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Search of human proteins with 82659091
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|82659091 staufen isoform c [Homo sapiens]
(502 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|82659091 staufen isoform c [Homo sapiens] 1011 0.0
gi|82659089 staufen isoform a [Homo sapiens] 992 0.0
gi|82659087 staufen isoform b [Homo sapiens] 992 0.0
gi|82659085 staufen isoform a [Homo sapiens] 992 0.0
gi|82659083 staufen isoform a [Homo sapiens] 992 0.0
gi|7657625 staufen homolog 2 [Homo sapiens] 364 e-100
gi|19743838 TAR RNA binding protein 2 isoform b [Homo sapiens] 77 4e-14
gi|19743840 TAR RNA binding protein 2 isoform a [Homo sapiens] 77 4e-14
gi|85068512 TAR RNA binding protein 2 isoform b [Homo sapiens] 77 4e-14
gi|213417919 protein kinase, interferon-inducible double strande... 69 1e-11
gi|213417911 protein kinase, interferon-inducible double strande... 69 1e-11
gi|4505581 protein kinase, interferon-inducible double stranded ... 69 1e-11
gi|24234756 interleukin enhancer binding factor 3 isoform c [Hom... 57 3e-08
gi|24234753 interleukin enhancer binding factor 3 isoform b [Hom... 57 3e-08
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 57 3e-08
gi|212549555 interleukin enhancer binding factor 3 isoform e [Ho... 57 4e-08
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 57 4e-08
gi|237681091 RNA-specific adenosine deaminase B1 isoform 7 [Homo... 56 7e-08
gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo s... 56 7e-08
gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo s... 56 7e-08
gi|4501919 RNA-specific adenosine deaminase B1 isoform 1 [Homo s... 56 7e-08
gi|21361745 spermatid perinuclear RNA binding protein [Homo sapi... 55 1e-07
gi|208431829 eukaryotic translation initiation factor 2-alpha ki... 44 3e-04
gi|208431827 eukaryotic translation initiation factor 2-alpha ki... 44 3e-04
gi|4506103 eukaryotic translation initiation factor 2-alpha kina... 44 3e-04
gi|8922077 adenosine deaminase, RNA-specific, B2 [Homo sapiens] 42 0.001
gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo sa... 40 0.006
gi|70167113 adenosine deaminase, RNA-specific isoform d [Homo sa... 39 0.014
gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo sa... 39 0.014
gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo sa... 39 0.014
>gi|82659091 staufen isoform c [Homo sapiens]
Length = 502
Score = 1011 bits (2613), Expect = 0.0
Identities = 502/502 (100%), Positives = 502/502 (100%)
Query: 1 MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60
MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK
Sbjct: 1 MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60
Query: 61 GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN 120
GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN
Sbjct: 61 GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN 120
Query: 121 FESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL 180
FESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL
Sbjct: 121 FESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL 180
Query: 181 PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR 240
PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR
Sbjct: 181 PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR 240
Query: 241 RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK 300
RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK
Sbjct: 241 RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK 300
Query: 301 KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH 360
KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH
Sbjct: 301 KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH 360
Query: 361 TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY 420
TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY
Sbjct: 361 TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY 420
Query: 421 LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE 480
LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE
Sbjct: 421 LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE 480
Query: 481 LDQQSTEMPRTGNGPMSVCGRC 502
LDQQSTEMPRTGNGPMSVCGRC
Sbjct: 481 LDQQSTEMPRTGNGPMSVCGRC 502
>gi|82659089 staufen isoform a [Homo sapiens]
Length = 496
Score = 992 bits (2565), Expect = 0.0
Identities = 496/502 (98%), Positives = 496/502 (98%), Gaps = 6/502 (1%)
Query: 1 MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60
MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK
Sbjct: 1 MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60
Query: 61 GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN 120
GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN
Sbjct: 61 GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN 120
Query: 121 FESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL 180
FE VARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL
Sbjct: 121 FE------VARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL 174
Query: 181 PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR 240
PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR
Sbjct: 175 PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR 234
Query: 241 RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK 300
RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK
Sbjct: 235 RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK 294
Query: 301 KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH 360
KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH
Sbjct: 295 KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH 354
Query: 361 TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY 420
TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY
Sbjct: 355 TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY 414
Query: 421 LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE 480
LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE
Sbjct: 415 LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE 474
Query: 481 LDQQSTEMPRTGNGPMSVCGRC 502
LDQQSTEMPRTGNGPMSVCGRC
Sbjct: 475 LDQQSTEMPRTGNGPMSVCGRC 496
>gi|82659087 staufen isoform b [Homo sapiens]
Length = 577
Score = 992 bits (2565), Expect = 0.0
Identities = 496/502 (98%), Positives = 496/502 (98%), Gaps = 6/502 (1%)
Query: 1 MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60
MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK
Sbjct: 82 MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 141
Query: 61 GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN 120
GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN
Sbjct: 142 GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN 201
Query: 121 FESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL 180
FE VARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL
Sbjct: 202 FE------VARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL 255
Query: 181 PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR 240
PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR
Sbjct: 256 PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR 315
Query: 241 RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK 300
RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK
Sbjct: 316 RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK 375
Query: 301 KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH 360
KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH
Sbjct: 376 KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH 435
Query: 361 TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY 420
TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY
Sbjct: 436 TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY 495
Query: 421 LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE 480
LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE
Sbjct: 496 LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE 555
Query: 481 LDQQSTEMPRTGNGPMSVCGRC 502
LDQQSTEMPRTGNGPMSVCGRC
Sbjct: 556 LDQQSTEMPRTGNGPMSVCGRC 577
>gi|82659085 staufen isoform a [Homo sapiens]
Length = 496
Score = 992 bits (2565), Expect = 0.0
Identities = 496/502 (98%), Positives = 496/502 (98%), Gaps = 6/502 (1%)
Query: 1 MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60
MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK
Sbjct: 1 MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60
Query: 61 GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN 120
GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN
Sbjct: 61 GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN 120
Query: 121 FESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL 180
FE VARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL
Sbjct: 121 FE------VARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL 174
Query: 181 PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR 240
PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR
Sbjct: 175 PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR 234
Query: 241 RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK 300
RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK
Sbjct: 235 RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK 294
Query: 301 KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH 360
KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH
Sbjct: 295 KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH 354
Query: 361 TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY 420
TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY
Sbjct: 355 TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY 414
Query: 421 LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE 480
LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE
Sbjct: 415 LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE 474
Query: 481 LDQQSTEMPRTGNGPMSVCGRC 502
LDQQSTEMPRTGNGPMSVCGRC
Sbjct: 475 LDQQSTEMPRTGNGPMSVCGRC 496
>gi|82659083 staufen isoform a [Homo sapiens]
Length = 496
Score = 992 bits (2565), Expect = 0.0
Identities = 496/502 (98%), Positives = 496/502 (98%), Gaps = 6/502 (1%)
Query: 1 MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60
MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK
Sbjct: 1 MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60
Query: 61 GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN 120
GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN
Sbjct: 61 GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN 120
Query: 121 FESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL 180
FE VARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL
Sbjct: 121 FE------VARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL 174
Query: 181 PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR 240
PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR
Sbjct: 175 PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR 234
Query: 241 RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK 300
RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK
Sbjct: 235 RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK 294
Query: 301 KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH 360
KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH
Sbjct: 295 KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH 354
Query: 361 TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY 420
TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY
Sbjct: 355 TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY 414
Query: 421 LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE 480
LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE
Sbjct: 415 LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE 474
Query: 481 LDQQSTEMPRTGNGPMSVCGRC 502
LDQQSTEMPRTGNGPMSVCGRC
Sbjct: 475 LDQQSTEMPRTGNGPMSVCGRC 496
>gi|7657625 staufen homolog 2 [Homo sapiens]
Length = 479
Score = 364 bits (934), Expect = e-100
Identities = 231/448 (51%), Positives = 283/448 (63%), Gaps = 60/448 (13%)
Query: 1 MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60
MK G+ +Y+P+DP NYN RG Y RY P P ++ V+L+VG +F G+
Sbjct: 73 MKRGEPAIYRPLDPKPFPNYRANYNFRG-MYNQRYHCPVPK---IFYVQLTVGNNEFFGE 128
Query: 61 GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRES----EEENLNKSEISQVFEIALKRN 116
GKTRQAA+H+AA KAL+ LQNEP+PER NG ++++ NKSEIS VFEIALKRN
Sbjct: 129 GKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRN 188
Query: 117 LPVNFESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKK 176
+PV+FE V +ESGPPHMK+FVT+VSVGEF EGEG SKK+SKK AA VL+ELKK
Sbjct: 189 MPVSFE------VIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKK 242
Query: 177 LPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTER 236
LPPLP VE+ K KK+ K IVK PEYGQG+NPISRLAQIQQAKKEKEP+Y LL+ER
Sbjct: 243 LPPLPVVEKPKLFFKKRPKTIVK--AGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSER 300
Query: 237 GLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEK 296
G+PRRREFVMQVKVGN A GTG NKK+AK+NAAE ML LG+K + EK
Sbjct: 301 GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKA-----STNLQDQLEK 355
Query: 297 TPIKKPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAV--- 353
T K G K F EP T+N P GIL + P+V Q +
Sbjct: 356 TGENKGWSGPKPGFPEP-------TNN--------------TPKGILHLSPDVYQEMEAS 394
Query: 354 ------GVSQGH-HTKDFTRAAPN----PAKATVTAMIARELLYGGTSPTAETI-LKNNI 401
G + G+ KD + + + + +A IARELL GTS TAE I LK
Sbjct: 395 RHKVISGTTLGYLSPKDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKG-- 452
Query: 402 SSGHVPHGPLTRPSEQLDYLSRVQGFQV 429
SS P P+ +PS+QL+YL+R+QGFQV
Sbjct: 453 SSPTPPCSPV-QPSKQLEYLARIQGFQV 479
Score = 69.3 bits (168), Expect = 8e-12
Identities = 71/274 (25%), Positives = 120/274 (43%), Gaps = 33/274 (12%)
Query: 45 LYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSE 104
++ V+LS+G Q + +G + + A+ A KA L LP+ V N N
Sbjct: 7 MFSVQLSLGEQTWESEGSSIKKAQQAVANKA---LTESTLPK--PVQKPPKSNVNNNPGS 61
Query: 105 ISQVFE---IALKRNLPVNFESFPLKQVARESGP-------------PHMKNFVTKVSVG 148
I+ E +A+KR P + K P K F +++VG
Sbjct: 62 ITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVG 121
Query: 149 EFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQ 208
GEGK+++ ++ NAA+ L+ L+ P + P+ + K + + + +
Sbjct: 122 NNEFFGEGKTRQAARHNAAMKALQALQNEP----IPERSPQNGESGKDMDDDKDANK--- 174
Query: 209 GINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRN 268
+ IS + +I K+ + ++ E G P + FV +V VG +AEG G +KK++K+
Sbjct: 175 --SEISLVFEI-ALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKR 231
Query: 269 AAENMLEILGFKVPQAQPTKPAL--KSEEKTPIK 300
AA +L+ L P KP L K KT +K
Sbjct: 232 AATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVK 265
>gi|19743838 TAR RNA binding protein 2 isoform b [Homo sapiens]
Length = 345
Score = 77.0 bits (188), Expect = 4e-14
Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 29/192 (15%)
Query: 111 IALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAV 170
I+L + P+ + + G H NF +V+VG+ G+G SKK +K AA
Sbjct: 11 ISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVA 70
Query: 171 LEELK------------------------KLPPLPAVERVKPR---IKKKTKPI-VKPQT 202
L+ LK +P A P + ++ P+ ++P
Sbjct: 71 LKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPV 130
Query: 203 SPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNK 262
SP+ + NP+ L ++ K + PEYT+ E G R+EF M +V G+GT+K
Sbjct: 131 SPQQSE-CNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSK 189
Query: 263 KVAKRNAAENML 274
K+AKRNAA ML
Sbjct: 190 KLAKRNAAAKML 201
Score = 52.0 bits (123), Expect = 1e-06
Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 49/213 (23%)
Query: 4 GKKPMYKPVDPYSRMQSTYNYNM---RGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60
GK P+ + +R+ T Y++ G A+ P + + ++VG G+
Sbjct: 7 GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTF-----------RVTVGDTSCTGQ 55
Query: 61 GKTRQAAKHDAAAKALRILQNEPLPE-RLEVNGRESEEENLNKSEI---------SQVFE 110
G +++AAKH AA AL+ L+ + E LE + S ++ +I + V
Sbjct: 56 GPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPS 115
Query: 111 IALKRNLPVNFES-------------------------FPLKQVARESGPPHMKNFVTKV 145
+ L R+ P+ + P V +ESGP H K F
Sbjct: 116 VVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTC 175
Query: 146 SVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 178
V F+ G G SKK++K+NAA +L + +P
Sbjct: 176 RVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVP 208
Score = 40.0 bits (92), Expect = 0.005
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 209 GINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRN 268
G PIS L Q + K P Y LL G + F +V VG+ + G G +KK AK
Sbjct: 7 GKTPIS-LLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 65
Query: 269 AAENMLEIL 277
AAE L+ L
Sbjct: 66 AAEVALKHL 74
>gi|19743840 TAR RNA binding protein 2 isoform a [Homo sapiens]
Length = 366
Score = 77.0 bits (188), Expect = 4e-14
Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 29/192 (15%)
Query: 111 IALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAV 170
I+L + P+ + + G H NF +V+VG+ G+G SKK +K AA
Sbjct: 32 ISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVA 91
Query: 171 LEELK------------------------KLPPLPAVERVKPR---IKKKTKPI-VKPQT 202
L+ LK +P A P + ++ P+ ++P
Sbjct: 92 LKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPV 151
Query: 203 SPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNK 262
SP+ + NP+ L ++ K + PEYT+ E G R+EF M +V G+GT+K
Sbjct: 152 SPQQSE-CNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSK 210
Query: 263 KVAKRNAAENML 274
K+AKRNAA ML
Sbjct: 211 KLAKRNAAAKML 222
Score = 52.0 bits (123), Expect = 1e-06
Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 49/213 (23%)
Query: 4 GKKPMYKPVDPYSRMQSTYNYNM---RGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60
GK P+ + +R+ T Y++ G A+ P + + ++VG G+
Sbjct: 28 GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTF-----------RVTVGDTSCTGQ 76
Query: 61 GKTRQAAKHDAAAKALRILQNEPLPE-RLEVNGRESEEENLNKSEI---------SQVFE 110
G +++AAKH AA AL+ L+ + E LE + S ++ +I + V
Sbjct: 77 GPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPS 136
Query: 111 IALKRNLPVNFES-------------------------FPLKQVARESGPPHMKNFVTKV 145
+ L R+ P+ + P V +ESGP H K F
Sbjct: 137 VVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTC 196
Query: 146 SVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 178
V F+ G G SKK++K+NAA +L + +P
Sbjct: 197 RVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVP 229
Score = 40.0 bits (92), Expect = 0.005
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 209 GINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRN 268
G PIS L Q + K P Y LL G + F +V VG+ + G G +KK AK
Sbjct: 28 GKTPIS-LLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 86
Query: 269 AAENMLEIL 277
AAE L+ L
Sbjct: 87 AAEVALKHL 95
>gi|85068512 TAR RNA binding protein 2 isoform b [Homo sapiens]
Length = 345
Score = 77.0 bits (188), Expect = 4e-14
Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 29/192 (15%)
Query: 111 IALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAV 170
I+L + P+ + + G H NF +V+VG+ G+G SKK +K AA
Sbjct: 11 ISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVA 70
Query: 171 LEELK------------------------KLPPLPAVERVKPR---IKKKTKPI-VKPQT 202
L+ LK +P A P + ++ P+ ++P
Sbjct: 71 LKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPV 130
Query: 203 SPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNK 262
SP+ + NP+ L ++ K + PEYT+ E G R+EF M +V G+GT+K
Sbjct: 131 SPQQSE-CNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSK 189
Query: 263 KVAKRNAAENML 274
K+AKRNAA ML
Sbjct: 190 KLAKRNAAAKML 201
Score = 52.0 bits (123), Expect = 1e-06
Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 49/213 (23%)
Query: 4 GKKPMYKPVDPYSRMQSTYNYNM---RGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60
GK P+ + +R+ T Y++ G A+ P + + ++VG G+
Sbjct: 7 GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTF-----------RVTVGDTSCTGQ 55
Query: 61 GKTRQAAKHDAAAKALRILQNEPLPE-RLEVNGRESEEENLNKSEI---------SQVFE 110
G +++AAKH AA AL+ L+ + E LE + S ++ +I + V
Sbjct: 56 GPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPS 115
Query: 111 IALKRNLPVNFES-------------------------FPLKQVARESGPPHMKNFVTKV 145
+ L R+ P+ + P V +ESGP H K F
Sbjct: 116 VVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTC 175
Query: 146 SVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 178
V F+ G G SKK++K+NAA +L + +P
Sbjct: 176 RVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVP 208
Score = 40.0 bits (92), Expect = 0.005
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 209 GINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRN 268
G PIS L Q + K P Y LL G + F +V VG+ + G G +KK AK
Sbjct: 7 GKTPIS-LLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 65
Query: 269 AAENMLEIL 277
AAE L+ L
Sbjct: 66 AAEVALKHL 74
>gi|213417919 protein kinase, interferon-inducible double stranded
RNA dependent activator isoform 3 [Homo sapiens]
Length = 288
Score = 68.9 bits (167), Expect = 1e-11
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 122 ESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLP 181
++ P+ + R H+ F +V+VG+ GEG SKK++K AA A + LK
Sbjct: 22 KNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILK------ 75
Query: 182 AVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRR 241
I + P S + +NPI L ++ + PEYTL E G +
Sbjct: 76 ----ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHK 131
Query: 242 REFVMQVKVGNHTAEGTGTNKKVAKRNAAENML 274
RE+ ++ + G G +KK AKRNAAE L
Sbjct: 132 REYTTICRLESFMETGKGASKKQAKRNAAEKFL 164
Score = 53.1 bits (126), Expect = 6e-07
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Query: 41 VPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEP-----LPERLEVNGRES 95
VP ++V +VG G+G +++ AKH AA A+ IL+ +P+ L + +
Sbjct: 38 VPTFTFRV--TVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ 95
Query: 96 EEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGE 155
+ LN I + E+A+ + P +++E GP H + + T + F+ G+
Sbjct: 96 PKNQLNP--IGSLQELAIHHGWRL-----PEYTLSQEGGPAHKREYTTICRLESFMETGK 148
Query: 156 GKSKKISKKNAAIAVLEELKKLPP 179
G SKK +K+NAA L + + P
Sbjct: 149 GASKKQAKRNAAEKFLAKFSNISP 172
Score = 42.7 bits (99), Expect = 8e-04
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 22/249 (8%)
Query: 244 FVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG------FKVPQAQPTKPALKSEEKT 297
F +V VG+ T G GT+KK+AK AAE + IL F VP P P + K
Sbjct: 41 FTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVP--DPLMPDPSKQPKN 98
Query: 298 PIKKPGDGRKVTFF------EPGSGDENGTSNKEDEFRMPYL-SHQQLPAGILPMVPEVA 350
+ G +++ E E G ++K + + L S + G
Sbjct: 99 QLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKG-----ASKK 153
Query: 351 QAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGP 410
QA + F+ +P ++T ++ L S K N+ + P
Sbjct: 154 QAKRNAAEKFLAKFSNISPE-NHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIP 212
Query: 411 LTRPSEQLDYLSRVQGFQVEYKDFPKNNKN-EFVSLINCSSQPPLISHGIGKDVESCHDM 469
T + L +++ QGF + Y D + + N ++ L S+ P + HG G +
Sbjct: 213 NTDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSD 272
Query: 470 AALNILKLL 478
AA N L+ L
Sbjct: 273 AAHNALQYL 281
>gi|213417911 protein kinase, interferon-inducible double stranded
RNA dependent activator isoform 2 [Homo sapiens]
Length = 302
Score = 68.9 bits (167), Expect = 1e-11
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 122 ESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLP 181
++ P+ + R H+ F +V+VG+ GEG SKK++K AA A + LK
Sbjct: 36 KNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILK------ 89
Query: 182 AVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRR 241
I + P S + +NPI L ++ + PEYTL E G +
Sbjct: 90 ----ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHK 145
Query: 242 REFVMQVKVGNHTAEGTGTNKKVAKRNAAENML 274
RE+ ++ + G G +KK AKRNAAE L
Sbjct: 146 REYTTICRLESFMETGKGASKKQAKRNAAEKFL 178
Score = 53.5 bits (127), Expect = 4e-07
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 3 LGKKPMYKPVDPYSRMQSTYNYNMRGGAYP----PRYFYPFPVPPLLYQVELSVGGQQFN 58
LGK KP + +Q + Y M+ P R VP ++V +VG
Sbjct: 12 LGKMITAKPGK--TPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRV--TVGDITCT 67
Query: 59 GKGKTRQAAKHDAAAKALRILQNEP-----LPERLEVNGRESEEENLNKSEISQVFEIAL 113
G+G +++ AKH AA A+ IL+ +P+ L + + + LN I + E+A+
Sbjct: 68 GEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNP--IGSLQELAI 125
Query: 114 KRNLPVNFESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEE 173
+ P +++E GP H + + T + F+ G+G SKK +K+NAA L +
Sbjct: 126 HHGWRL-----PEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAK 180
Query: 174 LKKLPP 179
+ P
Sbjct: 181 FSNISP 186
Score = 42.7 bits (99), Expect = 8e-04
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 22/249 (8%)
Query: 244 FVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG------FKVPQAQPTKPALKSEEKT 297
F +V VG+ T G GT+KK+AK AAE + IL F VP P P + K
Sbjct: 55 FTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVP--DPLMPDPSKQPKN 112
Query: 298 PIKKPGDGRKVTFF------EPGSGDENGTSNKEDEFRMPYL-SHQQLPAGILPMVPEVA 350
+ G +++ E E G ++K + + L S + G
Sbjct: 113 QLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKG-----ASKK 167
Query: 351 QAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGP 410
QA + F+ +P ++T ++ L S K N+ + P
Sbjct: 168 QAKRNAAEKFLAKFSNISPE-NHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIP 226
Query: 411 LTRPSEQLDYLSRVQGFQVEYKDFPKNNKN-EFVSLINCSSQPPLISHGIGKDVESCHDM 469
T + L +++ QGF + Y D + + N ++ L S+ P + HG G +
Sbjct: 227 NTDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSD 286
Query: 470 AALNILKLL 478
AA N L+ L
Sbjct: 287 AAHNALQYL 295
>gi|4505581 protein kinase, interferon-inducible double stranded RNA
dependent activator isoform 1 [Homo sapiens]
Length = 313
Score = 68.9 bits (167), Expect = 1e-11
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 122 ESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLP 181
++ P+ + R H+ F +V+VG+ GEG SKK++K AA A + LK
Sbjct: 47 KNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILK------ 100
Query: 182 AVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRR 241
I + P S + +NPI L ++ + PEYTL E G +
Sbjct: 101 ----ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHK 156
Query: 242 REFVMQVKVGNHTAEGTGTNKKVAKRNAAENML 274
RE+ ++ + G G +KK AKRNAAE L
Sbjct: 157 REYTTICRLESFMETGKGASKKQAKRNAAEKFL 189
Score = 53.5 bits (127), Expect = 4e-07
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 3 LGKKPMYKPVDPYSRMQSTYNYNMRGGAYP----PRYFYPFPVPPLLYQVELSVGGQQFN 58
LGK KP + +Q + Y M+ P R VP ++V +VG
Sbjct: 23 LGKMITAKPGK--TPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRV--TVGDITCT 78
Query: 59 GKGKTRQAAKHDAAAKALRILQNEP-----LPERLEVNGRESEEENLNKSEISQVFEIAL 113
G+G +++ AKH AA A+ IL+ +P+ L + + + LN I + E+A+
Sbjct: 79 GEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNP--IGSLQELAI 136
Query: 114 KRNLPVNFESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEE 173
+ P +++E GP H + + T + F+ G+G SKK +K+NAA L +
Sbjct: 137 HHGWRL-----PEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAK 191
Query: 174 LKKLPP 179
+ P
Sbjct: 192 FSNISP 197
Score = 42.7 bits (99), Expect = 8e-04
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 22/249 (8%)
Query: 244 FVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG------FKVPQAQPTKPALKSEEKT 297
F +V VG+ T G GT+KK+AK AAE + IL F VP P P + K
Sbjct: 66 FTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVP--DPLMPDPSKQPKN 123
Query: 298 PIKKPGDGRKVTFF------EPGSGDENGTSNKEDEFRMPYL-SHQQLPAGILPMVPEVA 350
+ G +++ E E G ++K + + L S + G
Sbjct: 124 QLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKG-----ASKK 178
Query: 351 QAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGP 410
QA + F+ +P ++T ++ L S K N+ + P
Sbjct: 179 QAKRNAAEKFLAKFSNISPE-NHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIP 237
Query: 411 LTRPSEQLDYLSRVQGFQVEYKDFPKNNKN-EFVSLINCSSQPPLISHGIGKDVESCHDM 469
T + L +++ QGF + Y D + + N ++ L S+ P + HG G +
Sbjct: 238 NTDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSD 297
Query: 470 AALNILKLL 478
AA N L+ L
Sbjct: 298 AAHNALQYL 306
>gi|24234756 interleukin enhancer binding factor 3 isoform c [Homo
sapiens]
Length = 690
Score = 57.4 bits (137), Expect = 3e-08
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 128 QVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------- 174
++ ++GP H F V V E G SKK +K + A+ VL+++
Sbjct: 419 KLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSK 478
Query: 175 -----KKLPPLPAVERVKPRIKKKTKPIVK--PQTSPEYG-----QGINPISRLAQIQQA 222
++ PAV P ++ + P + E G G NP+ L +
Sbjct: 479 GEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNE---- 534
Query: 223 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVP 282
K + +Y L++E G + FVM+V+V +G G+NKKVAK AA LE L P
Sbjct: 535 -KRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTP 593
Query: 283 QA 284
A
Sbjct: 594 LA 595
Score = 46.6 bits (109), Expect = 5e-05
Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 39/205 (19%)
Query: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRES 95
PV ++ + + V G F G +++ AK A K +LQ+ LP E G +S
Sbjct: 426 PVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDS 482
Query: 96 EEENLNKSEISQVFEIALKRNLP--------------------------VNFESFPLK-Q 128
EE K + + + P +N + LK +
Sbjct: 483 AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLKYE 542
Query: 129 VARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKP 188
+ E+G H K FV +V V +G G +KK++K AA+A LE+L PL K
Sbjct: 543 LISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANKKK 602
Query: 189 R----IKKKTKPIVKPQTSPEYGQG 209
R ++ K KP +P +G G
Sbjct: 603 RAPVPVRGGPKFAAKPH-NPGFGMG 626
Score = 43.9 bits (102), Expect = 3e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 192 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 251
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
Query: 252 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 295
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
>gi|24234753 interleukin enhancer binding factor 3 isoform b [Homo
sapiens]
Length = 702
Score = 57.4 bits (137), Expect = 3e-08
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 128 QVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------- 174
++ ++GP H F V V E G SKK +K + A+ VL+++
Sbjct: 419 KLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSK 478
Query: 175 -----KKLPPLPAVERVKPRIKKKTKPIVK--PQTSPEYG-----QGINPISRLAQIQQA 222
++ PAV P ++ + P + E G G NP+ L +
Sbjct: 479 GEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNE---- 534
Query: 223 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVP 282
K + +Y L++E G + FVM+V+V +G G+NKKVAK AA LE L P
Sbjct: 535 -KRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTP 593
Query: 283 QA 284
A
Sbjct: 594 LA 595
Score = 46.6 bits (109), Expect = 5e-05
Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 39/205 (19%)
Query: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRES 95
PV ++ + + V G F G +++ AK A K +LQ+ LP E G +S
Sbjct: 426 PVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDS 482
Query: 96 EEENLNKSEISQVFEIALKRNLP--------------------------VNFESFPLK-Q 128
EE K + + + P +N + LK +
Sbjct: 483 AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLKYE 542
Query: 129 VARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKP 188
+ E+G H K FV +V V +G G +KK++K AA+A LE+L PL K
Sbjct: 543 LISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANKKK 602
Query: 189 R----IKKKTKPIVKPQTSPEYGQG 209
R ++ K KP +P +G G
Sbjct: 603 RAPVPVRGGPKFAAKPH-NPGFGMG 626
Score = 43.9 bits (102), Expect = 3e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 192 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 251
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
Query: 252 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 295
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
sapiens]
Length = 894
Score = 57.4 bits (137), Expect = 3e-08
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 128 QVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------- 174
++ ++GP H F V V E G SKK +K + A+ VL+++
Sbjct: 419 KLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSK 478
Query: 175 -----KKLPPLPAVERVKPRIKKKTKPIVK--PQTSPEYG-----QGINPISRLAQIQQA 222
++ PAV P ++ + P + E G G NP+ L +
Sbjct: 479 GEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNE---- 534
Query: 223 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVP 282
K + +Y L++E G + FVM+V+V +G G+NKKVAK AA LE L P
Sbjct: 535 -KRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTP 593
Query: 283 QA 284
A
Sbjct: 594 LA 595
Score = 46.6 bits (109), Expect = 5e-05
Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 39/205 (19%)
Query: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRES 95
PV ++ + + V G F G +++ AK A K +LQ+ LP E G +S
Sbjct: 426 PVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDS 482
Query: 96 EEENLNKSEISQVFEIALKRNLP--------------------------VNFESFPLK-Q 128
EE K + + + P +N + LK +
Sbjct: 483 AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLKYE 542
Query: 129 VARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKP 188
+ E+G H K FV +V V +G G +KK++K AA+A LE+L PL K
Sbjct: 543 LISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANKKK 602
Query: 189 R----IKKKTKPIVKPQTSPEYGQG 209
R ++ K KP +P +G G
Sbjct: 603 RAPVPVRGGPKFAAKPH-NPGFGMG 626
Score = 43.9 bits (102), Expect = 3e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 192 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 251
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
Query: 252 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 295
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
>gi|212549555 interleukin enhancer binding factor 3 isoform e [Homo
sapiens]
Length = 706
Score = 57.0 bits (136), Expect = 4e-08
Identities = 52/186 (27%), Positives = 78/186 (41%), Gaps = 34/186 (18%)
Query: 128 QVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------- 174
++ ++GP H F V V E G SKK +K + A+ VL+++
Sbjct: 419 KLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSK 478
Query: 175 -----KKLPPLPAVERVKPRIKKKTKPI-----------VKPQTSPEYGQGINPISRLAQ 218
++ PAV P ++ + P VK Q G NP+ L +
Sbjct: 479 GEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNE 538
Query: 219 IQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG 278
K + +Y L++E G + FVM+V+V +G G+NKKVAK AA LE L
Sbjct: 539 -----KRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLF 593
Query: 279 FKVPQA 284
P A
Sbjct: 594 PDTPLA 599
Score = 46.2 bits (108), Expect = 7e-05
Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 43/209 (20%)
Query: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRES 95
PV ++ + + V G F G +++ AK A K +LQ+ LP E G +S
Sbjct: 426 PVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDS 482
Query: 96 EEENLNK--------------------------SEISQVFEIALKRN----LPVNFESFP 125
EE K + Q I K + +N +
Sbjct: 483 AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKRRG 542
Query: 126 LK-QVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVE 184
LK ++ E+G H K FV +V V +G G +KK++K AA+A LE+L PL
Sbjct: 543 LKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDA 602
Query: 185 RVKPR----IKKKTKPIVKPQTSPEYGQG 209
K R ++ K KP +P +G G
Sbjct: 603 NKKKRAPVPVRGGPKFAAKPH-NPGFGMG 630
Score = 43.9 bits (102), Expect = 3e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 192 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 251
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
Query: 252 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 295
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
sapiens]
Length = 898
Score = 57.0 bits (136), Expect = 4e-08
Identities = 52/186 (27%), Positives = 78/186 (41%), Gaps = 34/186 (18%)
Query: 128 QVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------- 174
++ ++GP H F V V E G SKK +K + A+ VL+++
Sbjct: 419 KLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSK 478
Query: 175 -----KKLPPLPAVERVKPRIKKKTKPI-----------VKPQTSPEYGQGINPISRLAQ 218
++ PAV P ++ + P VK Q G NP+ L +
Sbjct: 479 GEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNE 538
Query: 219 IQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG 278
K + +Y L++E G + FVM+V+V +G G+NKKVAK AA LE L
Sbjct: 539 -----KRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLF 593
Query: 279 FKVPQA 284
P A
Sbjct: 594 PDTPLA 599
Score = 46.2 bits (108), Expect = 7e-05
Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 43/209 (20%)
Query: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRES 95
PV ++ + + V G F G +++ AK A K +LQ+ LP E G +S
Sbjct: 426 PVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDS 482
Query: 96 EEENLNK--------------------------SEISQVFEIALKRN----LPVNFESFP 125
EE K + Q I K + +N +
Sbjct: 483 AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKRRG 542
Query: 126 LK-QVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVE 184
LK ++ E+G H K FV +V V +G G +KK++K AA+A LE+L PL
Sbjct: 543 LKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDA 602
Query: 185 RVKPR----IKKKTKPIVKPQTSPEYGQG 209
K R ++ K KP +P +G G
Sbjct: 603 NKKKRAPVPVRGGPKFAAKPH-NPGFGMG 630
Score = 43.9 bits (102), Expect = 3e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 192 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 251
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
Query: 252 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 295
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
>gi|237681091 RNA-specific adenosine deaminase B1 isoform 7 [Homo
sapiens]
Length = 674
Score = 56.2 bits (134), Expect = 7e-08
Identities = 73/258 (28%), Positives = 103/258 (39%), Gaps = 50/258 (19%)
Query: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEEN 99
PV L+ + + V GQ F G G T++ AK AA KALR P
Sbjct: 103 PVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFP---------------- 146
Query: 100 LNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKN-FVT--KVSVGEFVGEGEG 156
N SE +A+ R L VN + F Q P + N F T K +VG
Sbjct: 147 -NASEA----HLAMGRTLSVNTD-FTSDQA---DFPDTLFNGFETPDKAEPPFYVGSNGD 197
Query: 157 KSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRL 216
S S + A P+PA + + P++ P P G NP+ L
Sbjct: 198 DSFSSSGDLSLSA--------SPVPA------SLAQPPLPVLPPFPPPS---GKNPVMIL 240
Query: 217 AQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEI 276
+++ K Y L+E G + FVM V V EG+G NKK+AK AA++ L
Sbjct: 241 NELRPGLK-----YDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALAA 295
Query: 277 LGFKVPQAQPTKPALKSE 294
+ P++ + SE
Sbjct: 296 IFNLHLDQTPSRQPIPSE 313
Score = 40.0 bits (92), Expect = 0.005
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 212 PISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAE 271
P + L Q+ + K + YTLL++ G FVM V+V EG+G KK AK +AAE
Sbjct: 79 PKNALMQLNEIKPGLQ--YTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAE 136
Query: 272 NML 274
L
Sbjct: 137 KAL 139
Score = 32.7 bits (73), Expect = 0.79
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 132 ESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 178
++GP H FV V V V EG G +KK +K +AA L + P
Sbjct: 100 QTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFP 146
>gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo
sapiens]
Length = 714
Score = 56.2 bits (134), Expect = 7e-08
Identities = 73/258 (28%), Positives = 103/258 (39%), Gaps = 50/258 (19%)
Query: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEEN 99
PV L+ + + V GQ F G G T++ AK AA KALR P
Sbjct: 103 PVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFP---------------- 146
Query: 100 LNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKN-FVT--KVSVGEFVGEGEG 156
N SE +A+ R L VN + F Q P + N F T K +VG
Sbjct: 147 -NASEA----HLAMGRTLSVNTD-FTSDQA---DFPDTLFNGFETPDKAEPPFYVGSNGD 197
Query: 157 KSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRL 216
S S + A P+PA + + P++ P P G NP+ L
Sbjct: 198 DSFSSSGDLSLSA--------SPVPA------SLAQPPLPVLPPFPPPS---GKNPVMIL 240
Query: 217 AQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEI 276
+++ K Y L+E G + FVM V V EG+G NKK+AK AA++ L
Sbjct: 241 NELRPGLK-----YDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALAA 295
Query: 277 LGFKVPQAQPTKPALKSE 294
+ P++ + SE
Sbjct: 296 IFNLHLDQTPSRQPIPSE 313
Score = 40.0 bits (92), Expect = 0.005
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 212 PISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAE 271
P + L Q+ + K + YTLL++ G FVM V+V EG+G KK AK +AAE
Sbjct: 79 PKNALMQLNEIKPGLQ--YTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAE 136
Query: 272 NML 274
L
Sbjct: 137 KAL 139
Score = 32.7 bits (73), Expect = 0.79
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 132 ESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 178
++GP H FV V V V EG G +KK +K +AA L + P
Sbjct: 100 QTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFP 146
>gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo
sapiens]
Length = 741
Score = 56.2 bits (134), Expect = 7e-08
Identities = 73/258 (28%), Positives = 103/258 (39%), Gaps = 50/258 (19%)
Query: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEEN 99
PV L+ + + V GQ F G G T++ AK AA KALR P
Sbjct: 103 PVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFP---------------- 146
Query: 100 LNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKN-FVT--KVSVGEFVGEGEG 156
N SE +A+ R L VN + F Q P + N F T K +VG
Sbjct: 147 -NASEA----HLAMGRTLSVNTD-FTSDQA---DFPDTLFNGFETPDKAEPPFYVGSNGD 197
Query: 157 KSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRL 216
S S + A P+PA + + P++ P P G NP+ L
Sbjct: 198 DSFSSSGDLSLSA--------SPVPA------SLAQPPLPVLPPFPPPS---GKNPVMIL 240
Query: 217 AQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEI 276
+++ K Y L+E G + FVM V V EG+G NKK+AK AA++ L
Sbjct: 241 NELRPGLK-----YDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALAA 295
Query: 277 LGFKVPQAQPTKPALKSE 294
+ P++ + SE
Sbjct: 296 IFNLHLDQTPSRQPIPSE 313
Score = 40.0 bits (92), Expect = 0.005
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 212 PISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAE 271
P + L Q+ + K + YTLL++ G FVM V+V EG+G KK AK +AAE
Sbjct: 79 PKNALMQLNEIKPGLQ--YTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAE 136
Query: 272 NML 274
L
Sbjct: 137 KAL 139
Score = 32.7 bits (73), Expect = 0.79
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 132 ESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 178
++GP H FV V V V EG G +KK +K +AA L + P
Sbjct: 100 QTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFP 146
>gi|4501919 RNA-specific adenosine deaminase B1 isoform 1 [Homo
sapiens]
Length = 701
Score = 56.2 bits (134), Expect = 7e-08
Identities = 73/258 (28%), Positives = 103/258 (39%), Gaps = 50/258 (19%)
Query: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEEN 99
PV L+ + + V GQ F G G T++ AK AA KALR P
Sbjct: 103 PVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFP---------------- 146
Query: 100 LNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKN-FVT--KVSVGEFVGEGEG 156
N SE +A+ R L VN + F Q P + N F T K +VG
Sbjct: 147 -NASEA----HLAMGRTLSVNTD-FTSDQA---DFPDTLFNGFETPDKAEPPFYVGSNGD 197
Query: 157 KSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRL 216
S S + A P+PA + + P++ P P G NP+ L
Sbjct: 198 DSFSSSGDLSLSA--------SPVPA------SLAQPPLPVLPPFPPPS---GKNPVMIL 240
Query: 217 AQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEI 276
+++ K Y L+E G + FVM V V EG+G NKK+AK AA++ L
Sbjct: 241 NELRPGLK-----YDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALAA 295
Query: 277 LGFKVPQAQPTKPALKSE 294
+ P++ + SE
Sbjct: 296 IFNLHLDQTPSRQPIPSE 313
Score = 40.0 bits (92), Expect = 0.005
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 212 PISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAE 271
P + L Q+ + K + YTLL++ G FVM V+V EG+G KK AK +AAE
Sbjct: 79 PKNALMQLNEIKPGLQ--YTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAE 136
Query: 272 NML 274
L
Sbjct: 137 KAL 139
Score = 32.7 bits (73), Expect = 0.79
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 132 ESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 178
++GP H FV V V V EG G +KK +K +AA L + P
Sbjct: 100 QTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFP 146
>gi|21361745 spermatid perinuclear RNA binding protein [Homo
sapiens]
Length = 672
Score = 55.5 bits (132), Expect = 1e-07
Identities = 66/278 (23%), Positives = 108/278 (38%), Gaps = 57/278 (20%)
Query: 64 RQAAKHDAAAKALRILQNEPLPERL---EVNGRESEEENLNKSEISQVFEIAL------- 113
+ A + A + ++L+ +PLP + + +++E S + + FE L
Sbjct: 311 QHALRLSAFGQIYKVLEMDPLPSSKPFQKYSWSVTDKEGAGSSALKRPFEDGLGDDKDPN 370
Query: 114 ---KRNLPVNFESFPLK-----------------QVARESGPPHMKNFVTKVSVGEFVGE 153
KRNL +S + ++ +SGP H F V V E
Sbjct: 371 KKMKRNLRKILDSKAIDLMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYE 430
Query: 154 GEGKSKKISKKNAAIAVLEEL-------KKLPPLPAVERVKPRIKKKTKPIVKPQTSPEY 206
G SKK +K + A+ VL+ + + + + E+ K +T V +S
Sbjct: 431 ASGPSKKTAKLHVAVKVLQAMGYPTGFDADIECMSSDEKSDNESKNET---VSSNSSNNT 487
Query: 207 GQGINPISRLAQIQQA----------------KKEKEPEYTLLTERGLPRRREFVMQVKV 250
G S +++ +K + +Y L++E G + FVM+V+V
Sbjct: 488 GNSTTETSSTLEVRTQGPILTASGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEV 547
Query: 251 GNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTK 288
G G NKKVAK +AA LE L F P A K
Sbjct: 548 DGQKFRGAGPNKKVAKASAALAALEKL-FSGPNAANNK 584
Score = 45.1 bits (105), Expect = 2e-04
Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEEN 99
PV ++ + + V G + G +++ AK A K L+ + P ++ S+E++
Sbjct: 412 PVHAPVFTMSVDVDGTTYEASGPSKKTAKLHVAVKVLQAM-GYPTGFDADIECMSSDEKS 470
Query: 100 LNKS------------------EISQVFEI--------ALKRN--LPVNFESFPLK-QVA 130
N+S E S E+ A +N + +N + LK ++
Sbjct: 471 DNESKNETVSSNSSNNTGNSTTETSSTLEVRTQGPILTASGKNPVMELNEKRRGLKYELI 530
Query: 131 RESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRI 190
E+G H K FV +V V G G +KK++K +AA+A LE+L P A K +I
Sbjct: 531 SETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAALAALEKLFSGP--NAANNKKKKI 588
Query: 191 KKKTKPIVKPQTS 203
+ K +V S
Sbjct: 589 IPQAKGVVNTAVS 601
>gi|208431829 eukaryotic translation initiation factor 2-alpha
kinase 2 isoform b [Homo sapiens]
Length = 510
Score = 44.3 bits (103), Expect = 3e-04
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 114 KRNLPVNFESFPLKQVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLE 172
K+ + + ++ P SGPPH + F +V + G EGEG+SKK +K AA +E
Sbjct: 20 KQGVVLKYQELP------NSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVE 73
Query: 173 ELKKLPPLPAVERVKPRIKKKTKPIVKPQTSP----EYGQGINPISRLAQIQQAKKEKEP 228
L K KK P++ T+ G I I+R+AQ KK
Sbjct: 74 ILNK-------------EKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQ----KKRLTV 116
Query: 229 EYTLLTERGLPRRREFVMQVKVG-NHTAEGTGTNKKVAKRNAAE 271
Y G+ F + K+G + GTG+ K+ AK+ AA+
Sbjct: 117 NYEQCAS-GVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAK 159
Score = 33.9 bits (76), Expect = 0.35
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 229 EYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQP 286
+Y L G P R F QV + G EG G +KK AK AA+ +EIL + P
Sbjct: 26 KYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSP 84
>gi|208431827 eukaryotic translation initiation factor 2-alpha
kinase 2 isoform a [Homo sapiens]
Length = 551
Score = 44.3 bits (103), Expect = 3e-04
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 114 KRNLPVNFESFPLKQVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLE 172
K+ + + ++ P SGPPH + F +V + G EGEG+SKK +K AA +E
Sbjct: 20 KQGVVLKYQELP------NSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVE 73
Query: 173 ELKKLPPLPAVERVKPRIKKKTKPIVKPQTSP----EYGQGINPISRLAQIQQAKKEKEP 228
L K KK P++ T+ G I I+R+AQ KK
Sbjct: 74 ILNK-------------EKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQ----KKRLTV 116
Query: 229 EYTLLTERGLPRRREFVMQVKVG-NHTAEGTGTNKKVAKRNAAE 271
Y G+ F + K+G + GTG+ K+ AK+ AA+
Sbjct: 117 NYEQCAS-GVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAK 159
Score = 33.9 bits (76), Expect = 0.35
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 229 EYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQP 286
+Y L G P R F QV + G EG G +KK AK AA+ +EIL + P
Sbjct: 26 KYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSP 84
>gi|4506103 eukaryotic translation initiation factor 2-alpha kinase
2 isoform a [Homo sapiens]
Length = 551
Score = 44.3 bits (103), Expect = 3e-04
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 114 KRNLPVNFESFPLKQVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLE 172
K+ + + ++ P SGPPH + F +V + G EGEG+SKK +K AA +E
Sbjct: 20 KQGVVLKYQELP------NSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVE 73
Query: 173 ELKKLPPLPAVERVKPRIKKKTKPIVKPQTSP----EYGQGINPISRLAQIQQAKKEKEP 228
L K KK P++ T+ G I I+R+AQ KK
Sbjct: 74 ILNK-------------EKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQ----KKRLTV 116
Query: 229 EYTLLTERGLPRRREFVMQVKVG-NHTAEGTGTNKKVAKRNAAE 271
Y G+ F + K+G + GTG+ K+ AK+ AA+
Sbjct: 117 NYEQCAS-GVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAK 159
Score = 33.9 bits (76), Expect = 0.35
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 229 EYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQP 286
+Y L G P R F QV + G EG G +KK AK AA+ +EIL + P
Sbjct: 26 KYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSP 84
>gi|8922077 adenosine deaminase, RNA-specific, B2 [Homo sapiens]
Length = 739
Score = 42.4 bits (98), Expect = 0.001
Identities = 49/208 (23%), Positives = 73/208 (35%), Gaps = 58/208 (27%)
Query: 132 ESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP------------- 178
++GP H F V V EG G +KK +K AA L + P
Sbjct: 147 QTGPVHAPVFAVAVEVNGLTFEGTGPTKKKAKMRAAELALRSFVQFPNACQAHLAMGGGP 206
Query: 179 -------------------------PLPAVERVKP-------------RIKKKTKPIVKP 200
P P + +P R+ + +V P
Sbjct: 207 GPGTDFTSDQADFPDTLFQEFEPPAPRPGLAGGRPGDAALLSAAYGRRRLLCRALDLVGP 266
Query: 201 QTSPEYGQGI-NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTG 259
+ G NP+ L +++ + Y L E R R FVM V V T EG+G
Sbjct: 267 TPATPAAPGERNPVVLLNRLRAGLR-----YVCLAEPAERRARSFVMAVSVDGRTFEGSG 321
Query: 260 TNKKVAKRNAAENML-EILGFKVPQAQP 286
+KK+A+ AA+ L E+ ++P P
Sbjct: 322 RSKKLARGQAAQAALQELFDIQMPGHAP 349
Score = 32.3 bits (72), Expect = 1.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 210 INPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNA 269
+ P + L Q+ + + + Y +++ G F + V+V T EGTG KK AK A
Sbjct: 124 VAPKNALVQLHELRPGLQ--YRTVSQTGPVHAPVFAVAVEVNGLTFEGTGPTKKKAKMRA 181
Query: 270 AE 271
AE
Sbjct: 182 AE 183
Score = 29.6 bits (65), Expect = 6.7
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALR 77
PV ++ V + V G F G G T++ AK AA ALR
Sbjct: 150 PVHAPVFAVAVEVNGLTFEGTGPTKKKAKMRAAELALR 187
>gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo
sapiens]
Length = 1181
Score = 39.7 bits (91), Expect = 0.006
Identities = 60/251 (23%), Positives = 104/251 (41%), Gaps = 31/251 (12%)
Query: 46 YQVELSVGGQQFN-GKGKTRQAAKHDAAAKALRILQNEPLPE---RLEVNGRESEEENLN 101
++ ++ + G++F + +++ AK DAA KA+ IL E + + E + S E+
Sbjct: 535 FKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTILLEEAKAKDSGKSEESSHYSTEKESE 594
Query: 102 KSEISQVFEIA----LKRNLPVNF---------ESFPLKQVARESGPPHMKNFVTKVSVG 148
K+ SQ + PV S + +++E GP H F V+VG
Sbjct: 595 KTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKE-GPAHEPKFQYCVAVG 653
Query: 149 -EFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYG 207
+ SKK++K+ AA E +K L +K +V+ +
Sbjct: 654 AQTFPSVSAPSKKVAKQMAAE---EAMKALHGEATNSMASDNQVRKIGELVRYLNT---- 706
Query: 208 QGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGT-GTNKKVAK 266
NP+ L + ++ E+ L+ + G P +FV Q KVG +KK K
Sbjct: 707 ---NPVGGLLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGK 762
Query: 267 RNAAENMLEIL 277
+ AA+ L +L
Sbjct: 763 QEAADAALRVL 773
>gi|70167113 adenosine deaminase, RNA-specific isoform d [Homo
sapiens]
Length = 931
Score = 38.5 bits (88), Expect = 0.014
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 44/267 (16%)
Query: 46 YQVELSVGGQQFN-GKGKTRQAAKHDAAAKALRILQNEPLPE---RLEVNGRESEEENLN 101
++ ++ + G++F + +++ AK DAA KA+ IL E + + E + S E+
Sbjct: 240 FKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTILLEEAKAKDSGKSEESSHYSTEKESE 299
Query: 102 KSEISQVFEIA----LKRNLPVNF---------ESFPLKQVARESGPPHMKNFVTKVSVG 148
K+ SQ + PV S + +++E GP H F V+VG
Sbjct: 300 KTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKE-GPAHEPKFQYCVAVG 358
Query: 149 -EFVGEGEGKSKKISKKNAAIAVLEELKK----------------LPPLPAVERVKPRIK 191
+ SKK++K+ AA ++ L L +E + P
Sbjct: 359 AQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKV 418
Query: 192 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 251
+K +V+ + NP+ L + ++ E+ L+ + G P +FV Q KVG
Sbjct: 419 RKIGELVRYLNT-------NPVGGLLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVG 470
Query: 252 NHTAEGT-GTNKKVAKRNAAENMLEIL 277
+KK K+ AA+ L +L
Sbjct: 471 GRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo
sapiens]
Length = 1200
Score = 38.5 bits (88), Expect = 0.014
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 44/267 (16%)
Query: 46 YQVELSVGGQQFN-GKGKTRQAAKHDAAAKALRILQNEPLPE---RLEVNGRESEEENLN 101
++ ++ + G++F + +++ AK DAA KA+ IL E + + E + S E+
Sbjct: 535 FKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTILLEEAKAKDSGKSEESSHYSTEKESE 594
Query: 102 KSEISQVFEIA----LKRNLPVNF---------ESFPLKQVARESGPPHMKNFVTKVSVG 148
K+ SQ + PV S + +++E GP H F V+VG
Sbjct: 595 KTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKE-GPAHEPKFQYCVAVG 653
Query: 149 -EFVGEGEGKSKKISKKNAAIAVLEELKK----------------LPPLPAVERVKPRIK 191
+ SKK++K+ AA ++ L L +E + P
Sbjct: 654 AQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKV 713
Query: 192 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 251
+K +V+ + NP+ L + ++ E+ L+ + G P +FV Q KVG
Sbjct: 714 RKIGELVRYLNT-------NPVGGLLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVG 765
Query: 252 NHTAEGT-GTNKKVAKRNAAENMLEIL 277
+KK K+ AA+ L +L
Sbjct: 766 GRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo
sapiens]
Length = 1226
Score = 38.5 bits (88), Expect = 0.014
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 44/267 (16%)
Query: 46 YQVELSVGGQQFN-GKGKTRQAAKHDAAAKALRILQNEPLPE---RLEVNGRESEEENLN 101
++ ++ + G++F + +++ AK DAA KA+ IL E + + E + S E+
Sbjct: 535 FKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTILLEEAKAKDSGKSEESSHYSTEKESE 594
Query: 102 KSEISQVFEIA----LKRNLPVNF---------ESFPLKQVARESGPPHMKNFVTKVSVG 148
K+ SQ + PV S + +++E GP H F V+VG
Sbjct: 595 KTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKE-GPAHEPKFQYCVAVG 653
Query: 149 -EFVGEGEGKSKKISKKNAAIAVLEELKK----------------LPPLPAVERVKPRIK 191
+ SKK++K+ AA ++ L L +E + P
Sbjct: 654 AQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKV 713
Query: 192 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 251
+K +V+ + NP+ L + ++ E+ L+ + G P +FV Q KVG
Sbjct: 714 RKIGELVRYLNT-------NPVGGLLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVG 765
Query: 252 NHTAEGT-GTNKKVAKRNAAENMLEIL 277
+KK K+ AA+ L +L
Sbjct: 766 GRWFPAVCAHSKKQGKQEAADAALRVL 792
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.132 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,642,727
Number of Sequences: 37866
Number of extensions: 1067021
Number of successful extensions: 2688
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 2495
Number of HSP's gapped (non-prelim): 202
length of query: 502
length of database: 18,247,518
effective HSP length: 107
effective length of query: 395
effective length of database: 14,195,856
effective search space: 5607363120
effective search space used: 5607363120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.