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Search of human proteins with 8923370
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8923370 CKLF-like MARVEL transmembrane domain containing 6
[Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8923370 CKLF-like MARVEL transmembrane domain containing 6 [H... 363 e-101
gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo ... 95 3e-20
gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo ... 95 3e-20
gi|19923993 chemokine-like factor superfamily 5 isoform a [Homo ... 47 9e-06
gi|19923929 CKLF-like MARVEL transmembrane domain containing 7 i... 44 8e-05
gi|239741714 PREDICTED: hypothetical protein XP_002342305 [Homo ... 41 7e-04
gi|13162283 mal, T-cell differentiation protein-like [Homo sapiens] 41 7e-04
gi|115385972 chemokine-like factor superfamily 3 [Homo sapiens] 40 0.001
gi|32130528 chemokine-like factor superfamily 3 [Homo sapiens] 40 0.001
gi|32130526 chemokine-like factor superfamily 3 [Homo sapiens] 40 0.001
gi|21389401 chemokine-like factor superfamily 3 [Homo sapiens] 40 0.001
gi|4505893 proteolipid protein 2 (colonic epithelium-enriched) [... 33 0.10
gi|170016077 ATPase type 13A1 [Homo sapiens] 32 0.40
gi|209862909 G protein-coupled receptor 175 isoform 1 [Homo sapi... 29 2.6
gi|217416358 G protein-coupled receptor 175 isoform 1 [Homo sapi... 29 2.6
gi|150456415 HEAT repeat containing 5A [Homo sapiens] 29 2.6
gi|118766328 transmembrane and tetratricopeptide repeat containi... 28 3.4
gi|118766330 transmembrane and tetratricopeptide repeat containi... 28 3.4
gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo s... 28 3.4
gi|52627153 olfactory receptor, family 4, subfamily A, member 16... 28 3.4
gi|82546841 chemokine-like factor superfamily 5 isoform c [Homo ... 28 4.4
gi|50233850 olfactory receptor, family 6, subfamily S, member 1 ... 28 5.7
gi|163792198 latrophilin 3 precursor [Homo sapiens] 28 5.7
gi|40807489 egf-like module containing, mucin-like, hormone rece... 28 5.7
gi|109637774 ubiquitin carboxyl-terminal hydrolase CYLD isoform ... 27 7.5
gi|14165258 ubiquitin carboxyl-terminal hydrolase CYLD isoform 1... 27 7.5
gi|109637776 ubiquitin carboxyl-terminal hydrolase CYLD isoform ... 27 7.5
gi|239756293 PREDICTED: hypothetical protein [Homo sapiens] 27 7.5
gi|239750869 PREDICTED: hypothetical protein XP_002347589 [Homo ... 27 7.5
gi|239745232 PREDICTED: hypothetical protein XP_002343394 [Homo ... 27 7.5
>gi|8923370 CKLF-like MARVEL transmembrane domain containing 6 [Homo
sapiens]
Length = 183
Score = 363 bits (931), Expect = e-101
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MENGAVYSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVS 60
MENGAVYSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVS
Sbjct: 1 MENGAVYSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVS 60
Query: 61 QCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLA 120
QCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLA
Sbjct: 61 QCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLA 120
Query: 121 SIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRAEALTEP 180
SIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRAEALTEP
Sbjct: 121 SIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRAEALTEP 180
Query: 181 LNA 183
LNA
Sbjct: 181 LNA 183
>gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo
sapiens]
Length = 208
Score = 95.1 bits (235), Expect = 3e-20
Identities = 62/173 (35%), Positives = 96/173 (55%), Gaps = 6/173 (3%)
Query: 7 YSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVSQCTLCG 66
Y PTTE P R +GL R L R LK Q++L+L+AFIC E + C+ C
Sbjct: 27 YQPTTE--PVSQRRGLAGLRCDPDYLRGALGR--LKVAQVILALIAFICIETIMACSPCE 82
Query: 67 GLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLASIIFVS 126
GLYFFEFVSCSAF+++ ++LI++ + R+ +D T + +F +ASI+ +
Sbjct: 83 GLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNLTDLVNTGLSAFLFFIASIVLAA 142
Query: 127 THDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRAEALTE 179
+ R AEIAA++FGF+A+ + ++ T L ++ +R+ A TE
Sbjct: 143 LNHRAGAEIAAVIFGFLATAAYAVN--TFLAVQKWRVSVRQQSTNDYIRARTE 193
>gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo
sapiens]
Length = 234
Score = 95.1 bits (235), Expect = 3e-20
Identities = 62/173 (35%), Positives = 96/173 (55%), Gaps = 6/173 (3%)
Query: 7 YSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVSQCTLCG 66
Y PTTE P R +GL R L R LK Q++L+L+AFIC E + C+ C
Sbjct: 27 YQPTTE--PVSQRRGLAGLRCDPDYLRGALGR--LKVAQVILALIAFICIETIMACSPCE 82
Query: 67 GLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLASIIFVS 126
GLYFFEFVSCSAF+++ ++LI++ + R+ +D T + +F +ASI+ +
Sbjct: 83 GLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNLTDLVNTGLSAFLFFIASIVLAA 142
Query: 127 THDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRAEALTE 179
+ R AEIAA++FGF+A+ + ++ T L ++ +R+ A TE
Sbjct: 143 LNHRAGAEIAAVIFGFLATAAYAVN--TFLAVQKWRVSVRQQSTNDYIRARTE 193
>gi|19923993 chemokine-like factor superfamily 5 isoform a [Homo
sapiens]
Length = 156
Score = 47.0 bits (110), Expect = 9e-06
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 40 VLKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDT 99
+L +L L+L+ FIC + L F ++L L +Y T +Y+R D
Sbjct: 36 ILLETELALTLIIFICFTASISAYMAAALL--------EFFITLAFLFLYATQYYQRFDR 87
Query: 100 TKVKSSDFYITLGTGCVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLD 151
DF + +FL+ S F + R A IAA VFG I +F D
Sbjct: 88 INWPCLDFLRCVSAIIIFLVVS--FAAVTSRDGAAIAAFVFGIILVSIFAYD 137
>gi|19923929 CKLF-like MARVEL transmembrane domain containing 7
isoform a [Homo sapiens]
Length = 175
Score = 43.9 bits (102), Expect = 8e-05
Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 10/155 (6%)
Query: 1 MENGAVYSPTTEEDPGPARGPRSGLA---AYFFMGRLPLL-----RRVLKGLQLLLSLLA 52
M +GA TT G A GP +G A A G L L +LK Q++ L+A
Sbjct: 1 MSHGAGLVRTTCSS-GSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIA 59
Query: 53 FICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLG 112
FIC S T +FE V+ ++ L +V+ FY + S+ L
Sbjct: 60 FICVRS-SLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLI 118
Query: 113 TGCVFLLASIIFVSTHDRTSAEIAAIVFGFIASFM 147
+ L+ASI+ S S +A +FGF+A+F+
Sbjct: 119 GTLLLLIASIVAASKSYNQSGLVAGAIFGFMATFL 153
>gi|239741714 PREDICTED: hypothetical protein XP_002342305 [Homo
sapiens]
Length = 231
Score = 40.8 bits (94), Expect = 7e-04
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 15/96 (15%)
Query: 73 FVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLASIIFVSTHDRTS 132
+VS ++FL+SL+ L+ Y FY+R ++ +V S ++ T TG +++ A+++ V H
Sbjct: 139 YVSLTSFLISLMFLLSYLFGFYKRFESWRVLDSLYHGT--TGILYMSAAVLQV--HATIV 194
Query: 133 AE-----------IAAIVFGFIASFMFLLDFITMLY 157
+E AA F FIA+ +++L ++ Y
Sbjct: 195 SEKLLDPRIYYINSAASFFAFIATLLYILHAFSIYY 230
>gi|13162283 mal, T-cell differentiation protein-like [Homo sapiens]
Length = 153
Score = 40.8 bits (94), Expect = 7e-04
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 15/96 (15%)
Query: 73 FVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLASIIFVSTHDRTS 132
+VS ++FL+SL+ L+ Y FY+R ++ +V S ++ T TG +++ A+++ V H
Sbjct: 61 YVSLTSFLISLMFLLSYLFGFYKRFESWRVLDSLYHGT--TGILYMSAAVLQV--HATIV 116
Query: 133 AE-----------IAAIVFGFIASFMFLLDFITMLY 157
+E AA F FIA+ +++L ++ Y
Sbjct: 117 SEKLLDPRIYYINSAASFFAFIATLLYILHAFSIYY 152
>gi|115385972 chemokine-like factor superfamily 3 [Homo sapiens]
Length = 182
Score = 40.0 bits (92), Expect = 0.001
Identities = 43/157 (27%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 9 PTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVSQCTLCGGL 68
P + DP PA G R G A + GL+ LL AF+C GL
Sbjct: 6 PDPDPDPEPAGGSRPGPA--------------VPGLRALLPARAFLCSLKGRLLLAESGL 51
Query: 69 YFFEFV-----SCSAFL--------LSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGC 115
F F+ S SAFL L+L L ++ DF +
Sbjct: 52 SFITFICYVASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAAL 111
Query: 116 VFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDF 152
++ SI ++ + A AA VFGF A+ +F DF
Sbjct: 112 IYFAISITAIAKYS-DGASKAAGVFGFFATIVFATDF 147
>gi|32130528 chemokine-like factor superfamily 3 [Homo sapiens]
Length = 182
Score = 40.0 bits (92), Expect = 0.001
Identities = 43/157 (27%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 9 PTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVSQCTLCGGL 68
P + DP PA G R G A + GL+ LL AF+C GL
Sbjct: 6 PDPDPDPEPAGGSRPGPA--------------VPGLRALLPARAFLCSLKGRLLLAESGL 51
Query: 69 YFFEFV-----SCSAFL--------LSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGC 115
F F+ S SAFL L+L L ++ DF +
Sbjct: 52 SFITFICYVASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAAL 111
Query: 116 VFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDF 152
++ SI ++ + A AA VFGF A+ +F DF
Sbjct: 112 IYFAISITAIAKYS-DGASKAAGVFGFFATIVFATDF 147
>gi|32130526 chemokine-like factor superfamily 3 [Homo sapiens]
Length = 182
Score = 40.0 bits (92), Expect = 0.001
Identities = 43/157 (27%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 9 PTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVSQCTLCGGL 68
P + DP PA G R G A + GL+ LL AF+C GL
Sbjct: 6 PDPDPDPEPAGGSRPGPA--------------VPGLRALLPARAFLCSLKGRLLLAESGL 51
Query: 69 YFFEFV-----SCSAFL--------LSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGC 115
F F+ S SAFL L+L L ++ DF +
Sbjct: 52 SFITFICYVASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAAL 111
Query: 116 VFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDF 152
++ SI ++ + A AA VFGF A+ +F DF
Sbjct: 112 IYFAISITAIAKYS-DGASKAAGVFGFFATIVFATDF 147
>gi|21389401 chemokine-like factor superfamily 3 [Homo sapiens]
Length = 182
Score = 40.0 bits (92), Expect = 0.001
Identities = 43/157 (27%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 9 PTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVSQCTLCGGL 68
P + DP PA G R G A + GL+ LL AF+C GL
Sbjct: 6 PDPDPDPEPAGGSRPGPA--------------VPGLRALLPARAFLCSLKGRLLLAESGL 51
Query: 69 YFFEFV-----SCSAFL--------LSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGC 115
F F+ S SAFL L+L L ++ DF +
Sbjct: 52 SFITFICYVASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAAL 111
Query: 116 VFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDF 152
++ SI ++ + A AA VFGF A+ +F DF
Sbjct: 112 IYFAISITAIAKYS-DGASKAAGVFGFFATIVFATDF 147
>gi|4505893 proteolipid protein 2 (colonic epithelium-enriched)
[Homo sapiens]
Length = 152
Score = 33.5 bits (75), Expect = 0.10
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 39 RVLKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVD 98
R KG+ L ++ + + + G + +S +L+ + +VY + ++
Sbjct: 21 RTRKGILLFAEIILCLVILICFSASTPG----YSSLSVIEMILAAIFFVVYMCDLHTKIP 76
Query: 99 TTKVKSSDFYITLGTGCVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLD 151
SDF+ TL ++L+ SI+ V ++I A V G IA+ +F D
Sbjct: 77 FINWPWSDFFRTLIAAILYLITSIV-VLVERGNHSKIVAGVLGLIATCLFGYD 128
>gi|170016077 ATPase type 13A1 [Homo sapiens]
Length = 1204
Score = 31.6 bits (70), Expect = 0.40
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 48 LSLLAFICEEVVS-QCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSD 106
LS + IC + +CTL L F+ ++ +A +L+ ++Y VK SD
Sbjct: 964 LSSIQCICHVIKQGRCTLVTTLQMFKILALNALILAYSQSVLY---------LEGVKFSD 1014
Query: 107 FYITLGTGCVFLLASIIFVS--------THDRTSAEIAAIVFGFIASFMFLLDFITMLYE 158
F TL + L +F+S + +R I + F + F++++Y
Sbjct: 1015 FQATLQG--LLLAGCFLFISRSKPLKTLSRERPLPNIFNLYTILTVMLQFFVHFLSLVYL 1072
Query: 159 KRQESQLRKPE 169
R E+Q R PE
Sbjct: 1073 YR-EAQARSPE 1082
>gi|209862909 G protein-coupled receptor 175 isoform 1 [Homo
sapiens]
Length = 373
Score = 28.9 bits (63), Expect = 2.6
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 66 GGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLG 112
GG F+ SC FL+ L++I+ TP ER+ +S FY+ G
Sbjct: 189 GGRQFWLVSSCFFFLVYSLVVILPKTPLKERISLPSRRS--FYVYAG 233
>gi|217416358 G protein-coupled receptor 175 isoform 1 [Homo
sapiens]
Length = 373
Score = 28.9 bits (63), Expect = 2.6
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 66 GGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLG 112
GG F+ SC FL+ L++I+ TP ER+ +S FY+ G
Sbjct: 189 GGRQFWLVSSCFFFLVYSLVVILPKTPLKERISLPSRRS--FYVYAG 233
>gi|150456415 HEAT repeat containing 5A [Homo sapiens]
Length = 1753
Score = 28.9 bits (63), Expect = 2.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 145 SFMFLLDFITMLYEKRQESQLRKPENTTRAEALTE 179
S+ ++ + + EK QE RKPENT E E
Sbjct: 1601 SYPYIYSLASCIMEKLQEIDKRKPENTAELEIFQE 1635
>gi|118766328 transmembrane and tetratricopeptide repeat containing
4 isoform 2 [Homo sapiens]
Length = 741
Score = 28.5 bits (62), Expect = 3.4
Identities = 40/165 (24%), Positives = 60/165 (36%), Gaps = 35/165 (21%)
Query: 31 MGRLPLLR-----RVLKGLQLLLSLLAFICEEVVSQ-------CTLCGGLYFFEFVSCSA 78
MG +PL++ RV+ L L+ IC+ + S+ TL G F+ S
Sbjct: 341 MGCIPLIKSISDWRVIALAALWFCLIGLICQALCSEDGHKRRILTLGLGFLVIPFLPASN 400
Query: 79 FLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLASIIFVSTHDRTSAEIAAI 138
+ ++ ERV Y+ CV L +S H + IAA+
Sbjct: 401 LFFRVGFVVA------ERV---------LYLPSVGYCVLLTFGFGALSKHTKKKKLIAAV 445
Query: 139 VFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRAEALTEPLNA 183
V G + FI L + + R E R+ PLNA
Sbjct: 446 VLGIL--------FINTLRCVLRSGEWRSEEQLFRSALSVCPLNA 482
>gi|118766330 transmembrane and tetratricopeptide repeat containing
4 isoform 1 [Homo sapiens]
Length = 760
Score = 28.5 bits (62), Expect = 3.4
Identities = 40/165 (24%), Positives = 60/165 (36%), Gaps = 35/165 (21%)
Query: 31 MGRLPLLR-----RVLKGLQLLLSLLAFICEEVVSQ-------CTLCGGLYFFEFVSCSA 78
MG +PL++ RV+ L L+ IC+ + S+ TL G F+ S
Sbjct: 360 MGCIPLIKSISDWRVIALAALWFCLIGLICQALCSEDGHKRRILTLGLGFLVIPFLPASN 419
Query: 79 FLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLASIIFVSTHDRTSAEIAAI 138
+ ++ ERV Y+ CV L +S H + IAA+
Sbjct: 420 LFFRVGFVVA------ERV---------LYLPSVGYCVLLTFGFGALSKHTKKKKLIAAV 464
Query: 139 VFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRAEALTEPLNA 183
V G + FI L + + R E R+ PLNA
Sbjct: 465 VLGIL--------FINTLRCVLRSGEWRSEEQLFRSALSVCPLNA 501
>gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo
sapiens]
Length = 412
Score = 28.5 bits (62), Expect = 3.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 9 PTTEEDPGPARGPRSGLAAY 28
P T+ PGPA+G SGL A+
Sbjct: 257 PATQSSPGPAQGSTSGLPAH 276
>gi|52627153 olfactory receptor, family 4, subfamily A, member 16
[Homo sapiens]
Length = 328
Score = 28.5 bits (62), Expect = 3.4
Identities = 14/66 (21%), Positives = 29/66 (43%)
Query: 21 PRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFL 80
P G YFF+ L L+ + ++ +C+++ + C G F E + A +
Sbjct: 51 PSLGSLMYFFLAYLSLMDAIYSTAMSPKLMIDLLCDKIAISLSACMGQLFIEHLLGGAEV 110
Query: 81 LSLLIL 86
L+++
Sbjct: 111 FLLVVM 116
>gi|82546841 chemokine-like factor superfamily 5 isoform c [Homo
sapiens]
Length = 125
Score = 28.1 bits (61), Expect = 4.4
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 40 VLKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVD 98
+L +L L+L+ FIC + L F ++L L +Y T +Y+R D
Sbjct: 36 ILLETELALTLIIFICFTASISAYMAAALL--------EFFITLAFLFLYATQYYQRFD 86
>gi|50233850 olfactory receptor, family 6, subfamily S, member 1
[Homo sapiens]
Length = 331
Score = 27.7 bits (60), Expect = 5.7
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 28 YFFMGRLPLLRRVLKGLQLLLSLLAFIC-EEVVSQCTLCGGLYFFEFVSCSAFLL 81
YFF+G L L +L + + L F+ + +S YF+ F+ S FLL
Sbjct: 62 YFFLGNLSCLEILLTSVIIPKMLSNFLSRQHTISFAACITQFYFYFFLGASEFLL 116
>gi|163792198 latrophilin 3 precursor [Homo sapiens]
Length = 1469
Score = 27.7 bits (60), Expect = 5.7
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 115 CVFL-LASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYE 158
C+ L +A ++F+ +RT IA VF + F FL F M E
Sbjct: 917 CISLFVAELLFLIGINRTDQPIACAVFAALLHFFFLAAFTWMFLE 961
>gi|40807489 egf-like module containing, mucin-like, hormone
receptor-like sequence 1 [Homo sapiens]
Length = 886
Score = 27.7 bits (60), Expect = 5.7
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 74 VSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLASIIFVSTHDRTSA 133
+S ++SL+ L++ F + +++ + Y+ L LLA +F++ +T
Sbjct: 605 ISHVGIIISLVCLVLAIATF---LLCRSIRNHNTYLHLHLCVCLLLAKTLFLAGIHKTDN 661
Query: 134 EIA-AIVFGFIASFMFLLDFITMLYE 158
++ AI+ GF+ ++FL F ML E
Sbjct: 662 KMGCAIIAGFL-HYLFLACFFWMLVE 686
>gi|109637774 ubiquitin carboxyl-terminal hydrolase CYLD isoform 2
[Homo sapiens]
Length = 953
Score = 27.3 bits (59), Expect = 7.5
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 36 LLRRVLKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSC 76
L +++ L+L ++ L E+ QC +CGGL +E C
Sbjct: 762 LFKKIFPSLELNITDLL---EDTPRQCRICGGLAMYECREC 799
>gi|14165258 ubiquitin carboxyl-terminal hydrolase CYLD isoform 1
[Homo sapiens]
Length = 956
Score = 27.3 bits (59), Expect = 7.5
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 36 LLRRVLKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSC 76
L +++ L+L ++ L E+ QC +CGGL +E C
Sbjct: 765 LFKKIFPSLELNITDLL---EDTPRQCRICGGLAMYECREC 802
>gi|109637776 ubiquitin carboxyl-terminal hydrolase CYLD isoform 2
[Homo sapiens]
Length = 953
Score = 27.3 bits (59), Expect = 7.5
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 36 LLRRVLKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSC 76
L +++ L+L ++ L E+ QC +CGGL +E C
Sbjct: 762 LFKKIFPSLELNITDLL---EDTPRQCRICGGLAMYECREC 799
>gi|239756293 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 27.3 bits (59), Expect = 7.5
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 32 GRLPLLRRVLKGLQLLLSLLAFICEEVVSQCTL 64
G + LL+R+ G+QLLLSLL +C +V + T+
Sbjct: 188 GTILLLQRLRHGVQLLLSLLD-LCADVALELTV 219
>gi|239750869 PREDICTED: hypothetical protein XP_002347589 [Homo
sapiens]
Length = 354
Score = 27.3 bits (59), Expect = 7.5
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 32 GRLPLLRRVLKGLQLLLSLLAFICEEVVSQCTL 64
G + LL+R+ G+QLLLSLL +C +V + T+
Sbjct: 268 GTILLLQRLRHGVQLLLSLLD-LCADVALELTV 299
>gi|239745232 PREDICTED: hypothetical protein XP_002343394 [Homo
sapiens]
Length = 274
Score = 27.3 bits (59), Expect = 7.5
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 32 GRLPLLRRVLKGLQLLLSLLAFICEEVVSQCTL 64
G + LL+R+ G+QLLLSLL +C +V + T+
Sbjct: 188 GTILLLQRLRHGVQLLLSLLD-LCADVALELTV 219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.141 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,585,956
Number of Sequences: 37866
Number of extensions: 252203
Number of successful extensions: 1037
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 53
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.