Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 14717403
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14717403 protocadherin alpha subfamily C, 1 isoform 2
precursor [Homo sapiens]
(818 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14717403 protocadherin alpha subfamily C, 1 isoform 2 precurs... 1619 0.0
gi|14717401 protocadherin alpha subfamily C, 1 isoform 1 precurs... 1605 0.0
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 595 e-170
gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precur... 595 e-170
gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur... 595 e-170
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 595 e-170
gi|9256600 protocadherin alpha subfamily C, 2 isoform 1 precurso... 587 e-167
gi|14165431 protocadherin alpha subfamily C, 2 isoform 2 precurs... 587 e-167
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 583 e-166
gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precur... 583 e-166
gi|14277682 protocadherin gamma subfamily C, 4 isoform 2 precurs... 579 e-165
gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precurs... 579 e-165
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 575 e-164
gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precurs... 575 e-164
gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precurs... 574 e-163
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 574 e-163
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs... 572 e-163
gi|7662056 protocadherin gamma subfamily A, 8 isoform 2 precurso... 572 e-163
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 571 e-163
gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs... 571 e-163
gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precurs... 570 e-162
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 570 e-162
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs... 567 e-161
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 567 e-161
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 563 e-160
gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precurs... 563 e-160
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs... 563 e-160
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 563 e-160
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 562 e-160
gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precurs... 562 e-160
>gi|14717403 protocadherin alpha subfamily C, 1 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 1619 bits (4193), Expect = 0.0
Identities = 818/818 (100%), Positives = 818/818 (100%)
Query: 1 MVGCGVAVLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSS 60
MVGCGVAVLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSS
Sbjct: 1 MVGCGVAVLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSS 60
Query: 61 HRELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDN 120
HRELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDN
Sbjct: 61 HRELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDN 120
Query: 121 SPLFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGS 180
SPLFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGS
Sbjct: 121 SPLFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGS 180
Query: 181 EYPELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRT 240
EYPELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRT
Sbjct: 181 EYPELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRT 240
Query: 241 KVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG 300
KVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG
Sbjct: 241 KVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG 300
Query: 301 PPETLLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIA 360
PPETLLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIA
Sbjct: 301 PPETLLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIA 360
Query: 361 LFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDS 420
LFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDS
Sbjct: 361 LFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDS 420
Query: 421 GSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLV 480
GSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLV
Sbjct: 421 GSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLV 480
Query: 481 SYELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVT 540
SYELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVT
Sbjct: 481 SYELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVT 540
Query: 541 INLFVVDRNDNYPVILFPLPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHI 600
INLFVVDRNDNYPVILFPLPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHI
Sbjct: 541 INLFVVDRNDNYPVILFPLPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHI 600
Query: 601 SRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSV 660
SRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSV
Sbjct: 601 SRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSV 660
Query: 661 PQLLPDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCR 720
PQLLPDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCR
Sbjct: 661 PQLLPDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCR 720
Query: 721 STEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLLLRGEYNAADL 780
STEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLLLRGEYNAADL
Sbjct: 721 STEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLLLRGEYNAADL 780
Query: 781 RNLATGVGLNLPISCIQIRNRKGDHANVNAMVSKFYGI 818
RNLATGVGLNLPISCIQIRNRKGDHANVNAMVSKFYGI
Sbjct: 781 RNLATGVGLNLPISCIQIRNRKGDHANVNAMVSKFYGI 818
>gi|14717401 protocadherin alpha subfamily C, 1 isoform 1 precursor
[Homo sapiens]
Length = 963
Score = 1605 bits (4157), Expect = 0.0
Identities = 811/811 (100%), Positives = 811/811 (100%)
Query: 1 MVGCGVAVLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSS 60
MVGCGVAVLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSS
Sbjct: 1 MVGCGVAVLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSS 60
Query: 61 HRELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDN 120
HRELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDN
Sbjct: 61 HRELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDN 120
Query: 121 SPLFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGS 180
SPLFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGS
Sbjct: 121 SPLFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGS 180
Query: 181 EYPELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRT 240
EYPELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRT
Sbjct: 181 EYPELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRT 240
Query: 241 KVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG 300
KVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG
Sbjct: 241 KVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG 300
Query: 301 PPETLLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIA 360
PPETLLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIA
Sbjct: 301 PPETLLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIA 360
Query: 361 LFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDS 420
LFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDS
Sbjct: 361 LFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDS 420
Query: 421 GSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLV 480
GSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLV
Sbjct: 421 GSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLV 480
Query: 481 SYELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVT 540
SYELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVT
Sbjct: 481 SYELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVT 540
Query: 541 INLFVVDRNDNYPVILFPLPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHI 600
INLFVVDRNDNYPVILFPLPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHI
Sbjct: 541 INLFVVDRNDNYPVILFPLPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHI 600
Query: 601 SRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSV 660
SRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSV
Sbjct: 601 SRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSV 660
Query: 661 PQLLPDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCR 720
PQLLPDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCR
Sbjct: 661 PQLLPDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCR 720
Query: 721 STEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLLLRGEYNAADL 780
STEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLLLRGEYNAADL
Sbjct: 721 STEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLLLRGEYNAADL 780
Query: 781 RNLATGVGLNLPISCIQIRNRKGDHANVNAM 811
RNLATGVGLNLPISCIQIRNRKGDHANVNAM
Sbjct: 781 RNLATGVGLNLPISCIQIRNRKGDHANVNAM 811
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 595 bits (1535), Expect = e-170
Identities = 323/710 (45%), Positives = 449/710 (63%), Gaps = 8/710 (1%)
Query: 5 GVAVLCLW--VSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHR 62
G+ +LCL+ + A A Q+ YS+PEE E+G VGN+S DL L ++ R R +S R
Sbjct: 16 GLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVSRGR 75
Query: 63 ELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSP 122
F ++ SG+L+ DRE+LC A CV+++++++ED ++L I I V D NDN+P
Sbjct: 76 TQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAP 135
Query: 123 LFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEY 182
F A ++ + I E + G RF LP A D D G N + SY LSP++HF L + SR +G +Y
Sbjct: 136 KFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKY 195
Query: 183 PELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKV 242
PELVLE +LDRE+ A H LVLTA DGG P RSG V++ V D NDNAPVF YR V
Sbjct: 196 PELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSV 255
Query: 243 PETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPP 302
PE P GT L V A D DEG+NGEV YS +L +F ++ +GE++++ +L
Sbjct: 256 PENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLL-KFQLNKYTGEIKISENLDYE 314
Query: 303 ET-LLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIAL 361
ET E I+A D G + +TAK+L+ V DVND++PEL +L +PV ED+ GTV+AL
Sbjct: 315 ETGFYEIEIQAEDGGAY--LATAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVAL 372
Query: 362 FSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSG 421
+V D D + NG+V C + + PF+L S D+YY L+I LDREQ+S Y + +TA+D G
Sbjct: 373 LNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGG 432
Query: 422 SPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVS 481
SPPLST + VAD+NDN P F Q ++ ENN GAS+ V A DPD +N +
Sbjct: 433 SPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQII 492
Query: 482 YELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTI 541
Y L + +G SS +++ S +G + A SFD+EQ QV D G PP S+ V++
Sbjct: 493 YSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSL 552
Query: 542 NLFVVDRNDNYPVILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHI 600
+LFV+D+NDN P IL+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAWLSY +
Sbjct: 553 SLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRL 612
Query: 601 SRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSV 660
+AS+ LF + + GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++S+
Sbjct: 613 LKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSI 672
Query: 661 PQLLPDFEDVWEP-GGQLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQ 709
PQ+L D P + S LYLV+A+A +S +FL ++ + +L +
Sbjct: 673 PQVLADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRR 722
>gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precursor
[Homo sapiens]
Length = 850
Score = 595 bits (1535), Expect = e-170
Identities = 323/710 (45%), Positives = 449/710 (63%), Gaps = 8/710 (1%)
Query: 5 GVAVLCLW--VSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHR 62
G+ +LCL+ + A A Q+ YS+PEE E+G VGN+S DL L ++ R R +S R
Sbjct: 16 GLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVSRGR 75
Query: 63 ELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSP 122
F ++ SG+L+ DRE+LC A CV+++++++ED ++L I I V D NDN+P
Sbjct: 76 TQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAP 135
Query: 123 LFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEY 182
F A ++ + I E + G RF LP A D D G N + SY LSP++HF L + SR +G +Y
Sbjct: 136 KFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKY 195
Query: 183 PELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKV 242
PELVLE +LDRE+ A H LVLTA DGG P RSG V++ V D NDNAPVF YR V
Sbjct: 196 PELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSV 255
Query: 243 PETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPP 302
PE P GT L V A D DEG+NGEV YS +L +F ++ +GE++++ +L
Sbjct: 256 PENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLL-KFQLNKYTGEIKISENLDYE 314
Query: 303 ET-LLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIAL 361
ET E I+A D G + +TAK+L+ V DVND++PEL +L +PV ED+ GTV+AL
Sbjct: 315 ETGFYEIEIQAEDGGAY--LATAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVAL 372
Query: 362 FSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSG 421
+V D D + NG+V C + + PF+L S D+YY L+I LDREQ+S Y + +TA+D G
Sbjct: 373 LNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGG 432
Query: 422 SPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVS 481
SPPLST + VAD+NDN P F Q ++ ENN GAS+ V A DPD +N +
Sbjct: 433 SPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQII 492
Query: 482 YELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTI 541
Y L + +G SS +++ S +G + A SFD+EQ QV D G PP S+ V++
Sbjct: 493 YSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSL 552
Query: 542 NLFVVDRNDNYPVILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHI 600
+LFV+D+NDN P IL+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAWLSY +
Sbjct: 553 SLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRL 612
Query: 601 SRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSV 660
+AS+ LF + + GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++S+
Sbjct: 613 LKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSI 672
Query: 661 PQLLPDFEDVWEP-GGQLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQ 709
PQ+L D P + S LYLV+A+A +S +FL ++ + +L +
Sbjct: 673 PQVLADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRR 722
>gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor
[Homo sapiens]
Length = 837
Score = 595 bits (1534), Expect = e-170
Identities = 328/771 (42%), Positives = 473/771 (61%), Gaps = 24/771 (3%)
Query: 8 VLCLWVSC--GAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELY 65
+LC+++ G A Q+ YSVPEETE+G VGN+S DL L ++ R R +S +
Sbjct: 16 LLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKTQL 75
Query: 66 FGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFP 125
F V+ SG+L+ DRE+LC ++C L +L++ED L+++ + + ++D NDN+P F
Sbjct: 76 FAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPSFQ 135
Query: 126 AGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPEL 185
+V++ + E PGARF LPNA+D D G N + SY LSP+ +F L + R DG++ PEL
Sbjct: 136 EDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPEL 195
Query: 186 VLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPET 245
VLE +LDRE+ A HLL+LTA DGG P R G + ++V+D ND+ P+F +SVYR VPE
Sbjct: 196 VLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPEN 255
Query: 246 APNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG-PPET 304
+GT + V A DPDEG NGEV YS N +++ F + ++GEVQV SL
Sbjct: 256 ISSGTRVLMVNATDPDEGINGEVMYSFRN-MESKASEIFQLDSQTGEVQVRGSLDFEKYR 314
Query: 305 LLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSV 364
E I+ +D G GL +T +L+ V DVND+APE+ + N + E++ PGTVIAL +V
Sbjct: 315 FYEMEIQGQDGG--GLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNV 372
Query: 365 KDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPP 424
+D+D NG+V C + + PF+L ++ NYY L+ LDRE + Y + +TA+D GSPP
Sbjct: 373 QDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPP 432
Query: 425 LSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYEL 484
LS + ++VAD NDN P FP ++ ENN GAS+ V A DPD +N LV+Y L
Sbjct: 433 LSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSL 492
Query: 485 LDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLF 544
D +G SS +++ S++G + A SFD+EQ R +V RD G PP S+ V+++LF
Sbjct: 493 TDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLF 552
Query: 545 VVDRNDNYPVILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRA 603
V+D+NDN P IL+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAWLSY + +A
Sbjct: 553 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKA 612
Query: 604 SDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQL 663
S+ LF + + GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++S+P++
Sbjct: 613 SEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEV 672
Query: 664 LPDFEDVWE-PGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKL---HQSPGCCAQSCC 719
L D + + S +LYLV+A+A +S +FL ++ + +L H+S
Sbjct: 673 LADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKS--------- 723
Query: 720 RSTEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
L S+ TS + V V+ QTY + SL S + L+
Sbjct: 724 ----RLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLI 770
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 595 bits (1534), Expect = e-170
Identities = 328/771 (42%), Positives = 473/771 (61%), Gaps = 24/771 (3%)
Query: 8 VLCLWVSC--GAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELY 65
+LC+++ G A Q+ YSVPEETE+G VGN+S DL L ++ R R +S +
Sbjct: 16 LLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKTQL 75
Query: 66 FGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFP 125
F V+ SG+L+ DRE+LC ++C L +L++ED L+++ + + ++D NDN+P F
Sbjct: 76 FAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPSFQ 135
Query: 126 AGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPEL 185
+V++ + E PGARF LPNA+D D G N + SY LSP+ +F L + R DG++ PEL
Sbjct: 136 EDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPEL 195
Query: 186 VLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPET 245
VLE +LDRE+ A HLL+LTA DGG P R G + ++V+D ND+ P+F +SVYR VPE
Sbjct: 196 VLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPEN 255
Query: 246 APNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG-PPET 304
+GT + V A DPDEG NGEV YS N +++ F + ++GEVQV SL
Sbjct: 256 ISSGTRVLMVNATDPDEGINGEVMYSFRN-MESKASEIFQLDSQTGEVQVRGSLDFEKYR 314
Query: 305 LLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSV 364
E I+ +D G GL +T +L+ V DVND+APE+ + N + E++ PGTVIAL +V
Sbjct: 315 FYEMEIQGQDGG--GLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNV 372
Query: 365 KDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPP 424
+D+D NG+V C + + PF+L ++ NYY L+ LDRE + Y + +TA+D GSPP
Sbjct: 373 QDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPP 432
Query: 425 LSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYEL 484
LS + ++VAD NDN P FP ++ ENN GAS+ V A DPD +N LV+Y L
Sbjct: 433 LSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSL 492
Query: 485 LDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLF 544
D +G SS +++ S++G + A SFD+EQ R +V RD G PP S+ V+++LF
Sbjct: 493 TDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLF 552
Query: 545 VVDRNDNYPVILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRA 603
V+D+NDN P IL+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAWLSY + +A
Sbjct: 553 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKA 612
Query: 604 SDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQL 663
S+ LF + + GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++S+P++
Sbjct: 613 SEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEV 672
Query: 664 LPDFEDVWE-PGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKL---HQSPGCCAQSCC 719
L D + + S +LYLV+A+A +S +FL ++ + +L H+S
Sbjct: 673 LADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKS--------- 723
Query: 720 RSTEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
L S+ TS + V V+ QTY + SL S + L+
Sbjct: 724 ----RLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLI 770
>gi|9256600 protocadherin alpha subfamily C, 2 isoform 1 precursor
[Homo sapiens]
Length = 1007
Score = 587 bits (1512), Expect = e-167
Identities = 320/779 (41%), Positives = 476/779 (61%), Gaps = 17/779 (2%)
Query: 8 VLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRF--LSSHRELY 65
+L L + G AA QL YSVPEE G VGN++ L L + R L + Y
Sbjct: 30 LLLLLLLPGPAASQLRYSVPEEQAPGALVGNVARALGLELRRLGPGCLRINHLGAPSPRY 89
Query: 66 FGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFP 125
+DL SG L V E DRE LC + C+L+ +++ +P+ + + + +LD NDNSP FP
Sbjct: 90 LELDLTSGALFVNERIDREALCEQRPRCLLSLEVLAHNPVAVSAVEVEILDINDNSPRFP 149
Query: 126 AGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPEL 185
+ QL + E + PGARF + +AQD D G+N + +Y LSPS+HF LD+ + S+ EL
Sbjct: 150 RPNYQLQVSESVAPGARFHIESAQDPDVGANSVQTYELSPSEHFELDLKPLQENSKVLEL 209
Query: 186 VLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPET 245
VL K LDREQ A H LVLTA DGG+PARSG AQ+++ V+DTNDN+P F++S YR ++ E
Sbjct: 210 VLRKGLDREQAALHHLVLTAVDGGIPARSGTAQISVRVLDTNDNSPAFDQSTYRVQLRED 269
Query: 246 APNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPPE-T 304
+P GT++ ++ A DPDEGSNGE++YSLS+ T R F + +GEV+V L E +
Sbjct: 270 SPPGTLVVKLNASDPDEGSNGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLDYEEAS 329
Query: 305 LLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSV 364
+ Y++A D G +A K+LV++ DVND+APE+ L +PVPE+A P T++A+ SV
Sbjct: 330 SYQIYVQATDRGPVPMAGHCKVLVDIVDVNDNAPEVVLTDLYSPVPENATPNTIVAVLSV 389
Query: 365 KDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPP 424
D+D N +V G+ + PF+L F N Y+L++ GPLDRE+++ Y + +TA+D G P
Sbjct: 390 NDQDSGPNRKVSLGLEATLPFRLNG-FGNSYTLVVSGPLDRERVAVYNITVTATDGGIPQ 448
Query: 425 LSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYEL 484
L++ RT+ V ++D+NDN P+F + +++ ENN PG L V A DPD +N V+Y L
Sbjct: 449 LTSLRTLKVEISDINDNPPSFLEDSYSIYIQENNLPGVLLCTVQATDPDEKENAEVTYSL 508
Query: 485 LDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLF 544
L+ +G +S +++ S+SG++ A SFD+E+ R F VE +D G PP S+TVT N++
Sbjct: 509 LEREIQGLPVTSYVSINSASGSLYAVNSFDYEKFREFFVTVEAQDKGSPPLSSTVTANVY 568
Query: 545 VVDRNDNYPVILFPLPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRAS 604
VVD ND+ P IL+P N S E+VPR+A G+LVTKV+A D+DSG NAWL YH+++ S
Sbjct: 569 VVDMNDHAPHILYPTSTNSSAAFEMVPRTAPAGYLVTKVIAMDSDSGQNAWLFYHLAQTS 628
Query: 605 DSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLL 664
D LF++ + GE+RT R + + VVVRD+G+P LS+SV + V + + V ++L
Sbjct: 629 DLDLFKVELHTGEIRTTRKMGDESGSTFNLTVVVRDNGEPSLSASVAITVAVVDRVSKIL 688
Query: 665 PDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQ----SPGCCAQSCC- 719
PD + + S LYL+IAL+ +SF+FL ++ K ++ CC C
Sbjct: 689 PDTQRHVKSPRTYSEITLYLIIALSTVSFIFLLTIIILSIIKCYRYTAYGTACCGGFCGV 748
Query: 720 --RSTEDL------RYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
RS +L +++ + I+V L++TY Y+A L GS +++ +
Sbjct: 749 RERSPAELYKQANNNIDARIPHGLKVQPHFIEVRGNGSLTKTYCYKACLTAGSGSDTFM 807
>gi|14165431 protocadherin alpha subfamily C, 2 isoform 2 precursor
[Homo sapiens]
Length = 884
Score = 587 bits (1512), Expect = e-167
Identities = 320/779 (41%), Positives = 476/779 (61%), Gaps = 17/779 (2%)
Query: 8 VLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRF--LSSHRELY 65
+L L + G AA QL YSVPEE G VGN++ L L + R L + Y
Sbjct: 30 LLLLLLLPGPAASQLRYSVPEEQAPGALVGNVARALGLELRRLGPGCLRINHLGAPSPRY 89
Query: 66 FGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFP 125
+DL SG L V E DRE LC + C+L+ +++ +P+ + + + +LD NDNSP FP
Sbjct: 90 LELDLTSGALFVNERIDREALCEQRPRCLLSLEVLAHNPVAVSAVEVEILDINDNSPRFP 149
Query: 126 AGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPEL 185
+ QL + E + PGARF + +AQD D G+N + +Y LSPS+HF LD+ + S+ EL
Sbjct: 150 RPNYQLQVSESVAPGARFHIESAQDPDVGANSVQTYELSPSEHFELDLKPLQENSKVLEL 209
Query: 186 VLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPET 245
VL K LDREQ A H LVLTA DGG+PARSG AQ+++ V+DTNDN+P F++S YR ++ E
Sbjct: 210 VLRKGLDREQAALHHLVLTAVDGGIPARSGTAQISVRVLDTNDNSPAFDQSTYRVQLRED 269
Query: 246 APNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPPE-T 304
+P GT++ ++ A DPDEGSNGE++YSLS+ T R F + +GEV+V L E +
Sbjct: 270 SPPGTLVVKLNASDPDEGSNGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLDYEEAS 329
Query: 305 LLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSV 364
+ Y++A D G +A K+LV++ DVND+APE+ L +PVPE+A P T++A+ SV
Sbjct: 330 SYQIYVQATDRGPVPMAGHCKVLVDIVDVNDNAPEVVLTDLYSPVPENATPNTIVAVLSV 389
Query: 365 KDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPP 424
D+D N +V G+ + PF+L F N Y+L++ GPLDRE+++ Y + +TA+D G P
Sbjct: 390 NDQDSGPNRKVSLGLEATLPFRLNG-FGNSYTLVVSGPLDRERVAVYNITVTATDGGIPQ 448
Query: 425 LSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYEL 484
L++ RT+ V ++D+NDN P+F + +++ ENN PG L V A DPD +N V+Y L
Sbjct: 449 LTSLRTLKVEISDINDNPPSFLEDSYSIYIQENNLPGVLLCTVQATDPDEKENAEVTYSL 508
Query: 485 LDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLF 544
L+ +G +S +++ S+SG++ A SFD+E+ R F VE +D G PP S+TVT N++
Sbjct: 509 LEREIQGLPVTSYVSINSASGSLYAVNSFDYEKFREFFVTVEAQDKGSPPLSSTVTANVY 568
Query: 545 VVDRNDNYPVILFPLPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRAS 604
VVD ND+ P IL+P N S E+VPR+A G+LVTKV+A D+DSG NAWL YH+++ S
Sbjct: 569 VVDMNDHAPHILYPTSTNSSAAFEMVPRTAPAGYLVTKVIAMDSDSGQNAWLFYHLAQTS 628
Query: 605 DSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLL 664
D LF++ + GE+RT R + + VVVRD+G+P LS+SV + V + + V ++L
Sbjct: 629 DLDLFKVELHTGEIRTTRKMGDESGSTFNLTVVVRDNGEPSLSASVAITVAVVDRVSKIL 688
Query: 665 PDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQ----SPGCCAQSCC- 719
PD + + S LYL+IAL+ +SF+FL ++ K ++ CC C
Sbjct: 689 PDTQRHVKSPRTYSEITLYLIIALSTVSFIFLLTIIILSIIKCYRYTAYGTACCGGFCGV 748
Query: 720 --RSTEDL------RYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
RS +L +++ + I+V L++TY Y+A L GS +++ +
Sbjct: 749 RERSPAELYKQANNNIDARIPHGLKVQPHFIEVRGNGSLTKTYCYKACLTAGSGSDTFM 807
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 583 bits (1503), Expect = e-166
Identities = 330/786 (41%), Positives = 472/786 (60%), Gaps = 26/786 (3%)
Query: 1 MVGCGVAVLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSS 60
+V G+ + LW + Q+ YSVPEE E+G VG++S DL L ++ R R +
Sbjct: 13 LVLLGILLGTLWET---GCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPR 69
Query: 61 HRELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDN 120
R F ++ SG+LV DRE+LC C L D+++ED ++++ + + V D NDN
Sbjct: 70 GRTQLFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDN 129
Query: 121 SPLFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGS 180
+P F ++++ I E RF LP+A D D G N + SY LSP+ HF L + + DGS
Sbjct: 130 APYFRESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGS 189
Query: 181 EYPELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRT 240
+YPELVL++ALDRE++A H LVLTA DGG P R+G A++ ++V+D NDNAP F + YR
Sbjct: 190 KYPELVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRA 249
Query: 241 KVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG 300
VPE GT L V A DPDEG N EV+YS + F + SG + L
Sbjct: 250 SVPENLALGTQLLVVNATDPDEGVNAEVRYSF-RYVDDKAAQVFKLDCNSGTISTIGELD 308
Query: 301 PPET-LLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVI 359
E+ + ++A D G ++ AK+L+ V DVND+APE+ +L++ VPE++ GT+I
Sbjct: 309 HEESGFYQMEVQAMDNA--GYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLI 366
Query: 360 ALFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASD 419
AL +V D+D + NG+VIC + PF+L S+ NYYSL+ D LDREQ+ Y + +TA+D
Sbjct: 367 ALLNVNDQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATD 426
Query: 420 SGSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGL 479
G+PPLST I+++VAD NDN P FPQ ++ ENN G SL V A DPD +N
Sbjct: 427 RGTPPLSTETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQ 486
Query: 480 VSYELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATV 539
++Y L + +G S SS +++ S +G + A +SFD+EQ R +V RD G PP S+ V
Sbjct: 487 ITYSLAENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNV 546
Query: 540 TINLFVVDRNDNYPVILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSY 598
+++LFV+D+NDN P IL+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAWLSY
Sbjct: 547 SLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSY 606
Query: 599 HISRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSN 658
+ +AS+ LF + + GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++
Sbjct: 607 RLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVAD 666
Query: 659 SVPQLLPDFEDVWEP-GGQLSAQNLYLVIALACISFLFLGCLLFFVCTKL---HQSPGCC 714
S+PQ+L D + P + S LYLV+A+A +S +FL ++ + +L H+S
Sbjct: 667 SIPQVLADLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQ 726
Query: 715 AQSCCRSTEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLLLRGE 774
A G + P S + V V+ QTY + SL S S L+ +
Sbjct: 727 AS-----------GGGLTGAP--ASHFVGVDGVQAFLQTYSHEVSLTTDS-RKSHLIFPQ 772
Query: 775 YNAADL 780
N AD+
Sbjct: 773 PNYADM 778
>gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 583 bits (1503), Expect = e-166
Identities = 330/786 (41%), Positives = 472/786 (60%), Gaps = 26/786 (3%)
Query: 1 MVGCGVAVLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSS 60
+V G+ + LW + Q+ YSVPEE E+G VG++S DL L ++ R R +
Sbjct: 13 LVLLGILLGTLWET---GCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPR 69
Query: 61 HRELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDN 120
R F ++ SG+LV DRE+LC C L D+++ED ++++ + + V D NDN
Sbjct: 70 GRTQLFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDN 129
Query: 121 SPLFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGS 180
+P F ++++ I E RF LP+A D D G N + SY LSP+ HF L + + DGS
Sbjct: 130 APYFRESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGS 189
Query: 181 EYPELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRT 240
+YPELVL++ALDRE++A H LVLTA DGG P R+G A++ ++V+D NDNAP F + YR
Sbjct: 190 KYPELVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRA 249
Query: 241 KVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG 300
VPE GT L V A DPDEG N EV+YS + F + SG + L
Sbjct: 250 SVPENLALGTQLLVVNATDPDEGVNAEVRYSF-RYVDDKAAQVFKLDCNSGTISTIGELD 308
Query: 301 PPET-LLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVI 359
E+ + ++A D G ++ AK+L+ V DVND+APE+ +L++ VPE++ GT+I
Sbjct: 309 HEESGFYQMEVQAMDNA--GYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLI 366
Query: 360 ALFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASD 419
AL +V D+D + NG+VIC + PF+L S+ NYYSL+ D LDREQ+ Y + +TA+D
Sbjct: 367 ALLNVNDQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATD 426
Query: 420 SGSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGL 479
G+PPLST I+++VAD NDN P FPQ ++ ENN G SL V A DPD +N
Sbjct: 427 RGTPPLSTETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQ 486
Query: 480 VSYELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATV 539
++Y L + +G S SS +++ S +G + A +SFD+EQ R +V RD G PP S+ V
Sbjct: 487 ITYSLAENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNV 546
Query: 540 TINLFVVDRNDNYPVILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSY 598
+++LFV+D+NDN P IL+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAWLSY
Sbjct: 547 SLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSY 606
Query: 599 HISRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSN 658
+ +AS+ LF + + GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++
Sbjct: 607 RLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVAD 666
Query: 659 SVPQLLPDFEDVWEP-GGQLSAQNLYLVIALACISFLFLGCLLFFVCTKL---HQSPGCC 714
S+PQ+L D + P + S LYLV+A+A +S +FL ++ + +L H+S
Sbjct: 667 SIPQVLADLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQ 726
Query: 715 AQSCCRSTEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLLLRGE 774
A G + P S + V V+ QTY + SL S S L+ +
Sbjct: 727 AS-----------GGGLTGAP--ASHFVGVDGVQAFLQTYSHEVSLTTDS-RKSHLIFPQ 772
Query: 775 YNAADL 780
N AD+
Sbjct: 773 PNYADM 778
>gi|14277682 protocadherin gamma subfamily C, 4 isoform 2 precursor
[Homo sapiens]
Length = 871
Score = 579 bits (1492), Expect = e-165
Identities = 318/720 (44%), Positives = 437/720 (60%), Gaps = 16/720 (2%)
Query: 8 VLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFG 67
+L L+ G GQ+ Y VPEE++ G VGN++ D L ++S+R + + +F
Sbjct: 17 LLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFR 76
Query: 68 VDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAG 127
VDL SG L+++ P DRE LC A+C++ + V E PLE+++ + ++D ND++P FP
Sbjct: 77 VDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQ 136
Query: 128 DVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVL 187
+ L I E PG RF L AQD D GSN I SY LS ++HF LD+ R DGS PEL+L
Sbjct: 137 QLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLL 196
Query: 188 EKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAP 247
EK LDRE+++ + LVLTA DGG P RSG A++ + V+D NDNAP F++S YR V E+AP
Sbjct: 197 EKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAP 256
Query: 248 NGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPPETLLE 307
G VL ++ A DPD G +G V + S T +R+ F +HP +G++ + LGP + E
Sbjct: 257 AGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTL---LGPLDFESE 313
Query: 308 AYIE----ARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFS 363
Y E ARD G + L V++ DVND+AP + + +PE A PGTV+AL S
Sbjct: 314 NYYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALIS 373
Query: 364 VKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSP 423
V+D D SNG V + PF L ++F N +SL+ GPLDRE S Y +++TASD+G+P
Sbjct: 374 VQDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNP 433
Query: 424 PLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYE 483
PLST RTI ++++DVNDN P+F Q E+FV ENN PG L + A DPD G N L+SY
Sbjct: 434 PLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYS 493
Query: 484 LLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINL 543
LL+ + SASS +++ +GA+ A SFD+EQ + F+V+ RD G PP S+TVT+ L
Sbjct: 494 LLEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRL 553
Query: 544 FVVDRNDNYPVILFPLPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRA 603
FV+D NDN P +L P R GS+ + +P S GHL+TKV A D DSG NAW+SY + A
Sbjct: 554 FVLDLNDNAPAVLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEA 613
Query: 604 SDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQL 663
D SLF +S GE+RTA + +P D Q++V+VV+D G PPLS+SVTL V L +
Sbjct: 614 PDPSLFAVSRYAGEVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPV 672
Query: 664 LPDFEDVWEPGGQLSAQNLYLVIALACISFLFLG--------CLLFFVCTKLHQSPGCCA 715
+PD + P S LYL ++L I F+ G CL C G CA
Sbjct: 673 VPDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCA 732
>gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precursor
[Homo sapiens]
Length = 938
Score = 579 bits (1492), Expect = e-165
Identities = 318/720 (44%), Positives = 437/720 (60%), Gaps = 16/720 (2%)
Query: 8 VLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFG 67
+L L+ G GQ+ Y VPEE++ G VGN++ D L ++S+R + + +F
Sbjct: 17 LLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFR 76
Query: 68 VDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAG 127
VDL SG L+++ P DRE LC A+C++ + V E PLE+++ + ++D ND++P FP
Sbjct: 77 VDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQ 136
Query: 128 DVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVL 187
+ L I E PG RF L AQD D GSN I SY LS ++HF LD+ R DGS PEL+L
Sbjct: 137 QLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLL 196
Query: 188 EKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAP 247
EK LDRE+++ + LVLTA DGG P RSG A++ + V+D NDNAP F++S YR V E+AP
Sbjct: 197 EKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAP 256
Query: 248 NGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPPETLLE 307
G VL ++ A DPD G +G V + S T +R+ F +HP +G++ + LGP + E
Sbjct: 257 AGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTL---LGPLDFESE 313
Query: 308 AYIE----ARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFS 363
Y E ARD G + L V++ DVND+AP + + +PE A PGTV+AL S
Sbjct: 314 NYYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALIS 373
Query: 364 VKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSP 423
V+D D SNG V + PF L ++F N +SL+ GPLDRE S Y +++TASD+G+P
Sbjct: 374 VQDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNP 433
Query: 424 PLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYE 483
PLST RTI ++++DVNDN P+F Q E+FV ENN PG L + A DPD G N L+SY
Sbjct: 434 PLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYS 493
Query: 484 LLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINL 543
LL+ + SASS +++ +GA+ A SFD+EQ + F+V+ RD G PP S+TVT+ L
Sbjct: 494 LLEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRL 553
Query: 544 FVVDRNDNYPVILFPLPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRA 603
FV+D NDN P +L P R GS+ + +P S GHL+TKV A D DSG NAW+SY + A
Sbjct: 554 FVLDLNDNAPAVLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEA 613
Query: 604 SDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQL 663
D SLF +S GE+RTA + +P D Q++V+VV+D G PPLS+SVTL V L +
Sbjct: 614 PDPSLFAVSRYAGEVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPV 672
Query: 664 LPDFEDVWEPGGQLSAQNLYLVIALACISFLFLG--------CLLFFVCTKLHQSPGCCA 715
+PD + P S LYL ++L I F+ G CL C G CA
Sbjct: 673 VPDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCA 732
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 575 bits (1483), Expect = e-164
Identities = 330/777 (42%), Positives = 460/777 (59%), Gaps = 26/777 (3%)
Query: 3 GCGVAVLC--LWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSS 60
G G+A+LC L C +GQ+ YSV EE ++G VGN++ DL L ++ R R +S
Sbjct: 10 GRGLALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSR 69
Query: 61 HRELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDN 120
R F ++ SG+LV E DRE+LC C++ ++++ED L++ ++ I + D NDN
Sbjct: 70 GRTQLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDN 129
Query: 121 SPLFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGS 180
+P FP ++++ I E PG RF + A D D G N + +Y LSP+ +F L + S +G+
Sbjct: 130 APNFPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGA 189
Query: 181 EYPELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRT 240
+YPELVLE+ALDRE++ H LVL A DGG P SG+ + +IV+D NDN P+F + YR
Sbjct: 190 KYPELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRV 249
Query: 241 KVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG 300
V E P GT L V A DPDEG N +V Y L + ++ FH++ SGEV + SL
Sbjct: 250 SVWENVPVGTRLLTVNATDPDEGFNAQVSYIL-DKMPGKIAEIFHLNSVSGEVSILKSLD 308
Query: 301 PPETLL-EAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVI 359
+ + E IEA+D GL S AK+LV V DVND+APE+ +L++ VPE+ G I
Sbjct: 309 YEDAMFYEIKIEAQDGP--GLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREI 366
Query: 360 ALFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASD 419
AL V D D NG+V + PF+L S D YY L+ LDREQISEY + + ASD
Sbjct: 367 ALIDVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASD 426
Query: 420 SGSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGL 479
GSPPLST IT+ V D+NDN P FP ++ ENN GAS+ V AQDPD N
Sbjct: 427 GGSPPLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNAR 486
Query: 480 VSYELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATV 539
++Y L + +G SS +++ S++G + A SFD+EQ R V D G PP S+ V
Sbjct: 487 ITYALTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNV 546
Query: 540 TINLFVVDRNDNYPVILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSY 598
++NLFV+D+NDN P IL+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAWLSY
Sbjct: 547 SLNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSY 606
Query: 599 HISRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSN 658
+ +AS+ LF + + GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++
Sbjct: 607 RLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVAD 666
Query: 659 SVPQLLPDFEDVWEPGGQL--SAQNLYLVIALACISFLFLGCLLFFVCTKL---HQSPGC 713
+P +L D + EP + S LYLV+A+A +S +FL ++ + +L H+S
Sbjct: 667 RIPDILADLGSL-EPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLL 725
Query: 714 CAQSCCRSTEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
A G + S P S + V QTY + SL S + L+
Sbjct: 726 QAS-----------GGGLASTP--GSHFVGADGVRAFLQTYSHEVSLTADSRKSHLI 769
>gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precursor
[Homo sapiens]
Length = 829
Score = 575 bits (1483), Expect = e-164
Identities = 330/777 (42%), Positives = 460/777 (59%), Gaps = 26/777 (3%)
Query: 3 GCGVAVLC--LWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSS 60
G G+A+LC L C +GQ+ YSV EE ++G VGN++ DL L ++ R R +S
Sbjct: 10 GRGLALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSR 69
Query: 61 HRELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDN 120
R F ++ SG+LV E DRE+LC C++ ++++ED L++ ++ I + D NDN
Sbjct: 70 GRTQLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDN 129
Query: 121 SPLFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGS 180
+P FP ++++ I E PG RF + A D D G N + +Y LSP+ +F L + S +G+
Sbjct: 130 APNFPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGA 189
Query: 181 EYPELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRT 240
+YPELVLE+ALDRE++ H LVL A DGG P SG+ + +IV+D NDN P+F + YR
Sbjct: 190 KYPELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRV 249
Query: 241 KVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG 300
V E P GT L V A DPDEG N +V Y L + ++ FH++ SGEV + SL
Sbjct: 250 SVWENVPVGTRLLTVNATDPDEGFNAQVSYIL-DKMPGKIAEIFHLNSVSGEVSILKSLD 308
Query: 301 PPETLL-EAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVI 359
+ + E IEA+D GL S AK+LV V DVND+APE+ +L++ VPE+ G I
Sbjct: 309 YEDAMFYEIKIEAQDGP--GLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREI 366
Query: 360 ALFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASD 419
AL V D D NG+V + PF+L S D YY L+ LDREQISEY + + ASD
Sbjct: 367 ALIDVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASD 426
Query: 420 SGSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGL 479
GSPPLST IT+ V D+NDN P FP ++ ENN GAS+ V AQDPD N
Sbjct: 427 GGSPPLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNAR 486
Query: 480 VSYELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATV 539
++Y L + +G SS +++ S++G + A SFD+EQ R V D G PP S+ V
Sbjct: 487 ITYALTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNV 546
Query: 540 TINLFVVDRNDNYPVILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSY 598
++NLFV+D+NDN P IL+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAWLSY
Sbjct: 547 SLNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSY 606
Query: 599 HISRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSN 658
+ +AS+ LF + + GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++
Sbjct: 607 RLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVAD 666
Query: 659 SVPQLLPDFEDVWEPGGQL--SAQNLYLVIALACISFLFLGCLLFFVCTKL---HQSPGC 713
+P +L D + EP + S LYLV+A+A +S +FL ++ + +L H+S
Sbjct: 667 RIPDILADLGSL-EPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLL 725
Query: 714 CAQSCCRSTEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
A G + S P S + V QTY + SL S + L+
Sbjct: 726 QAS-----------GGGLASTP--GSHFVGADGVRAFLQTYSHEVSLTADSRKSHLI 769
>gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 574 bits (1480), Expect = e-163
Identities = 326/769 (42%), Positives = 460/769 (59%), Gaps = 24/769 (3%)
Query: 9 LCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGV 68
L L V A Q+ YSV EE E G VGN++ DL L ++ R R +S R F +
Sbjct: 18 LLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFAL 77
Query: 69 DLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGD 128
+ SG LV DRE+LC CV +++LED +++ ++ + ++D NDN P F
Sbjct: 78 NPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQ 137
Query: 129 VQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLE 188
++ + E PGARF LP A D D G N + Y L+ + +F LD+ S DG +YPELVLE
Sbjct: 138 REIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLE 197
Query: 189 KALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPN 248
+ALDRE+ A H LVLTA DGG P RSG A++ II+VDTNDNAPVF + Y V E P
Sbjct: 198 RALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPV 257
Query: 249 GTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPPET-LLE 307
GT L V+A DPDEG+NG+V YS + ++ F ++ SG++ + L ++ +
Sbjct: 258 GTRLLTVKATDPDEGANGDVTYSF-RKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYD 316
Query: 308 AYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSVKDE 367
+EA D GL + +K+LV V D ND+APE+ +L++ V E ++PGTVIALF+V D
Sbjct: 317 IDVEAHDGP--GLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDS 374
Query: 368 DLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPPLST 427
D NG V C + PF L ++ NYY LL LDRE++SEY + +TA+D G+PPLST
Sbjct: 375 DSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLST 434
Query: 428 RRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDV 487
I++ V D+NDN P FP ++ ENN GAS+ + AQDPD G N ++Y L +
Sbjct: 435 ETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAED 494
Query: 488 ISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVD 547
+G SS +++ S++G + A SFD+EQ R + D G PP S+ V+++LFV+D
Sbjct: 495 TFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLD 554
Query: 548 RNDNYPVILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDS 606
+NDN P IL+P P +GS VE+ PRSA +G+LVTKVVA D DSG NAWLSY + ++S+
Sbjct: 555 QNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEP 614
Query: 607 SLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPD 666
LF + + GE+RTAR +L DA+KQR+VVVV+DHG PPLS++VTL V +++S+P +L D
Sbjct: 615 GLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLAD 674
Query: 667 FEDVWEPGGQL--SAQNLYLVIALACISFLFLGCLLFFVCTKL---HQSPGCCAQSCCRS 721
+ +P S LYLV+A+A +S +FL + + KL H+S A+
Sbjct: 675 LGSL-KPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAE----- 728
Query: 722 TEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
GS++ P S + V V QTY + SL S + L+
Sbjct: 729 ------GSRLAGVP--ASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLI 769
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 574 bits (1480), Expect = e-163
Identities = 326/769 (42%), Positives = 460/769 (59%), Gaps = 24/769 (3%)
Query: 9 LCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGV 68
L L V A Q+ YSV EE E G VGN++ DL L ++ R R +S R F +
Sbjct: 18 LLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFAL 77
Query: 69 DLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGD 128
+ SG LV DRE+LC CV +++LED +++ ++ + ++D NDN P F
Sbjct: 78 NPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQ 137
Query: 129 VQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLE 188
++ + E PGARF LP A D D G N + Y L+ + +F LD+ S DG +YPELVLE
Sbjct: 138 REIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLE 197
Query: 189 KALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPN 248
+ALDRE+ A H LVLTA DGG P RSG A++ II+VDTNDNAPVF + Y V E P
Sbjct: 198 RALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPV 257
Query: 249 GTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPPET-LLE 307
GT L V+A DPDEG+NG+V YS + ++ F ++ SG++ + L ++ +
Sbjct: 258 GTRLLTVKATDPDEGANGDVTYSF-RKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYD 316
Query: 308 AYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSVKDE 367
+EA D GL + +K+LV V D ND+APE+ +L++ V E ++PGTVIALF+V D
Sbjct: 317 IDVEAHDGP--GLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDS 374
Query: 368 DLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPPLST 427
D NG V C + PF L ++ NYY LL LDRE++SEY + +TA+D G+PPLST
Sbjct: 375 DSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLST 434
Query: 428 RRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDV 487
I++ V D+NDN P FP ++ ENN GAS+ + AQDPD G N ++Y L +
Sbjct: 435 ETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAED 494
Query: 488 ISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVD 547
+G SS +++ S++G + A SFD+EQ R + D G PP S+ V+++LFV+D
Sbjct: 495 TFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLD 554
Query: 548 RNDNYPVILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDS 606
+NDN P IL+P P +GS VE+ PRSA +G+LVTKVVA D DSG NAWLSY + ++S+
Sbjct: 555 QNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEP 614
Query: 607 SLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPD 666
LF + + GE+RTAR +L DA+KQR+VVVV+DHG PPLS++VTL V +++S+P +L D
Sbjct: 615 GLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLAD 674
Query: 667 FEDVWEPGGQL--SAQNLYLVIALACISFLFLGCLLFFVCTKL---HQSPGCCAQSCCRS 721
+ +P S LYLV+A+A +S +FL + + KL H+S A+
Sbjct: 675 LGSL-KPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAE----- 728
Query: 722 TEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
GS++ P S + V V QTY + SL S + L+
Sbjct: 729 ------GSRLAGVP--ASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLI 769
>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 572 bits (1473), Expect = e-163
Identities = 331/771 (42%), Positives = 460/771 (59%), Gaps = 31/771 (4%)
Query: 20 GQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGVDLPSGNLVVRE 79
GQ+ YSVPEET++G VGN+S DL L ++ R +S R F ++ SG+L+
Sbjct: 29 GQIRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRGRTQLFALNPRSGSLITAG 88
Query: 80 PADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGDVQLHIPEFLTP 139
DRE+LC C++ + ++ED +L + I ++D NDN+P F D+++ I E P
Sbjct: 89 RIDREELCAQSPRCLININTLVEDKGKLFGVEIEIIDINDNNPKFQVEDLEVKINEIAVP 148
Query: 140 GARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLEKALDREQRATH 199
GAR+ LP A D D G N + SY LSP+ HF LD+ + +G+ PELVLE+ALDRE+ A H
Sbjct: 149 GARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPELVLERALDREEEAAH 208
Query: 200 LLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPNGTVLFRVQALD 259
LVLTA DGG P RS ++ + V+DTNDNAPVF +YR KV E P GT L V A D
Sbjct: 209 HLVLTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLENMPPGTRLLTVTASD 268
Query: 260 PDEGSNGEVQYSLS--NSTQAELRHRFHVHPKSGEVQVAASLGPPE-TLLEAYIEARDEG 316
PDEG NG+V Y N Q L F ++ +GE+ +A SL E + E I+A D G
Sbjct: 269 PDEGINGKVAYKFRKINEKQTPL---FQLNENTGEISIAKSLDYEECSFYEMEIQAEDVG 325
Query: 317 VFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSVKDEDLDSNGRVI 376
L KLL+ V DVND+ PE+ +L +PV E++ PGTVIA SV D+D NG+V+
Sbjct: 326 --ALLGRTKLLISVEDVNDNRPEVIITSLFSPVLENSLPGTVIAFLSVHDQDSGKNGQVV 383
Query: 377 CGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPPLSTRRTITVSVA 436
C PF+L S NYY L+ LDRE +S Y + + ASD G+PPLST I + VA
Sbjct: 384 CYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNITVMASDLGTPPLSTETQIALHVA 443
Query: 437 DVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVISEGPSASS 496
D+NDN P FP ++ ENN GAS+ + A DPD +N V+Y + + +G SS
Sbjct: 444 DINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPDSQENAQVTYSVTEDTLQGAPLSS 503
Query: 497 LLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRNDNYPVIL 556
+++ S +G + A SFD+EQ+R V D G PP S+ ++++LFV+D+NDN P IL
Sbjct: 504 YISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDPPLSSNMSLSLFVLDQNDNAPEIL 563
Query: 557 FP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRISANI 615
+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAWLSY + +AS+ LF + +
Sbjct: 564 YPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHT 623
Query: 616 GELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDV---WE 672
GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++S+P++L + + +
Sbjct: 624 GEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLTELGSLKPSVD 683
Query: 673 PGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKL---HQSPGCCAQSCCRSTEDLRYGS 729
P S+ LYLV+A+A IS +FL + + +L H+S R +D G
Sbjct: 684 PND--SSLTLYLVVAVAAISCVFLAFVAVLLGLRLRRWHKS---------RLLQD--SGG 730
Query: 730 KMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLLLRGEYNAADL 780
++V P S + V V+ QTY SL S S L+ + N AD+
Sbjct: 731 RLVGVP--ASHFVGVEEVQAFLQTYSQEVSLTADS-RKSHLIFPQPNYADM 778
>gi|7662056 protocadherin gamma subfamily A, 8 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 572 bits (1473), Expect = e-163
Identities = 331/771 (42%), Positives = 460/771 (59%), Gaps = 31/771 (4%)
Query: 20 GQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGVDLPSGNLVVRE 79
GQ+ YSVPEET++G VGN+S DL L ++ R +S R F ++ SG+L+
Sbjct: 29 GQIRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRGRTQLFALNPRSGSLITAG 88
Query: 80 PADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGDVQLHIPEFLTP 139
DRE+LC C++ + ++ED +L + I ++D NDN+P F D+++ I E P
Sbjct: 89 RIDREELCAQSPRCLININTLVEDKGKLFGVEIEIIDINDNNPKFQVEDLEVKINEIAVP 148
Query: 140 GARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLEKALDREQRATH 199
GAR+ LP A D D G N + SY LSP+ HF LD+ + +G+ PELVLE+ALDRE+ A H
Sbjct: 149 GARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPELVLERALDREEEAAH 208
Query: 200 LLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPNGTVLFRVQALD 259
LVLTA DGG P RS ++ + V+DTNDNAPVF +YR KV E P GT L V A D
Sbjct: 209 HLVLTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLENMPPGTRLLTVTASD 268
Query: 260 PDEGSNGEVQYSLS--NSTQAELRHRFHVHPKSGEVQVAASLGPPE-TLLEAYIEARDEG 316
PDEG NG+V Y N Q L F ++ +GE+ +A SL E + E I+A D G
Sbjct: 269 PDEGINGKVAYKFRKINEKQTPL---FQLNENTGEISIAKSLDYEECSFYEMEIQAEDVG 325
Query: 317 VFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSVKDEDLDSNGRVI 376
L KLL+ V DVND+ PE+ +L +PV E++ PGTVIA SV D+D NG+V+
Sbjct: 326 --ALLGRTKLLISVEDVNDNRPEVIITSLFSPVLENSLPGTVIAFLSVHDQDSGKNGQVV 383
Query: 377 CGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPPLSTRRTITVSVA 436
C PF+L S NYY L+ LDRE +S Y + + ASD G+PPLST I + VA
Sbjct: 384 CYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNITVMASDLGTPPLSTETQIALHVA 443
Query: 437 DVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVISEGPSASS 496
D+NDN P FP ++ ENN GAS+ + A DPD +N V+Y + + +G SS
Sbjct: 444 DINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPDSQENAQVTYSVTEDTLQGAPLSS 503
Query: 497 LLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRNDNYPVIL 556
+++ S +G + A SFD+EQ+R V D G PP S+ ++++LFV+D+NDN P IL
Sbjct: 504 YISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDPPLSSNMSLSLFVLDQNDNAPEIL 563
Query: 557 FP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRISANI 615
+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAWLSY + +AS+ LF + +
Sbjct: 564 YPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHT 623
Query: 616 GELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDV---WE 672
GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++S+P++L + + +
Sbjct: 624 GEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLTELGSLKPSVD 683
Query: 673 PGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKL---HQSPGCCAQSCCRSTEDLRYGS 729
P S+ LYLV+A+A IS +FL + + +L H+S R +D G
Sbjct: 684 PND--SSLTLYLVVAVAAISCVFLAFVAVLLGLRLRRWHKS---------RLLQD--SGG 730
Query: 730 KMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLLLRGEYNAADL 780
++V P S + V V+ QTY SL S S L+ + N AD+
Sbjct: 731 RLVGVP--ASHFVGVEEVQAFLQTYSQEVSLTADS-RKSHLIFPQPNYADM 778
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 571 bits (1472), Expect = e-163
Identities = 328/759 (43%), Positives = 449/759 (59%), Gaps = 20/759 (2%)
Query: 17 AAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGVDLPSGNLV 76
A A Q+ YSVPEETE+G VGN+S DL L ++ R R +S R F ++ SG LV
Sbjct: 26 ARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGRTQLFSLNPRSGTLV 85
Query: 77 VREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGDVQLHIPEF 136
DRE+LC C++ + +++ED ++L+ I I V D ND++P F A +++ I E
Sbjct: 86 TAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAPKFQAESLEVKINEI 145
Query: 137 LTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLEKALDREQR 196
PGAR+ LP A D D G N + SY LSP+ HF L++ + +G+ PELVLE+ALDRE+
Sbjct: 146 AVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINPELVLERALDREEA 205
Query: 197 ATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPNGTVLFRVQ 256
H LVLTA DGG P RS ++ + V+DTNDNAPVF + +YR KV E P GT L
Sbjct: 206 TAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKVLENVPPGTWLLTAT 265
Query: 257 ALDPDEGSNGEVQYSL--SNSTQAELRHRFHVHPKSGEVQVAASLGPPE-TLLEAYIEAR 313
A D DEG NG+V Y N Q+ L F ++ +GE+ A SL E + E I+A
Sbjct: 266 ASDLDEGINGKVAYKFWKINEKQSLL---FQLNENTGEISTAKSLDYEECSFYEMEIQAE 322
Query: 314 DEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSVKDEDLDSNG 373
D G GL K+L+ V DVND+ PE+ +L +PV EDA GTVI LF+ D D NG
Sbjct: 323 DGG--GLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNAHDRDSGKNG 380
Query: 374 RVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPPLSTRRTITV 433
+V+C + F L S ++YY LL LDRE+ SEY + +TA+D G+PPLST IT+
Sbjct: 381 QVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPPLSTEIHITL 440
Query: 434 SVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVISEGPS 493
V D+NDN P F Q +++ ENN G S+ V A DPD +N V Y L + +G
Sbjct: 441 QVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLAEDTIQGSP 500
Query: 494 ASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRNDNYP 553
S+ +++ S +G + A SFD+EQ R QV D G PP S+ V++ LFV+D+NDN P
Sbjct: 501 LSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFVLDQNDNAP 560
Query: 554 VILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRIS 612
IL+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAWLSY + +AS+ LF +
Sbjct: 561 EILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKASEPGLFSVG 620
Query: 613 ANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDVWE 672
+ GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++S+P +L D +
Sbjct: 621 LHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDILADLGSLQI 680
Query: 673 PGG-QLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCRSTEDLRYGSKM 731
P + S LYLV+A+A +S +FL ++ + +L + R+T D G
Sbjct: 681 PADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRH---WHSSHLLRATSDGLAG--- 734
Query: 732 VSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
TS + V V QTY SL S + L+
Sbjct: 735 ----VPTSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLI 769
>gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor
[Homo sapiens]
Length = 828
Score = 571 bits (1472), Expect = e-163
Identities = 328/759 (43%), Positives = 449/759 (59%), Gaps = 20/759 (2%)
Query: 17 AAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGVDLPSGNLV 76
A A Q+ YSVPEETE+G VGN+S DL L ++ R R +S R F ++ SG LV
Sbjct: 26 ARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGRTQLFSLNPRSGTLV 85
Query: 77 VREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGDVQLHIPEF 136
DRE+LC C++ + +++ED ++L+ I I V D ND++P F A +++ I E
Sbjct: 86 TAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAPKFQAESLEVKINEI 145
Query: 137 LTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLEKALDREQR 196
PGAR+ LP A D D G N + SY LSP+ HF L++ + +G+ PELVLE+ALDRE+
Sbjct: 146 AVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINPELVLERALDREEA 205
Query: 197 ATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPNGTVLFRVQ 256
H LVLTA DGG P RS ++ + V+DTNDNAPVF + +YR KV E P GT L
Sbjct: 206 TAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKVLENVPPGTWLLTAT 265
Query: 257 ALDPDEGSNGEVQYSL--SNSTQAELRHRFHVHPKSGEVQVAASLGPPE-TLLEAYIEAR 313
A D DEG NG+V Y N Q+ L F ++ +GE+ A SL E + E I+A
Sbjct: 266 ASDLDEGINGKVAYKFWKINEKQSLL---FQLNENTGEISTAKSLDYEECSFYEMEIQAE 322
Query: 314 DEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSVKDEDLDSNG 373
D G GL K+L+ V DVND+ PE+ +L +PV EDA GTVI LF+ D D NG
Sbjct: 323 DGG--GLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNAHDRDSGKNG 380
Query: 374 RVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPPLSTRRTITV 433
+V+C + F L S ++YY LL LDRE+ SEY + +TA+D G+PPLST IT+
Sbjct: 381 QVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPPLSTEIHITL 440
Query: 434 SVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVISEGPS 493
V D+NDN P F Q +++ ENN G S+ V A DPD +N V Y L + +G
Sbjct: 441 QVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLAEDTIQGSP 500
Query: 494 ASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRNDNYP 553
S+ +++ S +G + A SFD+EQ R QV D G PP S+ V++ LFV+D+NDN P
Sbjct: 501 LSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFVLDQNDNAP 560
Query: 554 VILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRIS 612
IL+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAWLSY + +AS+ LF +
Sbjct: 561 EILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKASEPGLFSVG 620
Query: 613 ANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDVWE 672
+ GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++S+P +L D +
Sbjct: 621 LHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDILADLGSLQI 680
Query: 673 PGG-QLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCRSTEDLRYGSKM 731
P + S LYLV+A+A +S +FL ++ + +L + R+T D G
Sbjct: 681 PADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRH---WHSSHLLRATSDGLAG--- 734
Query: 732 VSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
TS + V V QTY SL S + L+
Sbjct: 735 ----VPTSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLI 769
>gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precursor
[Homo sapiens]
Length = 813
Score = 570 bits (1469), Expect = e-162
Identities = 324/779 (41%), Positives = 456/779 (58%), Gaps = 29/779 (3%)
Query: 3 GCGVAVL---CLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLS 59
GCG +L L C +GQ+ YS+PEE ++G VGN++ DL L ++ R R +S
Sbjct: 9 GCGELLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVS 68
Query: 60 SHRELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTND 119
R F ++ SG+LV DRE+LC CV+ +++++E+ ++++ + + ++D ND
Sbjct: 69 RGRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDIND 128
Query: 120 NSPLFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDG 179
N P F ++++ + E G R LP A+D D G N + SY LS + HF LD+ S DG
Sbjct: 129 NFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDG 188
Query: 180 SEYPELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYR 239
+YPELVLE+ LDRE+ H L+LTA DGG P SG + + V+D NDNAP+F S Y
Sbjct: 189 QKYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYS 248
Query: 240 TKVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASL 299
VPE P GT L + A DPDEG NG++ YS N + ++ F + GE+ SL
Sbjct: 249 VSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEE-KISETFQLDSNLGEISTLQSL 307
Query: 300 GPPET---LLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPG 356
E+ L+E + A+D G L ++AK++V V DVND+APE+ +L++ + ED PG
Sbjct: 308 DYEESRFYLME--VVAQDGGA--LVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPG 363
Query: 357 TVIALFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLIT 416
TVIALFSV D D NG + C + PF+L S DNYY LL LDRE+ S+Y + +T
Sbjct: 364 TVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLT 423
Query: 417 ASDSGSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGK 476
D G+PPLST I + VADVNDN PNFPQ V ENN G S+ V A DPD G
Sbjct: 424 VMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGD 483
Query: 477 NGLVSYELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRS 536
N V+Y L + +G SS +++ S +G + A SFD+EQLR V D G PP S
Sbjct: 484 NARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLS 543
Query: 537 ATVTINLFVVDRNDNYPVILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAW 595
+ V+++LFV+D+NDN P IL+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAW
Sbjct: 544 SNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAW 603
Query: 596 LSYHISRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVL 655
LSY + +AS+ LF + + GE+RTAR +L DA+KQ +VV V DHG PPLS++ T+ V
Sbjct: 604 LSYRLLKASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVA 663
Query: 656 LSNSVPQLLPDFEDVWEPGGQLSAQ-NLYLVIALACISFLFLGCLLFFVCTKL---HQSP 711
+++ +P +L D + P LYLV+A+A +S +FL ++ + +L H+S
Sbjct: 664 VADRIPDILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSR 723
Query: 712 GCCAQSCCRSTEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
A+ GS++ P S + V V QTY + SL S + L+
Sbjct: 724 LLQAE-----------GSRLAGVP--ASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLI 769
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 570 bits (1469), Expect = e-162
Identities = 324/779 (41%), Positives = 456/779 (58%), Gaps = 29/779 (3%)
Query: 3 GCGVAVL---CLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLS 59
GCG +L L C +GQ+ YS+PEE ++G VGN++ DL L ++ R R +S
Sbjct: 9 GCGELLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVS 68
Query: 60 SHRELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTND 119
R F ++ SG+LV DRE+LC CV+ +++++E+ ++++ + + ++D ND
Sbjct: 69 RGRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDIND 128
Query: 120 NSPLFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDG 179
N P F ++++ + E G R LP A+D D G N + SY LS + HF LD+ S DG
Sbjct: 129 NFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDG 188
Query: 180 SEYPELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYR 239
+YPELVLE+ LDRE+ H L+LTA DGG P SG + + V+D NDNAP+F S Y
Sbjct: 189 QKYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYS 248
Query: 240 TKVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASL 299
VPE P GT L + A DPDEG NG++ YS N + ++ F + GE+ SL
Sbjct: 249 VSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEE-KISETFQLDSNLGEISTLQSL 307
Query: 300 GPPET---LLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPG 356
E+ L+E + A+D G L ++AK++V V DVND+APE+ +L++ + ED PG
Sbjct: 308 DYEESRFYLME--VVAQDGGA--LVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPG 363
Query: 357 TVIALFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLIT 416
TVIALFSV D D NG + C + PF+L S DNYY LL LDRE+ S+Y + +T
Sbjct: 364 TVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLT 423
Query: 417 ASDSGSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGK 476
D G+PPLST I + VADVNDN PNFPQ V ENN G S+ V A DPD G
Sbjct: 424 VMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGD 483
Query: 477 NGLVSYELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRS 536
N V+Y L + +G SS +++ S +G + A SFD+EQLR V D G PP S
Sbjct: 484 NARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLS 543
Query: 537 ATVTINLFVVDRNDNYPVILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAW 595
+ V+++LFV+D+NDN P IL+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAW
Sbjct: 544 SNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAW 603
Query: 596 LSYHISRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVL 655
LSY + +AS+ LF + + GE+RTAR +L DA+KQ +VV V DHG PPLS++ T+ V
Sbjct: 604 LSYRLLKASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVA 663
Query: 656 LSNSVPQLLPDFEDVWEPGGQLSAQ-NLYLVIALACISFLFLGCLLFFVCTKL---HQSP 711
+++ +P +L D + P LYLV+A+A +S +FL ++ + +L H+S
Sbjct: 664 VADRIPDILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSR 723
Query: 712 GCCAQSCCRSTEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
A+ GS++ P S + V V QTY + SL S + L+
Sbjct: 724 LLQAE-----------GSRLAGVP--ASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLI 769
>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
[Homo sapiens]
Length = 808
Score = 567 bits (1462), Expect = e-161
Identities = 309/704 (43%), Positives = 435/704 (61%), Gaps = 11/704 (1%)
Query: 22 LEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGVDLPSGNLVVREPA 81
+ YS+PEE +G VGNL+ DL L +S+R R S +L+F VD SG+L+V++
Sbjct: 33 IRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRV--SAEKLHFSVDAQSGDLLVKDRI 90
Query: 82 DREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGDVQLHIPEFLTPGA 141
DREQ+C+ + C L + V+E+PL + + + + D ND++P F ++ L I E ++ G
Sbjct: 91 DREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFRKDEINLEISESVSLGM 150
Query: 142 RFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLEKALDREQRATHLL 201
L +A+D D N + Y LSP+++F L DG +YPELVL+K LDRE ++ H L
Sbjct: 151 GTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPELVLQKTLDRETQSAHHL 210
Query: 202 VLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPNGTVLFRVQALDPD 261
VLTA DGG P RSG AQ+ I+V+D NDN PVF + VYR + E P GT + RV+A D D
Sbjct: 211 VLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLREDVPPGTSILRVKATDQD 270
Query: 262 EGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPPETLLEAY---IEARDEGVF 318
EG N E+ YS + +H F + +G + L E +E Y IEA+D G
Sbjct: 271 EGINSEITYSFFGVAD-KAQHVFSLDYTTGNILTQQPLDFEE--VERYTINIEAKDRG-- 325
Query: 319 GLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSVKDEDLDSNGRVICG 378
L++ K++VEV D ND++PE+ +LS+ + ED+ PG V+ALF +D+D NG V C
Sbjct: 326 SLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQDSGENGEVRCS 385
Query: 379 MSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPPLSTRRTITVSVADV 438
+S PF++ +S +NYY L+ D LDREQ EY V I A+D G PPLS+ +TIT+ + DV
Sbjct: 386 LSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDV 445
Query: 439 NDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVISEGPSASSLL 498
NDN P F Q + V ENN PGAS+ +V A DPD G NG VSY L+ E + SS +
Sbjct: 446 NDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIASDLESRTLSSYV 505
Query: 499 AVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRNDNYPVILFP 558
+V + SG + A+ +FD EQLR F ++ RD G P SA V++ + V DRNDN P +L+P
Sbjct: 506 SVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYP 565
Query: 559 -LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRISANIGE 617
L +GS + VPR+A+ G+LVTKVVA DADSG NAWLSYH+ +AS+ LF + GE
Sbjct: 566 ALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGLFSLGLRTGE 625
Query: 618 LRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDVWEPGGQL 677
+R R + D+V+QR++V VRD G PPLS++ TL ++ ++S+ ++LPDF D P
Sbjct: 626 VRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDFSDHPTPSDSQ 685
Query: 678 SAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCRS 721
+ YLV+ALA IS LFL ++ + +L QS A C S
Sbjct: 686 AEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFES 729
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 567 bits (1462), Expect = e-161
Identities = 309/704 (43%), Positives = 435/704 (61%), Gaps = 11/704 (1%)
Query: 22 LEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGVDLPSGNLVVREPA 81
+ YS+PEE +G VGNL+ DL L +S+R R S +L+F VD SG+L+V++
Sbjct: 33 IRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRV--SAEKLHFSVDAQSGDLLVKDRI 90
Query: 82 DREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGDVQLHIPEFLTPGA 141
DREQ+C+ + C L + V+E+PL + + + + D ND++P F ++ L I E ++ G
Sbjct: 91 DREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFRKDEINLEISESVSLGM 150
Query: 142 RFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLEKALDREQRATHLL 201
L +A+D D N + Y LSP+++F L DG +YPELVL+K LDRE ++ H L
Sbjct: 151 GTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPELVLQKTLDRETQSAHHL 210
Query: 202 VLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPNGTVLFRVQALDPD 261
VLTA DGG P RSG AQ+ I+V+D NDN PVF + VYR + E P GT + RV+A D D
Sbjct: 211 VLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLREDVPPGTSILRVKATDQD 270
Query: 262 EGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPPETLLEAY---IEARDEGVF 318
EG N E+ YS + +H F + +G + L E +E Y IEA+D G
Sbjct: 271 EGINSEITYSFFGVAD-KAQHVFSLDYTTGNILTQQPLDFEE--VERYTINIEAKDRG-- 325
Query: 319 GLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSVKDEDLDSNGRVICG 378
L++ K++VEV D ND++PE+ +LS+ + ED+ PG V+ALF +D+D NG V C
Sbjct: 326 SLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQDSGENGEVRCS 385
Query: 379 MSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPPLSTRRTITVSVADV 438
+S PF++ +S +NYY L+ D LDREQ EY V I A+D G PPLS+ +TIT+ + DV
Sbjct: 386 LSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDV 445
Query: 439 NDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVISEGPSASSLL 498
NDN P F Q + V ENN PGAS+ +V A DPD G NG VSY L+ E + SS +
Sbjct: 446 NDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIASDLESRTLSSYV 505
Query: 499 AVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRNDNYPVILFP 558
+V + SG + A+ +FD EQLR F ++ RD G P SA V++ + V DRNDN P +L+P
Sbjct: 506 SVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYP 565
Query: 559 -LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRISANIGE 617
L +GS + VPR+A+ G+LVTKVVA DADSG NAWLSYH+ +AS+ LF + GE
Sbjct: 566 ALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGLFSLGLRTGE 625
Query: 618 LRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDVWEPGGQL 677
+R R + D+V+QR++V VRD G PPLS++ TL ++ ++S+ ++LPDF D P
Sbjct: 626 VRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDFSDHPTPSDSQ 685
Query: 678 SAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCRS 721
+ YLV+ALA IS LFL ++ + +L QS A C S
Sbjct: 686 AEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFES 729
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 563 bits (1451), Expect = e-160
Identities = 317/757 (41%), Positives = 452/757 (59%), Gaps = 16/757 (2%)
Query: 17 AAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGVDLPSGNLV 76
A AG++ YSV EET++G VG+++ DL L ++ R R +S R F ++ SG+LV
Sbjct: 26 AWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQLFALNQRSGSLV 85
Query: 77 VREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGDVQLHIPEF 136
DRE++C A C++ +++++ED + L+ I + ++D NDN P F ++ + I E
Sbjct: 86 TAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRFLTEEINVKIMEN 145
Query: 137 LTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLEKALDREQR 196
PG RF L A D D G+N + SY LSP++HF L + S D ++YPELVLE+ LDRE+
Sbjct: 146 TAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPELVLERVLDREEE 205
Query: 197 ATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPNGTVLFRVQ 256
H LVLTA DGG P RS A + + VVD ND+ PVF Y+ VPE P GT L V
Sbjct: 206 RVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTRLLTVH 265
Query: 257 ALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPPET-LLEAYIEARDE 315
A+D DEG NGEV YS T +L FH++ +GE+ L ET E ++A+D
Sbjct: 266 AIDLDEGVNGEVTYSFRKIT-PKLPKMFHLNSLTGEISTLEGLDYEETAFYEMEVQAQDG 324
Query: 316 GVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSVKDEDLDSNGRV 375
G + AK+L+ V DVND+APE+ +LS+ +PED GTVIALF ++D D NG V
Sbjct: 325 P--GSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDRDSGKNGEV 382
Query: 376 ICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPPLSTRRTITVSV 435
C + PF+L S DNYY L+ LDRE +S Y + + A+D G+PPLS I + V
Sbjct: 383 TCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSRETHIFMQV 442
Query: 436 ADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVISEGPSAS 495
AD NDN P FP +++AENN GAS+ V AQD D N ++Y L + +G S
Sbjct: 443 ADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAEDTIQGAPVS 502
Query: 496 SLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRNDNYPVI 555
S +++ S +G + A SFD+EQLR +V D G PP S+ ++++LFV+D+NDN P I
Sbjct: 503 SYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLDQNDNPPEI 562
Query: 556 LFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRISAN 614
L+P LP +GS +E+ PRSA G+LVTKVVA D DSG NAWLSY + +AS+ LF +
Sbjct: 563 LYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASEPGLFAVGLY 622
Query: 615 IGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDVWEPG 674
GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++S+P++L D +
Sbjct: 623 TGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLADLGSLEPSD 682
Query: 675 GQLSAQ-NLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCRSTEDLRYGSKMVS 733
G + LYLV+A+A +S +FL +L + +L + + L+ ++
Sbjct: 683 GPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRR---------WHKSRLLQASEGGLA 733
Query: 734 NPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
N TS + + V+ QTY + SL S + L+
Sbjct: 734 N-VPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLI 769
>gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precursor
[Homo sapiens]
Length = 817
Score = 563 bits (1451), Expect = e-160
Identities = 317/757 (41%), Positives = 452/757 (59%), Gaps = 16/757 (2%)
Query: 17 AAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGVDLPSGNLV 76
A AG++ YSV EET++G VG+++ DL L ++ R R +S R F ++ SG+LV
Sbjct: 26 AWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQLFALNQRSGSLV 85
Query: 77 VREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGDVQLHIPEF 136
DRE++C A C++ +++++ED + L+ I + ++D NDN P F ++ + I E
Sbjct: 86 TAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRFLTEEINVKIMEN 145
Query: 137 LTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLEKALDREQR 196
PG RF L A D D G+N + SY LSP++HF L + S D ++YPELVLE+ LDRE+
Sbjct: 146 TAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPELVLERVLDREEE 205
Query: 197 ATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPNGTVLFRVQ 256
H LVLTA DGG P RS A + + VVD ND+ PVF Y+ VPE P GT L V
Sbjct: 206 RVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTRLLTVH 265
Query: 257 ALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPPET-LLEAYIEARDE 315
A+D DEG NGEV YS T +L FH++ +GE+ L ET E ++A+D
Sbjct: 266 AIDLDEGVNGEVTYSFRKIT-PKLPKMFHLNSLTGEISTLEGLDYEETAFYEMEVQAQDG 324
Query: 316 GVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSVKDEDLDSNGRV 375
G + AK+L+ V DVND+APE+ +LS+ +PED GTVIALF ++D D NG V
Sbjct: 325 P--GSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDRDSGKNGEV 382
Query: 376 ICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPPLSTRRTITVSV 435
C + PF+L S DNYY L+ LDRE +S Y + + A+D G+PPLS I + V
Sbjct: 383 TCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSRETHIFMQV 442
Query: 436 ADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVISEGPSAS 495
AD NDN P FP +++AENN GAS+ V AQD D N ++Y L + +G S
Sbjct: 443 ADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAEDTIQGAPVS 502
Query: 496 SLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRNDNYPVI 555
S +++ S +G + A SFD+EQLR +V D G PP S+ ++++LFV+D+NDN P I
Sbjct: 503 SYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLDQNDNPPEI 562
Query: 556 LFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRISAN 614
L+P LP +GS +E+ PRSA G+LVTKVVA D DSG NAWLSY + +AS+ LF +
Sbjct: 563 LYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASEPGLFAVGLY 622
Query: 615 IGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDVWEPG 674
GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++S+P++L D +
Sbjct: 623 TGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLADLGSLEPSD 682
Query: 675 GQLSAQ-NLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCRSTEDLRYGSKMVS 733
G + LYLV+A+A +S +FL +L + +L + + L+ ++
Sbjct: 683 GPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRR---------WHKSRLLQASEGGLA 733
Query: 734 NPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
N TS + + V+ QTY + SL S + L+
Sbjct: 734 N-VPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLI 769
>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
[Homo sapiens]
Length = 810
Score = 563 bits (1450), Expect = e-160
Identities = 304/706 (43%), Positives = 431/706 (61%), Gaps = 9/706 (1%)
Query: 15 CGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGVDLPSGN 74
CGA + Q+ Y++PEE G VG L+ DL L + +R R + E YF V L SG+
Sbjct: 24 CGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSA---EDYFNVSLESGD 80
Query: 75 LVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGDVQLHIP 134
L+V DRE++C K C L ++ V E+P+ + + + + D NDN+P F A + L I
Sbjct: 81 LLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAKGIDLEIC 140
Query: 135 EFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLEKALDRE 194
E PG +F+L +AQD D N + Y+++P+Q+F L DGS+YP L+LEK LDRE
Sbjct: 141 ESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEKPLDRE 200
Query: 195 QRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPNGTVLFR 254
+++H L+LTA DGG P SG + I V D NDNAPVF + VYR + E P GT + R
Sbjct: 201 HQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPWGTSVLR 260
Query: 255 VQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPPETLLEAY-IEAR 313
V A D DEG N E+ Y+ NS + F+++P +G++ +L ET +EA+
Sbjct: 261 VMATDQDEGINAEITYAFLNSPIST--SLFNLNPNTGDITTNGTLDFEETSRYVLSVEAK 318
Query: 314 DEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSVKDEDLDSNG 373
D GV + + +E+ D ND+APE+ F++ SN +PED+ GTVIAL V+D+D NG
Sbjct: 319 DGGVH--TAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDSGQNG 376
Query: 374 RVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPPLSTRRTITV 433
V C PF+L ++ NYY L+I G L+REQ ++Y V I A+D G P LS+R +IT+
Sbjct: 377 MVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITL 436
Query: 434 SVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVISEGPS 493
++D+NDN P F Q + V+ENN PGAS+ +V A DPDLG NG VSY +L E
Sbjct: 437 HISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDLEPRE 496
Query: 494 ASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRNDNYP 553
S ++V SG + A+ +FD EQLR F ++ RD G P SA V++ + V D NDN P
Sbjct: 497 LLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAP 556
Query: 554 VILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRIS 612
+L+P L +GS ++VPR+A G+LVTKVVA DADSG NAWLSYH+ +AS+ LF +
Sbjct: 557 RVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLG 616
Query: 613 ANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDVWE 672
GE+RTAR + DA +QR++V VRD G PPLS++ TL ++ ++S+ ++LPD D E
Sbjct: 617 LRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRPE 676
Query: 673 PGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSC 718
P + YLV+ALA IS LFL ++ + +L +S + C
Sbjct: 677 PSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGC 722
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 563 bits (1450), Expect = e-160
Identities = 304/706 (43%), Positives = 431/706 (61%), Gaps = 9/706 (1%)
Query: 15 CGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGVDLPSGN 74
CGA + Q+ Y++PEE G VG L+ DL L + +R R + E YF V L SG+
Sbjct: 24 CGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSA---EDYFNVSLESGD 80
Query: 75 LVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGDVQLHIP 134
L+V DRE++C K C L ++ V E+P+ + + + + D NDN+P F A + L I
Sbjct: 81 LLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAKGIDLEIC 140
Query: 135 EFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLEKALDRE 194
E PG +F+L +AQD D N + Y+++P+Q+F L DGS+YP L+LEK LDRE
Sbjct: 141 ESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEKPLDRE 200
Query: 195 QRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPNGTVLFR 254
+++H L+LTA DGG P SG + I V D NDNAPVF + VYR + E P GT + R
Sbjct: 201 HQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPWGTSVLR 260
Query: 255 VQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPPETLLEAY-IEAR 313
V A D DEG N E+ Y+ NS + F+++P +G++ +L ET +EA+
Sbjct: 261 VMATDQDEGINAEITYAFLNSPIST--SLFNLNPNTGDITTNGTLDFEETSRYVLSVEAK 318
Query: 314 DEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSVKDEDLDSNG 373
D GV + + +E+ D ND+APE+ F++ SN +PED+ GTVIAL V+D+D NG
Sbjct: 319 DGGVH--TAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDSGQNG 376
Query: 374 RVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPPLSTRRTITV 433
V C PF+L ++ NYY L+I G L+REQ ++Y V I A+D G P LS+R +IT+
Sbjct: 377 MVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITL 436
Query: 434 SVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVISEGPS 493
++D+NDN P F Q + V+ENN PGAS+ +V A DPDLG NG VSY +L E
Sbjct: 437 HISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDLEPRE 496
Query: 494 ASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRNDNYP 553
S ++V SG + A+ +FD EQLR F ++ RD G P SA V++ + V D NDN P
Sbjct: 497 LLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAP 556
Query: 554 VILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRIS 612
+L+P L +GS ++VPR+A G+LVTKVVA DADSG NAWLSYH+ +AS+ LF +
Sbjct: 557 RVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLG 616
Query: 613 ANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDVWE 672
GE+RTAR + DA +QR++V VRD G PPLS++ TL ++ ++S+ ++LPD D E
Sbjct: 617 LRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRPE 676
Query: 673 PGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSC 718
P + YLV+ALA IS LFL ++ + +L +S + C
Sbjct: 677 PSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGC 722
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 562 bits (1448), Expect = e-160
Identities = 320/764 (41%), Positives = 453/764 (59%), Gaps = 21/764 (2%)
Query: 11 LWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGVDL 70
LW GAAA Q+ YS+PEE E+G VGN+ DL L ++ R +S R F ++
Sbjct: 23 LW---GAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRMQLFSLNP 79
Query: 71 PSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGDVQ 130
+G+LV DRE+LC C++++++++ED L L+ + + ++D NDN+P F +++
Sbjct: 80 RNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPRFLKEELE 139
Query: 131 LHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLEKA 190
+ I E P +RF L D D G N + + LS + HF +D+ S G +YPELVLE
Sbjct: 140 VKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYPELVLEGT 199
Query: 191 LDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPNGT 250
LDRE A + LVLTA DGG P RS AQ+ + V+D NDN P+F + VYR VPE P GT
Sbjct: 200 LDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVPENLPVGT 259
Query: 251 VLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG-PPETLLEAY 309
+ V A D DEG +GEV YS T+ ++ F ++ +GE+ +A+L + E
Sbjct: 260 PVLAVTATDQDEGVHGEVTYSFVKITE-KISQIFCLNVLTGEISTSANLDYEDSSFYELG 318
Query: 310 IEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSVKDEDL 369
+EARD GL AK+L+ + DVND+ PE+ + S + E A PGTVIALF V D D
Sbjct: 319 VEARDGP--GLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVFDRDS 376
Query: 370 DSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPPLSTRR 429
NG V C + + PF+L S NYY L+ + LDRE++ Y + +TA+D G+PPLST
Sbjct: 377 GLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPLSTET 436
Query: 430 TITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVIS 489
I+++VAD NDN P FP ++V ENN GAS+ V A DPD+ +N VSY L +
Sbjct: 437 IISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLAEDTL 496
Query: 490 EGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRN 549
+G SS +++ S +G + A SFD+EQLR V D G PP S+ V+++LFV+D+N
Sbjct: 497 QGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFVLDQN 556
Query: 550 DNYPVILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSL 608
DN P IL+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAWLSY + +AS+ L
Sbjct: 557 DNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGL 616
Query: 609 FRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFE 668
F + + GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++ +P +L D
Sbjct: 617 FSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLG 676
Query: 669 DVWEPGGQL--SAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCRSTEDLR 726
+ EP + S LYLV+A+A +S +FL ++ + +L Q +S
Sbjct: 677 SL-EPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRL--------QRWHKSRLLQA 727
Query: 727 YGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
G + S P S + V V QTY + SL S + L+
Sbjct: 728 SGGGLASMP--GSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLI 769
>gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 562 bits (1448), Expect = e-160
Identities = 320/764 (41%), Positives = 453/764 (59%), Gaps = 21/764 (2%)
Query: 11 LWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGVDL 70
LW GAAA Q+ YS+PEE E+G VGN+ DL L ++ R +S R F ++
Sbjct: 23 LW---GAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRMQLFSLNP 79
Query: 71 PSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGDVQ 130
+G+LV DRE+LC C++++++++ED L L+ + + ++D NDN+P F +++
Sbjct: 80 RNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPRFLKEELE 139
Query: 131 LHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLEKA 190
+ I E P +RF L D D G N + + LS + HF +D+ S G +YPELVLE
Sbjct: 140 VKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYPELVLEGT 199
Query: 191 LDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPNGT 250
LDRE A + LVLTA DGG P RS AQ+ + V+D NDN P+F + VYR VPE P GT
Sbjct: 200 LDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVPENLPVGT 259
Query: 251 VLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG-PPETLLEAY 309
+ V A D DEG +GEV YS T+ ++ F ++ +GE+ +A+L + E
Sbjct: 260 PVLAVTATDQDEGVHGEVTYSFVKITE-KISQIFCLNVLTGEISTSANLDYEDSSFYELG 318
Query: 310 IEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFSVKDEDL 369
+EARD GL AK+L+ + DVND+ PE+ + S + E A PGTVIALF V D D
Sbjct: 319 VEARDGP--GLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVFDRDS 376
Query: 370 DSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSPPLSTRR 429
NG V C + + PF+L S NYY L+ + LDRE++ Y + +TA+D G+PPLST
Sbjct: 377 GLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPLSTET 436
Query: 430 TITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVIS 489
I+++VAD NDN P FP ++V ENN GAS+ V A DPD+ +N VSY L +
Sbjct: 437 IISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLAEDTL 496
Query: 490 EGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRN 549
+G SS +++ S +G + A SFD+EQLR V D G PP S+ V+++LFV+D+N
Sbjct: 497 QGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFVLDQN 556
Query: 550 DNYPVILFP-LPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSL 608
DN P IL+P LP +GS VE+ PRSA G+LVTKVVA D DSG NAWLSY + +AS+ L
Sbjct: 557 DNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGL 616
Query: 609 FRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFE 668
F + + GE+RTAR +L DA+KQ +VV V+DHG PPLS++VTL V +++ +P +L D
Sbjct: 617 FSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLG 676
Query: 669 DVWEPGGQL--SAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCRSTEDLR 726
+ EP + S LYLV+A+A +S +FL ++ + +L Q +S
Sbjct: 677 SL-EPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRL--------QRWHKSRLLQA 727
Query: 727 YGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL 770
G + S P S + V V QTY + SL S + L+
Sbjct: 728 SGGGLASMP--GSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLI 769
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,142,844
Number of Sequences: 37866
Number of extensions: 1510585
Number of successful extensions: 10003
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3519
Number of HSP's gapped (non-prelim): 573
length of query: 818
length of database: 18,247,518
effective HSP length: 111
effective length of query: 707
effective length of database: 14,044,392
effective search space: 9929385144
effective search space used: 9929385144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.