRICRR 85
+ + PPEL+ ++S +P R L+ Q CR + + DG+ +W I R
Sbjct: 24 LDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRALVDGQALWLLILAR 73
>gi|6005902 thrombospondin 3 precursor [Homo sapiens]
Length = 956
Score = 32.3 bits (72), Expect = 0.57
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 237 LVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLP--HLRVACMTS 294
+VG+ + + E+GK++++ + + L R++TV L LR S P HL V C
Sbjct: 89 VVGKINKVLVRYQREDGKVHAVNLQQAGLADGRTHTVLLRLRGPSRPSPALHLYVDCKLG 148
Query: 295 NQSSTLYVTDPI 306
+Q + L PI
Sbjct: 149 DQHAGLPALAPI 160
>gi|74229029 F-box only protein 7 isoform 2 [Homo sapiens]
Length = 443
Score = 31.6 bits (70), Expect = 0.97
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 41 LFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWR----RICRRLSPRLQDQDTK 96
+ P EL I L VR +++L CR + +WR R R + R+QD D K
Sbjct: 255 VLPLELKLRIFRLLDVRSVLSLSAVCRDLFTASNDPLLWRFLYLRDFRDNTVRVQDTDWK 314
Query: 97 GLYFQAFGGRRRCLSKSVAP 116
LY R+R + + +P
Sbjct: 315 ELY------RKRHIQRKESP 328
>gi|74229027 F-box only protein 7 isoform 1 [Homo sapiens]
Length = 522
Score = 31.6 bits (70), Expect = 0.97
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 41 LFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWR----RICRRLSPRLQDQDTK 96
+ P EL I L VR +++L CR + +WR R R + R+QD D K
Sbjct: 334 VLPLELKLRIFRLLDVRSVLSLSAVCRDLFTASNDPLLWRFLYLRDFRDNTVRVQDTDWK 393
Query: 97 GLYFQAFGGRRRCLSKSVAP 116
LY R+R + + +P
Sbjct: 394 ELY------RKRHIQRKESP 407
>gi|111185922 F-box protein 36 [Homo sapiens]
Length = 188
Score = 31.2 bits (69), Expect = 1.3
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 33 KGNPISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRI----CRRLSP 88
KG ++ +L+ IIS+L + D+ L QT F ++C + +W +I C ++P
Sbjct: 88 KGKFDFLERLSDDLLLTIISYLDLEDIARLCQTSHRFAKLCMSDKLWEQIVQSTCDTITP 147
Query: 89 RL----QDQDTKGLYF 100
+ +D + L+F
Sbjct: 148 DVRALAEDTGWRQLFF 163
>gi|22748931 F-box and leucine-rich repeat protein 14 [Homo
sapiens]
Length = 418
Score = 30.0 bits (66), Expect = 2.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 44 PELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRI-----CRRLSPRL 90
PEL+ I +L VRD Q C + + + VWR + RR +P L
Sbjct: 10 PELLAMIFGYLDVRDKGRAAQVCTAWRDAAYHKSVWRGVEAKLHLRRANPSL 61
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 30.0 bits (66), Expect = 2.8
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 249 LTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLRV 289
+ EEGKI+SLV++ +LDQ Q A K S HLRV
Sbjct: 12154 IKEEGKIHSLVLHNCRLDQTGGVDFQAANVKSS---AHLRV 12191
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 30.0 bits (66), Expect = 2.8
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 249 LTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLRV 289
+ EEGKI+SLV++ +LDQ Q A K S HLRV
Sbjct: 5849 IKEEGKIHSLVLHNCRLDQTGGVDFQAANVKSS---AHLRV 5886
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 30.0 bits (66), Expect = 2.8
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 249 LTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLRV 289
+ EEGKI+SLV++ +LDQ Q A K S HLRV
Sbjct: 5782 IKEEGKIHSLVLHNCRLDQTGGVDFQAANVKSS---AHLRV 5819
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 30.0 bits (66), Expect = 2.8
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 249 LTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLRV 289
+ EEGKI+SLV++ +LDQ Q A K S HLRV
Sbjct: 5657 IKEEGKIHSLVLHNCRLDQTGGVDFQAANVKSS---AHLRV 5694
>gi|67003566 F-box protein 48 [Homo sapiens]
Length = 155
Score = 30.0 bits (66), Expect = 2.8
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 23 SELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHE-VCDGEGVW-- 79
+ + E+++ + +L P E+ I S L +R L TCR +++ + + + +W
Sbjct: 19 NSVDAEKEKNESQNNFFELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKP 78
Query: 80 -----RRICRR 85
R +CRR
Sbjct: 79 HCMTVRAVCRR 89
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 29.6 bits (65), Expect = 3.7
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 12 RRVKRSCPSCGSELGVEEKRGK-GNPISIQLFPPELVEHIISFLPVRDLVALGQTCRYFH 70
RR +RS PS G + E G G P ++F PE EH+ S VALG Y
Sbjct: 699 RRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVKS-----AAVALGPAASY-- 751
Query: 71 EVCDGE 76
VC E
Sbjct: 752 -VCTPE 756
>gi|169218211 PREDICTED: similar to plectin 1, partial [Homo sapiens]
Length = 1369
Score = 29.3 bits (64), Expect = 4.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 57 RDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQ 91
R+L LG+ RY+ E D G W + RR ++Q
Sbjct: 1333 RELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQ 1367
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 29.3 bits (64), Expect = 4.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 57 RDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQ 91
R+L LG+ RY+ E D G W + RR ++Q
Sbjct: 1200 RELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQ 1234
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.139 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,582,397
Number of Sequences: 37866
Number of extensions: 535519
Number of successful extensions: 1517
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1430
Number of HSP's gapped (non-prelim): 100
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.