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Search of human proteins with 14917111
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14917111 adaptor-related protein complex 4, mu 1 subunit
[Homo sapiens]
(453 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14917111 adaptor-related protein complex 4, mu 1 subunit [Hom... 899 0.0
gi|14210504 adaptor-related protein complex 1, mu 1 subunit isof... 189 4e-48
gi|68799814 adaptor-related protein complex 2, mu 1 subunit isof... 183 2e-46
gi|14917109 adaptor-related protein complex 2, mu 1 subunit isof... 183 3e-46
gi|9506797 adaptor-related protein complex 1, mu 2 subunit [Homo... 182 5e-46
gi|194473724 adaptor-related protein complex 1, mu 1 subunit iso... 180 2e-45
gi|6912240 adaptor-related protein complex 3, mu 1 subunit [Homo... 111 2e-24
gi|46370095 adaptor-related protein complex 3, mu 1 subunit [Hom... 111 2e-24
gi|197209857 adaptor-related protein complex 3, mu 2 subunit [Ho... 104 1e-22
gi|5803000 adaptor-related protein complex 3, mu 2 subunit [Homo... 104 1e-22
gi|11863154 archain isoform 1 [Homo sapiens] 42 0.001
gi|26787993 stonin 1 [Homo sapiens] 40 0.003
gi|29553944 STON1-GTF2A1L protein [Homo sapiens] 40 0.003
gi|22027655 adaptor-related protein complex 1 sigma 2 subunit [H... 39 0.013
gi|4557471 adaptor-related protein complex 1, sigma 1 subunit [H... 38 0.017
gi|21361863 stonin 2 [Homo sapiens] 38 0.022
gi|88703051 adaptor-related protein complex 1, sigma 3 subunit [... 35 0.11
gi|13994335 Mix-like homeobox protein 1 [Homo sapiens] 34 0.24
gi|8659574 transcription factor E3 [Homo sapiens] 34 0.31
gi|4758316 ets variant gene 5 (ets-related molecule) [Homo sapiens] 32 1.5
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 31 2.6
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 31 2.6
gi|110227615 echinoderm microtubule associated protein like 3 [H... 31 2.6
gi|239752280 PREDICTED: similar to family with sequence similari... 30 3.4
gi|114431236 zinc finger protein 462 [Homo sapiens] 30 3.4
gi|210032463 family with sequence similarity 48, member B2 [Homo... 30 3.4
gi|190014615 hypothetical protein LOC157983 [Homo sapiens] 30 3.4
gi|214010212 archain isoform 2 [Homo sapiens] 30 4.5
gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens] 30 4.5
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 30 5.9
>gi|14917111 adaptor-related protein complex 4, mu 1 subunit [Homo
sapiens]
Length = 453
Score = 899 bits (2323), Expect = 0.0
Identities = 453/453 (100%), Positives = 453/453 (100%)
Query: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPVVMHHHGRHFIHIR 60
MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPVVMHHHGRHFIHIR
Sbjct: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPVVMHHHGRHFIHIR 60
Query: 61 HSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDYG 120
HSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDYG
Sbjct: 61 HSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDYG 120
Query: 121 YVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSD 180
YVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSD
Sbjct: 121 YVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSD 180
Query: 181 QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGKSE 240
QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGKSE
Sbjct: 181 QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGKSE 240
Query: 241 LRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFP 300
LRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFP
Sbjct: 241 LRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFP 300
Query: 301 SVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQKAELAEGA 360
SVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQKAELAEGA
Sbjct: 301 SVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQKAELAEGA 360
Query: 361 LRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQ 420
LRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQ
Sbjct: 361 LRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQ 420
Query: 421 VRFLRLAFRPCGNANPHKWVRHLSHSDAYVIRI 453
VRFLRLAFRPCGNANPHKWVRHLSHSDAYVIRI
Sbjct: 421 VRFLRLAFRPCGNANPHKWVRHLSHSDAYVIRI 453
>gi|14210504 adaptor-related protein complex 1, mu 1 subunit isoform
2 [Homo sapiens]
Length = 423
Score = 189 bits (480), Expect = 4e-48
Identities = 126/455 (27%), Positives = 224/455 (49%), Gaps = 42/455 (9%)
Query: 3 SQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPV---VMHHHGRHFIHI 59
S ++L KG LI +++RGD D++E+ + + +E + ++ H G F+ I
Sbjct: 4 SAVYVLDLKGKVLICRNYRGDV---DMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 60 RHSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDY 119
+H+ LYLV T+ +N + L ++ + +Y L E +I N ++YELLDE++D+
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 120 GYVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRS 179
GY QTT +++L+ +I E G + + P + + V S RS
Sbjct: 121 GYPQTTDSKILQEYITQE------------------GHKLETGAPRPPATVTNAV-SWRS 161
Query: 180 D--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVG 237
+ + +KNEVFLDV+E +++L+++NG++L+ ++ G I+++ FL E+R+GL ++
Sbjct: 162 EGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFD 221
Query: 238 KSELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFR 297
+ RG + +++V FH V L FE+ R + PP GE +M Y+L+ + P
Sbjct: 222 NTG-RGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVK---PLI 277
Query: 298 LFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQKAELA 357
SV R++ +K + +S A NV +H+P+P S + + K
Sbjct: 278 WIESVIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPE 337
Query: 358 EGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCS 417
+ W + GG + +P G P S+ FE+P T S
Sbjct: 338 NSEIVWSIKSFPGGKEYLMRAHFGLPSVEAEDKEGKP---------PISVKFEIPYFTTS 388
Query: 418 GLQVRFLRLAFRPCGNANPHKWVRHLSHSDAYVIR 452
G+QVR+L++ + A P WVR+++ + Y +R
Sbjct: 389 GIQVRYLKIIEKSGYQALP--WVRYITQNGDYQLR 421
>gi|68799814 adaptor-related protein complex 2, mu 1 subunit isoform
b [Homo sapiens]
Length = 433
Score = 183 bits (465), Expect = 2e-46
Identities = 130/464 (28%), Positives = 225/464 (48%), Gaps = 44/464 (9%)
Query: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPVVMHHHGRHFIHIR 60
MI FI + KG+ LI + +R D G V + SPV + F H++
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVT-NIARTSFFHVK 59
Query: 61 HSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDYG 120
S ++L T +NV+ + E L ++ ++ Y G + E I N L+YELLDE+LD+G
Sbjct: 60 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 119
Query: 121 YVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSD 180
Y Q + T L+ FI + + S+ + +QS++ S +
Sbjct: 120 YPQNSETGALKTFITQQGIKSQ--------------TKEEQSQIT-SQVTGQIGWRREGI 164
Query: 181 QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGK-- 238
+ ++NE+FLDV+E +++L++ G +L V G + +KS+L E + G+ ++ + K
Sbjct: 165 KYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG 224
Query: 239 -----SELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSP 293
+ I +D+ +FH V L +F+S R + PP GE +MRY+ + D+
Sbjct: 225 KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDI--I 282
Query: 294 LPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQK 353
LPFR+ P V+ + G +L+V + ++ + A + + +P P + + K
Sbjct: 283 LPFRVIPLVR-EVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 341
Query: 354 AELAEGALRWDLPRVQG--GSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFEL 411
+ +E A+ W + R+ G SQ+S ++ P++ A P P S++FE+
Sbjct: 342 YKASENAIVWKIKRMAGMKESQISAEIEL-------LPTNDKKKWARP----PISMNFEV 390
Query: 412 PRHTCSGLQVRFLRLAFRPCGNANPH---KWVRHLSHSDAYVIR 452
P SGL+VR+L++ F P N + H KWVR++ S Y R
Sbjct: 391 P-FAPSGLKVRYLKV-FEPKLNYSDHDVIKWVRYIGRSGIYETR 432
>gi|14917109 adaptor-related protein complex 2, mu 1 subunit isoform
a [Homo sapiens]
Length = 435
Score = 183 bits (464), Expect = 3e-46
Identities = 130/464 (28%), Positives = 225/464 (48%), Gaps = 42/464 (9%)
Query: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPVVMHHHGRHFIHIR 60
MI FI + KG+ LI + +R D G V + SPV + F H++
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVT-NIARTSFFHVK 59
Query: 61 HSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDYG 120
S ++L T +NV+ + E L ++ ++ Y G + E I N L+YELLDE+LD+G
Sbjct: 60 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 119
Query: 121 YVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSD 180
Y Q + T L+ FI + + S+ + +QS++ S +
Sbjct: 120 YPQNSETGALKTFITQQGIKSQ------------HQTKEEQSQIT-SQVTGQIGWRREGI 166
Query: 181 QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGK-- 238
+ ++NE+FLDV+E +++L++ G +L V G + +KS+L E + G+ ++ + K
Sbjct: 167 KYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG 226
Query: 239 -----SELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSP 293
+ I +D+ +FH V L +F+S R + PP GE +MRY+ + D+
Sbjct: 227 KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDI--I 284
Query: 294 LPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQK 353
LPFR+ P V+ + G +L+V + ++ + A + + +P P + + K
Sbjct: 285 LPFRVIPLVR-EVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 343
Query: 354 AELAEGALRWDLPRVQG--GSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFEL 411
+ +E A+ W + R+ G SQ+S ++ P++ A P P S++FE+
Sbjct: 344 YKASENAIVWKIKRMAGMKESQISAEIEL-------LPTNDKKKWARP----PISMNFEV 392
Query: 412 PRHTCSGLQVRFLRLAFRPCGNANPH---KWVRHLSHSDAYVIR 452
P SGL+VR+L++ F P N + H KWVR++ S Y R
Sbjct: 393 P-FAPSGLKVRYLKV-FEPKLNYSDHDVIKWVRYIGRSGIYETR 434
>gi|9506797 adaptor-related protein complex 1, mu 2 subunit [Homo
sapiens]
Length = 423
Score = 182 bits (462), Expect = 5e-46
Identities = 131/453 (28%), Positives = 221/453 (48%), Gaps = 38/453 (8%)
Query: 3 SQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPVVMHHHGR-HFIHIRH 61
S FIL KG PLI ++++GD + E F L + + + HG+ HF+ I+H
Sbjct: 4 SAVFILDVKGKPLISRNYKGDVAMSKI-EHFMPLLVQREEEGALAPLLSHGQVHFLWIKH 62
Query: 62 SGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDYGY 121
S LYLV TTS+N + + L + + +Y L E +I N +VYELLDE++D+G+
Sbjct: 63 SNLYLVATTSKNANASLVYSFLYKTIEVFCEYFKELEEESIRDNFVIVYELLDELMDFGF 122
Query: 122 VQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSD- 180
QTT +++L+ +I ++ ET +S+V P+ + +S RS+
Sbjct: 123 PQTTDSKILQEYITQQS----------------NKLETGKSRVPPTVTNA---VSWRSEG 163
Query: 181 -QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGKS 239
+ +KNEVF+DV+E +++L+ +NGS+L ++ G I+LK FL E+R+GL + +
Sbjct: 164 IKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELT 223
Query: 240 ELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLF 299
R + +++V FH V L F++ R + PP G+ +M Y+LS + P
Sbjct: 224 G-RSKNKSVELEDVKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVK---PLIWI 279
Query: 300 PSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQKAELAEG 359
SV R+++ +K + +S A V + +P+P S + S K
Sbjct: 280 ESVIEKFSHSRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPERN 339
Query: 360 ALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGL 419
+ W + GG + +P G P + FE+P T SG+
Sbjct: 340 VVIWSIKSFPGGKEYLMRAHFGLPSVEKEEVEGRP---------PIGVKFEIPYFTVSGI 390
Query: 420 QVRFLRLAFRPCGNANPHKWVRHLSHSDAYVIR 452
QVR++++ + A P WVR+++ S Y +R
Sbjct: 391 QVRYMKIIEKSGYQALP--WVRYITQSGDYQLR 421
>gi|194473724 adaptor-related protein complex 1, mu 1 subunit
isoform 1 [Homo sapiens]
Length = 435
Score = 180 bits (457), Expect = 2e-45
Identities = 126/467 (26%), Positives = 224/467 (47%), Gaps = 54/467 (11%)
Query: 3 SQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPV---VMHHHGRHFIHI 59
S ++L KG LI +++RGD D++E+ + + +E + ++ H G F+ I
Sbjct: 4 SAVYVLDLKGKVLICRNYRGDV---DMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 60 RHSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDY 119
+H+ LYLV T+ +N + L ++ + +Y L E +I N ++YELLDE++D+
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 120 GYVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRS 179
GY QTT +++L+ +I E G + + P + + V S RS
Sbjct: 121 GYPQTTDSKILQEYITQE------------------GHKLETGAPRPPATVTNAV-SWRS 161
Query: 180 D--QSQKNEVFLDVVERLSVL------------IASNGSLLKVDVQGEIRLKSFLPSGSE 225
+ + +KNEVFLDV+E +++L +++NG++L+ ++ G I+++ FL E
Sbjct: 162 EGIKYRKNEVFLDVIESVNLLGKYPGVGWLGHTVSANGNVLRSEIVGSIKMRVFLSGMPE 221
Query: 226 MRIGLTEEFCVGKSELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQ 285
+R+GL ++ + RG + +++V FH V L FE+ R + PP GE +M Y+
Sbjct: 222 LRLGLNDKVLFDNTG-RGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYR 280
Query: 286 LSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQ 345
L+ + P SV R++ +K + +S A NV +H+P+P S
Sbjct: 281 LNTHVK---PLIWIESVIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKF 337
Query: 346 ELSSPEQKAELAEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPA 405
+ + K + W + GG + +P G P
Sbjct: 338 KTTVGSVKWVPENSEIVWSIKSFPGGKEYLMRAHFGLPSVEAEDKEGKP---------PI 388
Query: 406 SLSFELPRHTCSGLQVRFLRLAFRPCGNANPHKWVRHLSHSDAYVIR 452
S+ FE+P T SG+QVR+L++ + A P WVR+++ + Y +R
Sbjct: 389 SVKFEIPYFTTSGIQVRYLKIIEKSGYQALP--WVRYITQNGDYQLR 433
>gi|6912240 adaptor-related protein complex 3, mu 1 subunit [Homo
sapiens]
Length = 418
Score = 111 bits (277), Expect = 2e-24
Identities = 104/460 (22%), Positives = 190/460 (41%), Gaps = 51/460 (11%)
Query: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDES--PVVMHHHGRHFIH 58
MI F+++ GD + K ++ + V + F+ E+ PV+ H + I
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVS-QSVCDYFFEAQEKAADVENVPPVISTPH-HYLIS 58
Query: 59 IRHSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLD 118
I L+ V V P ++E L R+A DY G E I NV +VYELL+E+LD
Sbjct: 59 IYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLD 118
Query: 119 YGYVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSR 178
G+ T + +L+ I+ ++ S V + P+ S
Sbjct: 119 NGFPLATESNILKELIKPPTILR--------SVVNSITGSSNVGDTLPTGQLSNIPWRRA 170
Query: 179 SDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGK 238
+ NE + DVVE + +I +GS + ++QG I L ++ +
Sbjct: 171 GVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSF-------- 222
Query: 239 SELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRL 298
P + +D+VSFH + +ES R+L PP G ++ Y++S +P +
Sbjct: 223 -----MNPRL-LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYV 276
Query: 299 FPSVQWDRGS--GRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQKAEL 356
S+ + S GR + + + ++ + + V +H +P+ V++++ + +
Sbjct: 277 KHSISFKENSSCGRFDITIGPKQNMGKTIEGITVTVH--MPKVVLNMNLTPTQGSYTFDP 334
Query: 357 AEGALRWDLPRV--QGGSQLSGL--FQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELP 412
L WD+ ++ Q L GL Q P P PS ++ F++
Sbjct: 335 VTKVLTWDVGKITPQKLPSLKGLVNLQSGAPKPEENPS--------------LNIQFKIQ 380
Query: 413 RHTCSGLQVRFLRLAFRPCGNANPHKWVRHLSHSDAYVIR 452
+ SGL+V L + P K V++++ + + +R
Sbjct: 381 QLAISGLKVNRLDMYGE---KYKPFKGVKYVTKAGKFQVR 417
>gi|46370095 adaptor-related protein complex 3, mu 1 subunit [Homo
sapiens]
Length = 418
Score = 111 bits (277), Expect = 2e-24
Identities = 104/460 (22%), Positives = 190/460 (41%), Gaps = 51/460 (11%)
Query: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDES--PVVMHHHGRHFIH 58
MI F+++ GD + K ++ + V + F+ E+ PV+ H + I
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVS-QSVCDYFFEAQEKAADVENVPPVISTPH-HYLIS 58
Query: 59 IRHSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLD 118
I L+ V V P ++E L R+A DY G E I NV +VYELL+E+LD
Sbjct: 59 IYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLD 118
Query: 119 YGYVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSR 178
G+ T + +L+ I+ ++ S V + P+ S
Sbjct: 119 NGFPLATESNILKELIKPPTILR--------SVVNSITGSSNVGDTLPTGQLSNIPWRRA 170
Query: 179 SDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGK 238
+ NE + DVVE + +I +GS + ++QG I L ++ +
Sbjct: 171 GVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSF-------- 222
Query: 239 SELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRL 298
P + +D+VSFH + +ES R+L PP G ++ Y++S +P +
Sbjct: 223 -----MNPRL-LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYV 276
Query: 299 FPSVQWDRGS--GRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQKAEL 356
S+ + S GR + + + ++ + + V +H +P+ V++++ + +
Sbjct: 277 KHSISFKENSSCGRFDITIGPKQNMGKTIEGITVTVH--MPKVVLNMNLTPTQGSYTFDP 334
Query: 357 AEGALRWDLPRV--QGGSQLSGL--FQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELP 412
L WD+ ++ Q L GL Q P P PS ++ F++
Sbjct: 335 VTKVLTWDVGKITPQKLPSLKGLVNLQSGAPKPEENPS--------------LNIQFKIQ 380
Query: 413 RHTCSGLQVRFLRLAFRPCGNANPHKWVRHLSHSDAYVIR 452
+ SGL+V L + P K V++++ + + +R
Sbjct: 381 QLAISGLKVNRLDMYGE---KYKPFKGVKYVTKAGKFQVR 417
>gi|197209857 adaptor-related protein complex 3, mu 2 subunit [Homo
sapiens]
Length = 418
Score = 104 bits (260), Expect = 1e-22
Identities = 104/457 (22%), Positives = 188/457 (41%), Gaps = 45/457 (9%)
Query: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDES--PVVMHHHGRHFIH 58
MI F+++S GD + K ++ R V + F+ E+ PV+ H
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVS-RSVCDYFFEAQERATEAENVPPVIPTPHHYLLSV 59
Query: 59 IRHSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLD 118
RH ++ V +E V P ++E L R+ DY G E I NV +VYE+L+E+LD
Sbjct: 60 YRHKIFFVAVIQTE-VPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLD 118
Query: 119 YGYVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSR 178
G+ T + +L+ I+ ++ + V T P+ S
Sbjct: 119 NGFPLATESNILKELIKPPTILR--------TVVNTITGSTNVGDQLPTGQLSVVPWRRT 170
Query: 179 SDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGK 238
+ NE + DV+E + +I +GS + ++QG I L ++ +
Sbjct: 171 GVKYTNNEAYFDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSF-------- 222
Query: 239 SELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRL 298
P + +D+VSFH V +ES RIL PP G ++ Y +S +P +
Sbjct: 223 -----MNPRL-LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYV 276
Query: 299 FPSVQWDRGS--GRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQKAEL 356
++ + S GR ++ + + + + + V +P+GV+++S S +
Sbjct: 277 KHNISFRDSSSLGRFEITVGPKQTMGKTIEGVTVTSQ--MPKGVLNMSLTPSQGTHTFDP 334
Query: 357 AEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPA-SLSFELPRHT 415
L WD+ ++ +P G S L AS P +L F++ +
Sbjct: 335 VTKMLSWDVGKIN---------PQKLPSLKGTMS--LQAGASKPDENPTINLQFKIQQLA 383
Query: 416 CSGLQVRFLRLAFRPCGNANPHKWVRHLSHSDAYVIR 452
SGL+V L + P K +++++ + + +R
Sbjct: 384 ISGLKVNRLDMYGE---KYKPFKGIKYMTKAGKFQVR 417
>gi|5803000 adaptor-related protein complex 3, mu 2 subunit [Homo
sapiens]
Length = 418
Score = 104 bits (260), Expect = 1e-22
Identities = 104/457 (22%), Positives = 188/457 (41%), Gaps = 45/457 (9%)
Query: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDES--PVVMHHHGRHFIH 58
MI F+++S GD + K ++ R V + F+ E+ PV+ H
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVS-RSVCDYFFEAQERATEAENVPPVIPTPHHYLLSV 59
Query: 59 IRHSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLD 118
RH ++ V +E V P ++E L R+ DY G E I NV +VYE+L+E+LD
Sbjct: 60 YRHKIFFVAVIQTE-VPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLD 118
Query: 119 YGYVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSR 178
G+ T + +L+ I+ ++ + V T P+ S
Sbjct: 119 NGFPLATESNILKELIKPPTILR--------TVVNTITGSTNVGDQLPTGQLSVVPWRRT 170
Query: 179 SDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGK 238
+ NE + DV+E + +I +GS + ++QG I L ++ +
Sbjct: 171 GVKYTNNEAYFDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSF-------- 222
Query: 239 SELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRL 298
P + +D+VSFH V +ES RIL PP G ++ Y +S +P +
Sbjct: 223 -----MNPRL-LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYV 276
Query: 299 FPSVQWDRGS--GRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQKAEL 356
++ + S GR ++ + + + + + V +P+GV+++S S +
Sbjct: 277 KHNISFRDSSSLGRFEITVGPKQTMGKTIEGVTVTSQ--MPKGVLNMSLTPSQGTHTFDP 334
Query: 357 AEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPA-SLSFELPRHT 415
L WD+ ++ +P G S L AS P +L F++ +
Sbjct: 335 VTKMLSWDVGKIN---------PQKLPSLKGTMS--LQAGASKPDENPTINLQFKIQQLA 383
Query: 416 CSGLQVRFLRLAFRPCGNANPHKWVRHLSHSDAYVIR 452
SGL+V L + P K +++++ + + +R
Sbjct: 384 ISGLKVNRLDMYGE---KYKPFKGIKYMTKAGKFQVR 417
>gi|11863154 archain isoform 1 [Homo sapiens]
Length = 511
Score = 41.6 bits (96), Expect = 0.001
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 64 LYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDYGYVQ 123
LY+V+ T++N + LE L + ++ +YC +L E IS + + DE++ GY +
Sbjct: 64 LYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRE 123
Query: 124 TTSTEMLRNFIQTEAVVSKPF 144
+ +R F + ++ K F
Sbjct: 124 NVNLAQIRTFTEMDSHEEKVF 144
>gi|26787993 stonin 1 [Homo sapiens]
Length = 735
Score = 40.4 bits (93), Expect = 0.003
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 20/197 (10%)
Query: 173 PVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLT- 231
P +S ++ E+ L++V+ + G ++ V +I F+ E + L
Sbjct: 401 PAVSKPKKNYEEQEISLEIVDNFWGKVTKEGKFVESAVITQIYCLCFVNGNLECFLTLND 460
Query: 232 -------EEFCVGKSELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQG-ELTVMR 283
E + SE +G I + + FH VN+ EFE RI++ P +MR
Sbjct: 461 LELPKRDESYYEKDSEKKG----IDILDYHFHKCVNVQEFEQSRIIKFVPLDACRFELMR 516
Query: 284 YQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQA------LNVRLHLPLP 337
++ + LPF L V LQ ++ + S A N+R+H P+P
Sbjct: 517 FKTLYN-GDNLPFSLKSVVVVQGAYVELQAFVNMASLAQRSSYAGSLRSCDNIRIHFPVP 575
Query: 338 RGVVSLSQELSSPEQKA 354
+ ++ QK+
Sbjct: 576 SQWIKALWTMNLQRQKS 592
>gi|29553944 STON1-GTF2A1L protein [Homo sapiens]
Length = 1182
Score = 40.4 bits (93), Expect = 0.003
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 20/197 (10%)
Query: 173 PVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLT- 231
P +S ++ E+ L++V+ + G ++ V +I F+ E + L
Sbjct: 401 PAVSKPKKNYEEQEISLEIVDNFWGKVTKEGKFVESAVITQIYCLCFVNGNLECFLTLND 460
Query: 232 -------EEFCVGKSELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQG-ELTVMR 283
E + SE +G I + + FH VN+ EFE RI++ P +MR
Sbjct: 461 LELPKRDESYYEKDSEKKG----IDILDYHFHKCVNVQEFEQSRIIKFVPLDACRFELMR 516
Query: 284 YQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQA------LNVRLHLPLP 337
++ + LPF L V LQ ++ + S A N+R+H P+P
Sbjct: 517 FKTLYN-GDNLPFSLKSVVVVQGAYVELQAFVNMASLAQRSSYAGSLRSCDNIRIHFPVP 575
Query: 338 RGVVSLSQELSSPEQKA 354
+ ++ QK+
Sbjct: 576 SQWIKALWTMNLQRQKS 592
>gi|22027655 adaptor-related protein complex 1 sigma 2 subunit [Homo
sapiens]
Length = 157
Score = 38.5 bits (88), Expect = 0.013
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 57 IHIRHSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEV 116
++ R++ LY + + LE++ R LL Y GS+ E I N Y +LDE
Sbjct: 57 VYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEF 116
Query: 117 LDYGYVQTTSTEMLRNFIQ 135
L G VQ TS + + I+
Sbjct: 117 LLGGEVQETSKKNVLKAIE 135
>gi|4557471 adaptor-related protein complex 1, sigma 1 subunit [Homo
sapiens]
Length = 158
Score = 38.1 bits (87), Expect = 0.017
Identities = 26/79 (32%), Positives = 37/79 (46%)
Query: 57 IHIRHSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEV 116
++ R++ LY + LEL+ R LL Y GS+ E I N Y +LDE
Sbjct: 58 VYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEF 117
Query: 117 LDYGYVQTTSTEMLRNFIQ 135
L G VQ TS + + I+
Sbjct: 118 LMGGDVQDTSKKSVLKAIE 136
>gi|21361863 stonin 2 [Homo sapiens]
Length = 905
Score = 37.7 bits (86), Expect = 0.022
Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 184 KNEVFLDVVERLSVLIAS-NGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGKSELR 242
+ E+ +DV + S +++ + +L+ V I + SFL +E R+GL + G +
Sbjct: 568 EEEITVDVRDEFSGIVSKGDNQILQHHVLTRIHILSFLSGLAECRLGLNDILVKGNEIVL 627
Query: 243 GYG-------PGIRVDEVSFHSSVNLDEFESHRILRLQPPQG-ELTVMRYQLSDDLPSPL 294
I++ E FH V+ D F + R++ P +MR++ + L
Sbjct: 628 RQDIMPTTTTKWIKLHECRFHGCVDEDVFHNSRVILFNPLDACRFELMRFR-TVFAEKTL 686
Query: 295 PFRLFPSVQWDRGSGRLQVYLKLRC------DLLSKSQALNVRLHLPLP-RGVVSLSQE- 346
PF L + + +Q +L++ D L++ NV + P+P V + +E
Sbjct: 687 PFTLRTATSVNGAEVEVQSWLRMSTGFSANRDPLTQVPCENVMIRYPVPSEWVKNFRRES 746
Query: 347 -LSSPEQKAELAEGA 360
L KA++ GA
Sbjct: 747 VLGEKSLKAKVNRGA 761
>gi|88703051 adaptor-related protein complex 1, sigma 3 subunit
[Homo sapiens]
Length = 154
Score = 35.4 bits (80), Expect = 0.11
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 57 IHIRHSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEV 116
++ R++ LY + LE++ R LL Y G++ E I N Y +LDE
Sbjct: 58 VYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEF 117
Query: 117 LDYGYVQTTSTEM 129
+ G +Q TS ++
Sbjct: 118 IIGGEIQETSKKI 130
>gi|13994335 Mix-like homeobox protein 1 [Homo sapiens]
Length = 232
Score = 34.3 bits (77), Expect = 0.24
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 366 PRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQVRFLR 425
P G + +G D PGP PP L + A P G S S R + S Q++ L
Sbjct: 44 PAGPGPATFAGFLGRD-PGPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLE 102
Query: 426 LAFR 429
L FR
Sbjct: 103 LVFR 106
>gi|8659574 transcription factor E3 [Homo sapiens]
Length = 575
Score = 33.9 bits (76), Expect = 0.31
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 25/131 (19%)
Query: 283 RYQLSD---DLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRG 339
R+ ++D +L + +P P ++W++G+ LK D + K Q R
Sbjct: 359 RFNINDRIKELGTLIPKSSDPEMRWNKGT-----ILKASVDYIRKLQKEQQR-------- 405
Query: 340 VVSLSQELSSPEQKAELAEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASP 399
S++L S ++ E A +L+ + ++ +Q+ GL P PP P L+T+++
Sbjct: 406 ----SKDLESRQRSLEQANRSLQLRIQELELQAQIHGL-----PVPPTPGLLSLATTSAS 456
Query: 400 LGLGPASLSFE 410
L P L E
Sbjct: 457 DSLKPEQLDIE 467
>gi|4758316 ets variant gene 5 (ets-related molecule) [Homo sapiens]
Length = 510
Score = 31.6 bits (70), Expect = 1.5
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 377 LFQMDVPGPPGPPSHGLSTSASPLGL 402
L++ VPG PGPP+HG SP+G+
Sbjct: 270 LYEHGVPGMPGPPAHGFQ---SPMGI 292
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 30.8 bits (68), Expect = 2.6
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 383 PGPPGPPSHGLSTSASPLGLGP 404
PGPPGPP G+ SA GLGP
Sbjct: 1208 PGPPGPPGPGIDMSAF-AGLGP 1228
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 30.8 bits (68), Expect = 2.6
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 383 PGPPGPPSHGLSTSASPLGLGP 404
PGPPGPP G+ SA GLGP
Sbjct: 1139 PGPPGPPGPGIDMSAF-AGLGP 1159
>gi|110227615 echinoderm microtubule associated protein like 3 [Homo
sapiens]
Length = 896
Score = 30.8 bits (68), Expect = 2.6
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 335 PLPRGVVSLSQELSSPEQKAELAEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLS 394
P + SLSQ L EQ+ EL + AL L ++ S L P PPG
Sbjct: 11 PAREALQSLSQRLRVQEQEMELVKAALAEALRLLRLQVPPSSLQGSGTPAPPG------D 64
Query: 395 TSASPLGLGPASLSFELPRHTCSGLQVRFLRLAFRPCGNAN 435
+ A+P GL P + R T + +V L+ + P G +N
Sbjct: 65 SLAAPPGLPPTCTPSLVSRGTQTETEVE-LKSSPGPPGLSN 104
>gi|239752280 PREDICTED: similar to family with sequence similarity
48, member B2 [Homo sapiens]
Length = 779
Score = 30.4 bits (67), Expect = 3.4
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 335 PLPRGVVSLSQELSSPEQKAELAEGALRWDLPR--VQGGSQLSGLFQMDVPGPPGP 388
P P+ + +Q L +Q LA GA++ P VQ GSQL G + P PP P
Sbjct: 724 PQPQQIQLQTQPLRVLQQPVFLATGAVQIVQPHPGVQAGSQLVGQRKGGKPTPPAP 779
>gi|114431236 zinc finger protein 462 [Homo sapiens]
Length = 2506
Score = 30.4 bits (67), Expect = 3.4
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 308 SGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQK--AELAEGALRWDL 365
SG+ VY C KS +L + H G S ++S + + L EG + ++
Sbjct: 464 SGKTAVYKCDECPFTCKS-SLKLGAHKQCHTGTTSDWDAVNSQSESISSSLNEGVVSYES 522
Query: 366 PRVQG---GSQLSGLFQMDVPGPPGPPSHGLSTSASPL 400
+ G G L L Q P PP PP + PL
Sbjct: 523 SSINGRKSGVMLDPLQQQQPPQPPPPPPPPPPSQPQPL 560
>gi|210032463 family with sequence similarity 48, member B2 [Homo
sapiens]
Length = 817
Score = 30.4 bits (67), Expect = 3.4
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 335 PLPRGVVSLSQELSSPEQKAELAEGALRWDLPR--VQGGSQLSGLFQMDVPGPPGP 388
P P+ + +Q L +Q LA GA++ P VQ GSQL G + P PP P
Sbjct: 762 PQPQQIQLQTQPLRVLQQPVFLATGAVQIVQPHPGVQAGSQLVGQRKGGKPTPPAP 817
>gi|190014615 hypothetical protein LOC157983 [Homo sapiens]
Length = 295
Score = 30.4 bits (67), Expect = 3.4
Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 383 PGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQVRFLRLA 427
PG PG T GLGP S E P HT +GL R LR A
Sbjct: 77 PGAPGLRRAPPRTRMDSSGLGPCS---EAPLHTSAGLSGRNLRAA 118
>gi|214010212 archain isoform 2 [Homo sapiens]
Length = 423
Score = 30.0 bits (66), Expect = 4.5
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 89 LLGDYCGSLGEGTISRNVALVYELLDEVLDYGYVQTTSTEMLRNFIQTEAVVSKPF 144
++ +YC +L E IS + + DE++ GY + + +R F + ++ K F
Sbjct: 1 MIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVF 56
>gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]
Length = 4861
Score = 30.0 bits (66), Expect = 4.5
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 66 LVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDYGY-VQT 124
L ++SEN P L ELL L L +C S +VAL+++ L +L + + +
Sbjct: 972 LGTSSSENSQPAHLHELLCSLQKQLLAFCHINNISENSSSVALLHKHLQLLLPHATDIYS 1031
Query: 125 TSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLS 176
S +L+ +V K + +S+ G + S + + +RP+LS
Sbjct: 1032 RSANLLKESPWNGSVGEKLRDVIYVSAAGSMLCQIVNSLLLLPVSVARPLLS 1083
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 29.6 bits (65), Expect = 5.9
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 366 PRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELP 412
P + G QLS P PP P L ++SP+G G AS LP
Sbjct: 1862 PGLMGTEQLSTELDSKTPTPPAPTL--LKMTSSPVGPGTASAGPSLP 1906
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,259,733
Number of Sequences: 37866
Number of extensions: 903369
Number of successful extensions: 3747
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3671
Number of HSP's gapped (non-prelim): 63
length of query: 453
length of database: 18,247,518
effective HSP length: 106
effective length of query: 347
effective length of database: 14,233,722
effective search space: 4939101534
effective search space used: 4939101534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.