Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 94400927
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94400927 YjeF N-terminal domain containing 3 [Homo sapiens]
(299 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94400927 YjeF N-terminal domain containing 3 [Homo sapiens] 604 e-173
gi|91984773 apolipoprotein A-I binding protein precursor [Homo s... 229 2e-60
gi|215598561 enhancer of mRNA decapping 3 [Homo sapiens] 37 0.021
gi|215598545 enhancer of mRNA decapping 3 [Homo sapiens] 37 0.021
gi|19923613 enhancer of mRNA decapping 3 [Homo sapiens] 37 0.021
gi|223634006 hypothetical protein LOC441869 [Homo sapiens] 32 0.68
gi|70608155 phosphodiesterase 3A [Homo sapiens] 30 2.0
gi|190194355 p90 autoantigen [Homo sapiens] 29 4.4
gi|134254443 pecanex-like 2 [Homo sapiens] 29 5.8
gi|33469933 phospholipase C beta 4 isoform a [Homo sapiens] 28 9.8
gi|33469939 phospholipase C beta 4 isoform b [Homo sapiens] 28 9.8
gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens] 28 9.8
gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens] 28 9.8
>gi|94400927 YjeF N-terminal domain containing 3 [Homo sapiens]
Length = 299
Score = 604 bits (1558), Expect = e-173
Identities = 299/299 (100%), Positives = 299/299 (100%)
Query: 1 MSSAAGPDPSEAPEERHFLRALELQPPLADMGRAELSSNATTSLVQRRKQAWGRQSWLEQ 60
MSSAAGPDPSEAPEERHFLRALELQPPLADMGRAELSSNATTSLVQRRKQAWGRQSWLEQ
Sbjct: 1 MSSAAGPDPSEAPEERHFLRALELQPPLADMGRAELSSNATTSLVQRRKQAWGRQSWLEQ 60
Query: 61 IWNAGPVCQSTAEAAALERELLEDYRFGRQQLVELCGHASAVAVTKAFPLPALSRKQRTV 120
IWNAGPVCQSTAEAAALERELLEDYRFGRQQLVELCGHASAVAVTKAFPLPALSRKQRTV
Sbjct: 61 IWNAGPVCQSTAEAAALERELLEDYRFGRQQLVELCGHASAVAVTKAFPLPALSRKQRTV 120
Query: 121 LVVCGPEQNGAVGLVCARHLRVFEYEPTIFYPTRSLDLLHRDLTTQCEKMDIPFLSYLPT 180
LVVCGPEQNGAVGLVCARHLRVFEYEPTIFYPTRSLDLLHRDLTTQCEKMDIPFLSYLPT
Sbjct: 121 LVVCGPEQNGAVGLVCARHLRVFEYEPTIFYPTRSLDLLHRDLTTQCEKMDIPFLSYLPT 180
Query: 181 EVQLINEAYGLVVDAVLGPGVEPGEVGGPCTRALATLKLLSIPLVSLDIPSGWDAETGSD 240
EVQLINEAYGLVVDAVLGPGVEPGEVGGPCTRALATLKLLSIPLVSLDIPSGWDAETGSD
Sbjct: 181 EVQLINEAYGLVVDAVLGPGVEPGEVGGPCTRALATLKLLSIPLVSLDIPSGWDAETGSD 240
Query: 241 SEDGLRPDVLVSLAAPKRCAGRFSGRHHFVAGRFVPDDVRRKFALRLPGYTGTDCVAAL 299
SEDGLRPDVLVSLAAPKRCAGRFSGRHHFVAGRFVPDDVRRKFALRLPGYTGTDCVAAL
Sbjct: 241 SEDGLRPDVLVSLAAPKRCAGRFSGRHHFVAGRFVPDDVRRKFALRLPGYTGTDCVAAL 299
>gi|91984773 apolipoprotein A-I binding protein precursor [Homo
sapiens]
Length = 288
Score = 229 bits (584), Expect = 2e-60
Identities = 115/230 (50%), Positives = 156/230 (67%), Gaps = 3/230 (1%)
Query: 70 STAEAAALERELLEDYRFGRQQLVELCGHASAVAVTKAFPLPALSRKQRTVLVVCGPEQN 129
S EA A+++EL +Y+F QL+EL G + A A+ KA+P ++SR TVLV+CGP N
Sbjct: 61 SQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVICGPGNN 120
Query: 130 GAVGLVCARHLRVFEYEPTIFYPTRSLDLLHRDLTTQCEKMDIPFLSYLPTEVQLINEAY 189
G GLVCARHL++F YEPTI+YP R L L TQC+KMDIPFL +P E I+E Y
Sbjct: 121 GGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPMTIDELY 180
Query: 190 GLVVDAVLGPGVEPGEVGGPCTRALATLKLLSIPLVSLDIPSGWDAETGSDSEDGLRPDV 249
LVVDA+ G + G+V P L+ LK L++P+ S+DIPSGWD E G + G++PD+
Sbjct: 181 ELVVDAIFGFSFK-GDVREPFHSILSVLKGLTVPIASIDIPSGWDVEKG--NAGGIQPDL 237
Query: 250 LVSLAAPKRCAGRFSGRHHFVAGRFVPDDVRRKFALRLPGYTGTDCVAAL 299
L+SL APK+ A +F+GR+H++ GRFVP + +K+ L LP Y T+CV L
Sbjct: 238 LISLTAPKKSATQFTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRL 287
>gi|215598561 enhancer of mRNA decapping 3 [Homo sapiens]
Length = 508
Score = 37.0 bits (84), Expect = 0.021
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 111 PALSRKQRTVLVVCGPEQNGAVGLVCARHLRVFEYEPTIFYP--TRSLDLLHRDLT--TQ 166
P ++ TV ++CGP GA G+ C RHL + + +F P + L+ + +L+ ++
Sbjct: 328 PKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSK 387
Query: 167 CEKMDIPFLSYLPT 180
+ + L LPT
Sbjct: 388 TQGQQVSSLKDLPT 401
>gi|215598545 enhancer of mRNA decapping 3 [Homo sapiens]
Length = 508
Score = 37.0 bits (84), Expect = 0.021
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 111 PALSRKQRTVLVVCGPEQNGAVGLVCARHLRVFEYEPTIFYP--TRSLDLLHRDLT--TQ 166
P ++ TV ++CGP GA G+ C RHL + + +F P + L+ + +L+ ++
Sbjct: 328 PKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSK 387
Query: 167 CEKMDIPFLSYLPT 180
+ + L LPT
Sbjct: 388 TQGQQVSSLKDLPT 401
>gi|19923613 enhancer of mRNA decapping 3 [Homo sapiens]
Length = 508
Score = 37.0 bits (84), Expect = 0.021
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 111 PALSRKQRTVLVVCGPEQNGAVGLVCARHLRVFEYEPTIFYP--TRSLDLLHRDLT--TQ 166
P ++ TV ++CGP GA G+ C RHL + + +F P + L+ + +L+ ++
Sbjct: 328 PKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSK 387
Query: 167 CEKMDIPFLSYLPT 180
+ + L LPT
Sbjct: 388 TQGQQVSSLKDLPT 401
>gi|223634006 hypothetical protein LOC441869 [Homo sapiens]
Length = 399
Score = 32.0 bits (71), Expect = 0.68
Identities = 39/121 (32%), Positives = 50/121 (41%), Gaps = 21/121 (17%)
Query: 7 PDPSEAPEERHFLRALELQPPLADMGRAELSSNATTSLVQRRKQAWGRQSWLEQIWN--A 64
P+P E EE LR +EL A R E S Q WG L+ +W A
Sbjct: 6 PEPREEEEEEQELRWMELDSEEALGTRTEGPSVV---------QGWGH--LLQAVWRGPA 54
Query: 65 GPVCQSTAEAAALERELLEDYRFGRQ--QLVELCGHASAV--AVTKAFPLPALSRKQRTV 120
G V Q + A++E E GR L L GHA V + + P+ A+ R RT
Sbjct: 55 GLVTQLLRQGASVE----ERDHAGRTPLHLAVLRGHAPLVRLLLQRGAPVGAVDRAGRTA 110
Query: 121 L 121
L
Sbjct: 111 L 111
>gi|70608155 phosphodiesterase 3A [Homo sapiens]
Length = 1141
Score = 30.4 bits (67), Expect = 2.0
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 178 LPTEVQLINEAYGLVVDAVLGPGVEPGEVGGPCTRALATLKLLSIPLVSL--------DI 229
+ ++ ++ EA+GL+ D + P + P CT A LLS L +
Sbjct: 343 ITVDIAVMGEAHGLITDLLADPSLPP----NVCTSLRAVSNLLSTQLTFQAIHKPRVNPV 398
Query: 230 PSGWDAETGSDSEDGLRPDVLVSLAAPKR 258
S + T SDSE+ D LA PKR
Sbjct: 399 TSLSENYTCSDSEESSEKD---KLAIPKR 424
>gi|190194355 p90 autoantigen [Homo sapiens]
Length = 905
Score = 29.3 bits (64), Expect = 4.4
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 71 TAEAAALERELLEDYRFGRQQLVELCGHASAVAV---TKAFPLPALSRKQRTVLVVCGPE 127
T+E + ELLED ++ + G S +AV T+ + VVC
Sbjct: 52 TSECLSCLVELLEDPNISASLILSIIGLLSQLAVDIETRDCLQNTYNLNSVLAGVVCRSS 111
Query: 128 QNGAVGLVCARHLRVFEYEPTIFYPTRSLDLL 159
+V L C + L+ Y IFY ++D L
Sbjct: 112 HTDSVFLQCIQLLQKLTYNVKIFYSGANIDEL 143
>gi|134254443 pecanex-like 2 [Homo sapiens]
Length = 2137
Score = 28.9 bits (63), Expect = 5.8
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 203 PGEVGGPCTRALATLKLLSIPLVSLDIPSGWDAETGSDSEDGLR--PDVLVSLAAPKRCA 260
PG G P + +SIP+++LD+P G +G P+ L + + +C+
Sbjct: 415 PGAAGSP------NAEQISIPVITLDLPEGGGGGVPCPEGNGSERTPERLKTRVSTNQCS 468
Query: 261 GRFSG 265
G SG
Sbjct: 469 GYGSG 473
>gi|33469933 phospholipase C beta 4 isoform a [Homo sapiens]
Length = 1194
Score = 28.1 bits (61), Expect = 9.8
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 15 ERHFLRALELQPPLADMGRAELSSNATTSLVQRRKQAWGRQSWLEQIWNAGPVC------ 68
E H L P D+ R L N +KQ +S +E +A P
Sbjct: 438 ESHPLEPGRALPSPNDLKRKILIKNKRLKPEVEKKQLEALRSMMEAGESASPANILEDDN 497
Query: 69 QSTAEAAALERELLEDYRFGRQQLVELCGHASAVA 103
+ E+A E E +++FG + + GH AVA
Sbjct: 498 EEEIESADQEEEAHPEFKFGNELSADDLGHKEAVA 532
>gi|33469939 phospholipase C beta 4 isoform b [Homo sapiens]
Length = 1175
Score = 28.1 bits (61), Expect = 9.8
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 15 ERHFLRALELQPPLADMGRAELSSNATTSLVQRRKQAWGRQSWLEQIWNAGPVC------ 68
E H L P D+ R L N +KQ +S +E +A P
Sbjct: 438 ESHPLEPGRALPSPNDLKRKILIKNKRLKPEVEKKQLEALRSMMEAGESASPANILEDDN 497
Query: 69 QSTAEAAALERELLEDYRFGRQQLVELCGHASAVA 103
+ E+A E E +++FG + + GH AVA
Sbjct: 498 EEEIESADQEEEAHPEFKFGNELSADDLGHKEAVA 532
>gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens]
Length = 710
Score = 28.1 bits (61), Expect = 9.8
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 198 GPGVEPGEVGGPCTRALATLKLLSIPLVSLDIPSGWDAETGSDSEDGLRPDVLVSLAA 255
GPG PGE GP LV L++P G A + S++ P V+LA+
Sbjct: 50 GPGARPGEASGPSPPPAEDDSDGDSFLVLLEVPHGGAAAEAAGSQEA-EPGSRVNLAS 106
>gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens]
Length = 858
Score = 28.1 bits (61), Expect = 9.8
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 198 GPGVEPGEVGGPCTRALATLKLLSIPLVSLDIPSGWDAETGSDSEDGLRPDVLVSLAA 255
GPG PGE GP LV L++P G A + S++ P V+LA+
Sbjct: 50 GPGARPGEASGPSPPPAEDDSDGDSFLVLLEVPHGGAAAEAAGSQEA-EPGSRVNLAS 106
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,553,563
Number of Sequences: 37866
Number of extensions: 574127
Number of successful extensions: 1254
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1247
Number of HSP's gapped (non-prelim): 13
length of query: 299
length of database: 18,247,518
effective HSP length: 102
effective length of query: 197
effective length of database: 14,385,186
effective search space: 2833881642
effective search space used: 2833881642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.