Search of human proteins with 89051032

Search of human proteins with 89051032

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like
4-like [Homo sapiens]
         (208 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like ...   420   e-118
gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like ...   418   e-117
gi|211059437 hypothetical protein LOC284428 [Homo sapiens]            415   e-116
gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo sa...   407   e-114
gi|113428063 PREDICTED: similar to methyl-CpG binding domain pro...   404   e-113
gi|169217724 PREDICTED: similar to methyl-CpG binding domain pro...   376   e-105
gi|226502212 methyl-CpG binding domain protein 3-like [Homo sapi...   112   3e-25
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s...    79   4e-15
gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]          79   4e-15
gi|5902064 rabphilin 3A-like (without C2 domains) [Homo sapiens]       35   0.035
gi|148747864 JAW1-related protein isoform a [Homo sapiens]             33   0.22 
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]     32   0.38 
gi|150170699 kinesin family member 26A [Homo sapiens]                  32   0.38 
gi|193788732 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193788730 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193788728 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193788724 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193788720 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|120433602 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193788548 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193788544 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193788542 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193788540 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193788538 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193788536 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193794832 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193788534 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193788532 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193794830 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 
gi|193788530 calcium channel, voltage-dependent, L type, alpha 1...    32   0.50 

>gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like
           4-like [Homo sapiens]
          Length = 208

 Score =  420 bits (1080), Expect = e-118
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
           MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1   MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60

Query: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
           VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120

Query: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
           GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180

Query: 181 RVKKARERLAKALQADRLARQAEMLTCR 208
           RVKKARERLAKALQADRLARQAEMLTCR
Sbjct: 181 RVKKARERLAKALQADRLARQAEMLTCR 208


>gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like
           3-like [Homo sapiens]
          Length = 208

 Score =  418 bits (1074), Expect = e-117
 Identities = 207/208 (99%), Positives = 207/208 (99%)

Query: 1   MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
           MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1   MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60

Query: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
           VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120

Query: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
           GTAGESLDRAGAERVR PLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180

Query: 181 RVKKARERLAKALQADRLARQAEMLTCR 208
           RVKKARERLAKALQADRLARQAEMLTCR
Sbjct: 181 RVKKARERLAKALQADRLARQAEMLTCR 208


>gi|211059437 hypothetical protein LOC284428 [Homo sapiens]
          Length = 208

 Score =  415 bits (1066), Expect = e-116
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 1   MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
           MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1   MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60

Query: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
           VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120

Query: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
           GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180

Query: 181 RVKKARERLAKALQADRLARQAEMLT 206
           RVKKARERLAKALQADRLARQAEMLT
Sbjct: 181 RVKKARERLAKALQADRLARQAEMLT 206


>gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo
           sapiens]
          Length = 208

 Score =  407 bits (1046), Expect = e-114
 Identities = 203/206 (98%), Positives = 204/206 (99%)

Query: 1   MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
           MGEPAFTSFPS PVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1   MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60

Query: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
           VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120

Query: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
           GTAGESLDRAGAERVR PLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180

Query: 181 RVKKARERLAKALQADRLARQAEMLT 206
           RVKKARERLAKALQADRLAR+AEMLT
Sbjct: 181 RVKKARERLAKALQADRLARRAEMLT 206


>gi|113428063 PREDICTED: similar to methyl-CpG binding domain
           protein 3-like 2 [Homo sapiens]
          Length = 204

 Score =  404 bits (1037), Expect = e-113
 Identities = 201/204 (98%), Positives = 202/204 (99%)

Query: 1   MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
           MGEPAFTSFPS PVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1   MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60

Query: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
           VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120

Query: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
           GTAGESLDRAGAERVR PLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180

Query: 181 RVKKARERLAKALQADRLARQAEM 204
           RVKKARERLAKALQADRLAR+AEM
Sbjct: 181 RVKKARERLAKALQADRLARRAEM 204


>gi|169217724 PREDICTED: similar to methyl-CpG binding domain
           protein 3-like 2, partial [Homo sapiens]
          Length = 193

 Score =  376 bits (966), Expect = e-105
 Identities = 187/191 (97%), Positives = 189/191 (98%)

Query: 16  GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75
           GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR
Sbjct: 1   GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 60

Query: 76  KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135
           KGDEHLEKPQQLCAYR+LQALQPCSSQGEGSSPLHLESVLSILAPGTA ESLDRAGAERV
Sbjct: 61  KGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERV 120

Query: 136 RIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 195
           R PLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA
Sbjct: 121 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 180

Query: 196 DRLARQAEMLT 206
           DRLAR+AEMLT
Sbjct: 181 DRLARRAEMLT 191


>gi|226502212 methyl-CpG binding domain protein 3-like [Homo
           sapiens]
          Length = 194

 Score =  112 bits (279), Expect = 3e-25
 Identities = 77/179 (43%), Positives = 100/179 (55%), Gaps = 5/179 (2%)

Query: 28  QKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQL 87
           Q+K+   + +   +    +++P+R++S  F+RPVTRI  HP N+VR  + +E LEKPQQ+
Sbjct: 6   QRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQV 65

Query: 88  CAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESL--DRAGAERVRIPLEPTPGR 145
           C  RRLQ LQ  SS GE SS L L + L  L P   G SL  D A       P+      
Sbjct: 66  CWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMPHLACS 125

Query: 146 FPAVAGGPTPGMGCQLPPPLSGQ-LVTPADIRRQARRVKKARERLAKALQADRLARQAE 203
             AV   P  G+G  +   L  Q LVT  DIR+Q  +VK  RERLA AL AD LA +AE
Sbjct: 126 SDAVEIIPAEGVG--ISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANEAE 182


>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
           sapiens]
          Length = 411

 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 7/187 (3%)

Query: 22  MMPWALQK-KREIHMAKAHRRRAA---RSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKG 77
           MMP  LQK K+ +     ++ +      + LP+R T+ IF++PVT++ +HP N+V +   
Sbjct: 213 MMPSKLQKNKQRLRNDPLNQNKGKPDLNTTLPIRQTASIFKQPVTKVTNHPSNKV-KSDP 271

Query: 78  DEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRI 137
               E+P+QL   +RLQ L       +    + L   L  + PG+  E+L  A A  +  
Sbjct: 272 QRMNEQPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVASALHT 331

Query: 138 PLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQAD 196
              P  G+  A A    P +      PL    +VT  DIR+Q  RV++ R++L +AL AD
Sbjct: 332 SSAPITGQVSA-AVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLEEALMAD 390

Query: 197 RLARQAE 203
            L+R A+
Sbjct: 391 ILSRAAD 397


>gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]
          Length = 291

 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 3/190 (1%)

Query: 16  GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75
           GK+  + M  + Q+ R     +   +    +ALP+R T+ IF++PVT+I +HP N+V + 
Sbjct: 67  GKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKV-KS 125

Query: 76  KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135
              + +++P+QL   ++L  L       E    + L   L  + PG   E+L  A A  +
Sbjct: 126 DPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASAL 185

Query: 136 RIPLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQ 194
                P  G+  A A    PG+      PL    +VT  DIR+Q   V++ R+RL +AL 
Sbjct: 186 HTSTMPITGQLSA-AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALM 244

Query: 195 ADRLARQAEM 204
           AD LA   E+
Sbjct: 245 ADMLAHVEEL 254


>gi|5902064 rabphilin 3A-like (without C2 domains) [Homo sapiens]
          Length = 315

 Score = 35.4 bits (80), Expect = 0.035
 Identities = 31/97 (31%), Positives = 37/97 (38%), Gaps = 14/97 (14%)

Query: 68  PDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGE-S 126
           P   VR RKGD+  ++        R+    P         P HL    S LA G  G  S
Sbjct: 226 PSTGVRDRKGDKPWKESGGSVEAPRMGFTHP---------PGHLSGCQSSLASGETGTGS 276

Query: 127 LDRAGAERV----RIPLEPTPGRFPAVAGGPTPGMGC 159
            D  G  R     R P++ TPGR PA    P     C
Sbjct: 277 ADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGPSSC 313


>gi|148747864 JAW1-related protein isoform a [Homo sapiens]
          Length = 903

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 120 PGTAGESLDRAGAERV----RIPLEPTPGRFPAVAGGPTPGMGCQLPPP--LSGQLVTP- 172
           PGT G S   A    +      P EP   + PA  G PT G+ C   P   L+G   +P 
Sbjct: 32  PGTRGHSQQEAAMPHIPEDEEPPGEPQAAQSPAGQGPPTAGVSCSPTPTIVLTGDATSPE 91

Query: 173 -ADIRRQARRVKKARERLA 190
               +  A RV    +RL+
Sbjct: 92  GETDKNLANRVHSPHKRLS 110


>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
          Length = 271

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 43/142 (30%), Positives = 57/142 (40%), Gaps = 25/142 (17%)

Query: 63  RIRSHPDNQVR-RRKGDEHLEKP-QQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
           R+ + P   +R +R GD  L     +L  YR     QP SS    +S     S  S  AP
Sbjct: 9   RVNAVPGTMLRPQRPGDLQLGASLYELVGYR-----QPPSSSSSSTSSTSSTSSSSTTAP 63

Query: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
                 L +A  E+   P EP          GP PG G    P  S +     + ++Q R
Sbjct: 64  -----LLPKAAREKPEAPAEPP---------GPGPGSGAH--PGGSARPDAKEEQQQQLR 107

Query: 181 RVKKARERLAKALQADRLARQA 202
           R   +RER  K +Q   LA  A
Sbjct: 108 RKINSRER--KRMQDLNLAMDA 127


>gi|150170699 kinesin family member 26A [Homo sapiens]
          Length = 1882

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 103  GEGSSPLHLESVLSILAPGTAGESLDR-----AGAERVRIPLEPTP-----GRFPAVAGG 152
            G  SS     S     +PG    SL        G +R R+   P P     GR P++   
Sbjct: 1671 GSASSAPDSMSESGAASPGARTRSLKSPKKRATGLQRRRLIPAPLPDTTALGRKPSL--- 1727

Query: 153  PTPGMGCQLPPPLSGQLVTPADIR 176
              PG    LPPPL+G L  P +I+
Sbjct: 1728 --PGQWVDLPPPLAGSLKEPFEIK 1749


>gi|193788732 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 5 [Homo sapiens]
          Length = 2166

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1709 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1764

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1765 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1823

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1824 PPLSPAIRVQEV 1835


>gi|193788730 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 4 [Homo sapiens]
          Length = 2173

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1795

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1796 PPLSPAIRVQEV 1807


>gi|193788728 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 3 [Homo sapiens]
          Length = 2179

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1722 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1777

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1778 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1836

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1837 PPLSPAIRVQEV 1848


>gi|193788724 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 2 [Homo sapiens]
          Length = 2186

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1729 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1784

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1785 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1843

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1844 PPLSPAIRVQEV 1855


>gi|193788720 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 1 [Homo sapiens]
          Length = 2221

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1729 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1784

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1785 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1843

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1844 PPLSPAIRVQEV 1855


>gi|120433602 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 18 [Homo sapiens]
          Length = 2138

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1795

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1796 PPLSPAIRVQEV 1807


>gi|193788548 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 20 [Homo sapiens]
          Length = 2127

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1670 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1725

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1726 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1784

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1785 PPLSPAIRVQEV 1796


>gi|193788544 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 19 [Homo sapiens]
          Length = 2135

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1678 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1733

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1734 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1792

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1793 PPLSPAIRVQEV 1804


>gi|193788542 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 17 [Homo sapiens]
          Length = 2138

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1795

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1796 PPLSPAIRVQEV 1807


>gi|193788540 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 16 [Homo sapiens]
          Length = 2138

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1795

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1796 PPLSPAIRVQEV 1807


>gi|193788538 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 15 [Homo sapiens]
          Length = 2138

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1795

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1796 PPLSPAIRVQEV 1807


>gi|193788536 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 14 [Homo sapiens]
          Length = 2138

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1795

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1796 PPLSPAIRVQEV 1807


>gi|193794832 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoforom 13 [Homo sapiens]
          Length = 2144

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1687 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1742

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1743 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1801

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1802 PPLSPAIRVQEV 1813


>gi|193788534 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 12 [Homo sapiens]
          Length = 2146

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1689 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1744

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1745 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1803

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1804 PPLSPAIRVQEV 1815


>gi|193788532 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 11 [Homo sapiens]
          Length = 2146

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1689 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1744

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1745 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1803

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1804 PPLSPAIRVQEV 1815


>gi|193794830 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 10 [Homo sapiens]
          Length = 2155

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1698 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1753

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1754 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1812

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1813 PPLSPAIRVQEV 1824


>gi|193788530 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 9 [Homo sapiens]
          Length = 2157

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1700 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1755

Query: 102  QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
            QG+  SP H + V S   P    + G + +   A    +   P P  +P+       G G
Sbjct: 1756 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1814

Query: 159  CQLPPPLSGQLV 170
              L P +  Q V
Sbjct: 1815 PPLSPAIRVQEV 1826


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,503,222
Number of Sequences: 37866
Number of extensions: 509708
Number of successful extensions: 2343
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 2252
Number of HSP's gapped (non-prelim): 198
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.