Search of human proteins with 91984773

Search of human proteins with 91984773

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|91984773 apolipoprotein A-I binding protein precursor [Homo
sapiens]
         (288 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|91984773 apolipoprotein A-I binding protein precursor [Homo s...   590   e-169
gi|94400927 YjeF N-terminal domain containing 3 [Homo sapiens]        229   2e-60
gi|215598561 enhancer of mRNA decapping 3 [Homo sapiens]               35   0.076
gi|215598545 enhancer of mRNA decapping 3 [Homo sapiens]               35   0.076
gi|19923613 enhancer of mRNA decapping 3 [Homo sapiens]                35   0.076
gi|47271475 SPOC domain containing 1 [Homo sapiens]                    30   1.9  
gi|148596977 zinc finger protein 31 [Homo sapiens]                     28   7.2  
gi|5453634 dynein, cytoplasmic, light intermediate polypeptide 2...    28   7.2  
gi|31982899 seven in absentia homolog 2 [Homo sapiens]                 28   9.3  

>gi|91984773 apolipoprotein A-I binding protein precursor [Homo
           sapiens]
          Length = 288

 Score =  590 bits (1521), Expect = e-169
 Identities = 288/288 (100%), Positives = 288/288 (100%)

Query: 1   MSRLRALLGLGLLVAGSRVPRIKSQTIACRSGPTWWGPQRLNSGGRWDSEVMASTVVKYL 60
           MSRLRALLGLGLLVAGSRVPRIKSQTIACRSGPTWWGPQRLNSGGRWDSEVMASTVVKYL
Sbjct: 1   MSRLRALLGLGLLVAGSRVPRIKSQTIACRSGPTWWGPQRLNSGGRWDSEVMASTVVKYL 60

Query: 61  SQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVICGPGNN 120
           SQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVICGPGNN
Sbjct: 61  SQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVICGPGNN 120

Query: 121 GGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPMTIDELY 180
           GGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPMTIDELY
Sbjct: 121 GGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPMTIDELY 180

Query: 181 ELVVDAIFGFSFKGDVREPFHSILSVLKGLTVPIASIDIPSGWDVEKGNAGGIQPDLLIS 240
           ELVVDAIFGFSFKGDVREPFHSILSVLKGLTVPIASIDIPSGWDVEKGNAGGIQPDLLIS
Sbjct: 181 ELVVDAIFGFSFKGDVREPFHSILSVLKGLTVPIASIDIPSGWDVEKGNAGGIQPDLLIS 240

Query: 241 LTAPKKSATQFTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRLQ 288
           LTAPKKSATQFTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRLQ
Sbjct: 241 LTAPKKSATQFTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRLQ 288


>gi|94400927 YjeF N-terminal domain containing 3 [Homo sapiens]
          Length = 299

 Score =  229 bits (584), Expect = 2e-60
 Identities = 115/230 (50%), Positives = 156/230 (67%), Gaps = 3/230 (1%)

Query: 61  SQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVICGPGNN 120
           S  EA A+++EL  +Y+F   QL+EL G + A A+ KA+P  ++SR   TVLV+CGP  N
Sbjct: 70  STAEAAALERELLEDYRFGRQQLVELCGHASAVAVTKAFPLPALSRKQRTVLVVCGPEQN 129

Query: 121 GGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPMTIDELY 180
           G  GLVCARHL++F YEPTI+YP R    L   L TQC+KMDIPFL  +P E   I+E Y
Sbjct: 130 GAVGLVCARHLRVFEYEPTIFYPTRSLDLLHRDLTTQCEKMDIPFLSYLPTEVQLINEAY 189

Query: 181 ELVVDAIFGFSFK-GDVREPFHSILSVLKGLTVPIASIDIPSGWDVEKG--NAGGIQPDL 237
            LVVDA+ G   + G+V  P    L+ LK L++P+ S+DIPSGWD E G  +  G++PD+
Sbjct: 190 GLVVDAVLGPGVEPGEVGGPCTRALATLKLLSIPLVSLDIPSGWDAETGSDSEDGLRPDV 249

Query: 238 LISLTAPKKSATQFTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRL 287
           L+SL APK+ A +F+GR+H++ GRFVP  + +K+ L LP Y  T+CV  L
Sbjct: 250 LVSLAAPKRCAGRFSGRHHFVAGRFVPDDVRRKFALRLPGYTGTDCVAAL 299


>gi|215598561 enhancer of mRNA decapping 3 [Homo sapiens]
          Length = 508

 Score = 35.0 bits (79), Expect = 0.076
 Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 75  EYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSP------PTVLVICGPGNNGGDGLVCA 128
           ++  ++++ +E+ G+ CA+ +A          +P      PTV ++CGP   G  G+ C 
Sbjct: 296 KHGLTLERRLEMTGV-CASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCG 354

Query: 129 RHLKLFGYEPTIYYPK----RPNKPLFTALVTQCQKMDIPFLGEMPAEPMTI 176
           RHL     +  ++ P       +     +L ++ Q   +  L ++P  P+ +
Sbjct: 355 RHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDL 406


>gi|215598545 enhancer of mRNA decapping 3 [Homo sapiens]
          Length = 508

 Score = 35.0 bits (79), Expect = 0.076
 Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 75  EYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSP------PTVLVICGPGNNGGDGLVCA 128
           ++  ++++ +E+ G+ CA+ +A          +P      PTV ++CGP   G  G+ C 
Sbjct: 296 KHGLTLERRLEMTGV-CASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCG 354

Query: 129 RHLKLFGYEPTIYYPK----RPNKPLFTALVTQCQKMDIPFLGEMPAEPMTI 176
           RHL     +  ++ P       +     +L ++ Q   +  L ++P  P+ +
Sbjct: 355 RHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDL 406


>gi|19923613 enhancer of mRNA decapping 3 [Homo sapiens]
          Length = 508

 Score = 35.0 bits (79), Expect = 0.076
 Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 75  EYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSP------PTVLVICGPGNNGGDGLVCA 128
           ++  ++++ +E+ G+ CA+ +A          +P      PTV ++CGP   G  G+ C 
Sbjct: 296 KHGLTLERRLEMTGV-CASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCG 354

Query: 129 RHLKLFGYEPTIYYPK----RPNKPLFTALVTQCQKMDIPFLGEMPAEPMTI 176
           RHL     +  ++ P       +     +L ++ Q   +  L ++P  P+ +
Sbjct: 355 RHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDL 406


>gi|47271475 SPOC domain containing 1 [Homo sapiens]
          Length = 1216

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/34 (41%), Positives = 16/34 (47%)

Query: 116 GPGNNGGDGLVCARHLKLFGYEPTIYYPKRPNKP 149
           GPG  GG G  CA   + FGY P      +P  P
Sbjct: 267 GPGEPGGSGAGCASGTEKFGYLPATGDGPQPGSP 300


>gi|148596977 zinc finger protein 31 [Homo sapiens]
          Length = 1043

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 12/70 (17%)

Query: 24  SQTIACRSGPTWWGPQRLNSGGRWDSEVMASTVVKYLSQEEAQAV---DQELFNE-YQFS 79
           S T     GP +WG   +NSG R       ST    L  E AQA+   D   + E YQ+ 
Sbjct: 263 SNTSEKEQGPEFWGLSLINSGKR-------STADYSLDNEPAQALTWRDSRAWEEQYQWD 315

Query: 80  VDQLMELAGL 89
           V+  M+++G+
Sbjct: 316 VED-MKVSGV 324


>gi|5453634 dynein, cytoplasmic, light intermediate polypeptide 2
           [Homo sapiens]
          Length = 492

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 13/56 (23%)

Query: 172 EPMTIDELYELVVDAIFGFSFKGDVREPFHSILSVLKGLTVPIASIDIPSGWDVEK 227
           E   +D LY+ +V   +GF F                 L V   ++ IP+GWD EK
Sbjct: 276 EEKNLDLLYKYIVHKTYGFHF-------------TTPALVVEKDAVFIPAGWDNEK 318


>gi|31982899 seven in absentia homolog 2 [Homo sapiens]
          Length = 324

 Score = 28.1 bits (61), Expect = 9.3
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 92  ATAIAKAYPPTSMSRSPPTVLVICGPGNNGGDGLVCARHLKL 133
           A A   A  P S S  P    VI GPG  GG G V  +H +L
Sbjct: 34  AAATISAAGPGS-SAVPAAAAVISGPGGGGGAGPVSPQHHEL 74


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,210,232
Number of Sequences: 37866
Number of extensions: 569079
Number of successful extensions: 1183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1174
Number of HSP's gapped (non-prelim): 9
length of query: 288
length of database: 18,247,518
effective HSP length: 101
effective length of query: 187
effective length of database: 14,423,052
effective search space: 2697110724
effective search space used: 2697110724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.