Search of human proteins with 82546841

Search of human proteins with 82546841

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|82546841 chemokine-like factor superfamily 5 isoform c [Homo
sapiens]
         (125 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|82546841 chemokine-like factor superfamily 5 isoform c [Homo ...   249   5e-67
gi|19923993 chemokine-like factor superfamily 5 isoform a [Homo ...   233   4e-62
gi|115385972 chemokine-like factor superfamily 3 [Homo sapiens]        59   1e-09
gi|32130528 chemokine-like factor superfamily 3 [Homo sapiens]         59   1e-09
gi|32130526 chemokine-like factor superfamily 3 [Homo sapiens]         59   1e-09
gi|21389401 chemokine-like factor superfamily 3 [Homo sapiens]         59   1e-09
gi|4505893 proteolipid protein 2 (colonic epithelium-enriched) [...    54   4e-08
gi|31657099 CKLF-like MARVEL transmembrane domain containing 7 i...    39   8e-04
gi|32130536 CKLF-like MARVEL transmembrane domain containing 8 [...    38   0.002
gi|32307156 chemokine-like factor isoform d [Homo sapiens]             35   0.019
gi|19923929 CKLF-like MARVEL transmembrane domain containing 7 i...    34   0.025
gi|222418629 solute carrier family 38, member 9 [Homo sapiens]         29   0.81 
gi|239741714 PREDICTED: hypothetical protein XP_002342305 [Homo ...    29   1.1  
gi|13162283 mal, T-cell differentiation protein-like [Homo sapiens]    29   1.1  
gi|8923370 CKLF-like MARVEL transmembrane domain containing 6 [H...    28   1.8  
gi|47519562 reticulon 4 isoform E [Homo sapiens]                       28   2.3  
gi|24431935 reticulon 4 isoform A [Homo sapiens]                       28   2.3  
gi|23238240 angiotensin II receptor, type 2 [Homo sapiens]             26   6.8  
gi|93141024 chemokine-like factor isoform e [Homo sapiens]             26   6.8  
gi|8393581 chemokine-like factor isoform a [Homo sapiens]              26   6.8  
gi|66730481 neuregulin 3 [Homo sapiens]                                26   8.9  

>gi|82546841 chemokine-like factor superfamily 5 isoform c [Homo
           sapiens]
          Length = 125

 Score =  249 bits (635), Expect = 5e-67
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM 60
           MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM
Sbjct: 1   MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM 60

Query: 61  AAALLEFFITLAFLFLYATQYYQRFDRINWPCLVFGIILVSIFAYDAFKIYRTEMAPGAS 120
           AAALLEFFITLAFLFLYATQYYQRFDRINWPCLVFGIILVSIFAYDAFKIYRTEMAPGAS
Sbjct: 61  AAALLEFFITLAFLFLYATQYYQRFDRINWPCLVFGIILVSIFAYDAFKIYRTEMAPGAS 120

Query: 121 QGDQQ 125
           QGDQQ
Sbjct: 121 QGDQQ 125


>gi|19923993 chemokine-like factor superfamily 5 isoform a [Homo
           sapiens]
          Length = 156

 Score =  233 bits (593), Expect = 4e-62
 Identities = 125/156 (80%), Positives = 125/156 (80%), Gaps = 31/156 (19%)

Query: 1   MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM 60
           MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM
Sbjct: 1   MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM 60

Query: 61  AAALLEFFITLAFLFLYATQYYQRFDRINWPCL--------------------------- 93
           AAALLEFFITLAFLFLYATQYYQRFDRINWPCL                           
Sbjct: 61  AAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAAVTSRDGAA 120

Query: 94  ----VFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ 125
               VFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ
Sbjct: 121 IAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ 156


>gi|115385972 chemokine-like factor superfamily 3 [Homo sapiens]
          Length = 182

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 17  VAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTAS-ISAYMAAALLEFFITLAFLF 75
           V  L+     +AFL S KG LL  E  L+ I FIC+ AS  SA++ A LLEF + L FLF
Sbjct: 24  VPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYVASSASAFLTAPLLEFLLALYFLF 83

Query: 76  LYATQYYQRFDRINWPCLVFGIILVSIFAYDAFKI 110
             A Q   ++  + WP + F   + +   Y A  I
Sbjct: 84  ADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISI 118


>gi|32130528 chemokine-like factor superfamily 3 [Homo sapiens]
          Length = 182

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 17  VAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTAS-ISAYMAAALLEFFITLAFLF 75
           V  L+     +AFL S KG LL  E  L+ I FIC+ AS  SA++ A LLEF + L FLF
Sbjct: 24  VPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYVASSASAFLTAPLLEFLLALYFLF 83

Query: 76  LYATQYYQRFDRINWPCLVFGIILVSIFAYDAFKI 110
             A Q   ++  + WP + F   + +   Y A  I
Sbjct: 84  ADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISI 118


>gi|32130526 chemokine-like factor superfamily 3 [Homo sapiens]
          Length = 182

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 17  VAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTAS-ISAYMAAALLEFFITLAFLF 75
           V  L+     +AFL S KG LL  E  L+ I FIC+ AS  SA++ A LLEF + L FLF
Sbjct: 24  VPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYVASSASAFLTAPLLEFLLALYFLF 83

Query: 76  LYATQYYQRFDRINWPCLVFGIILVSIFAYDAFKI 110
             A Q   ++  + WP + F   + +   Y A  I
Sbjct: 84  ADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISI 118


>gi|21389401 chemokine-like factor superfamily 3 [Homo sapiens]
          Length = 182

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 17  VAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTAS-ISAYMAAALLEFFITLAFLF 75
           V  L+     +AFL S KG LL  E  L+ I FIC+ AS  SA++ A LLEF + L FLF
Sbjct: 24  VPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYVASSASAFLTAPLLEFLLALYFLF 83

Query: 76  LYATQYYQRFDRINWPCLVFGIILVSIFAYDAFKI 110
             A Q   ++  + WP + F   + +   Y A  I
Sbjct: 84  ADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISI 118


>gi|4505893 proteolipid protein 2 (colonic epithelium-enriched)
           [Homo sapiens]
          Length = 152

 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 26/77 (33%), Positives = 40/77 (51%)

Query: 29  FLTSHKGILLETELALTLIIFICFTASISAYMAAALLEFFITLAFLFLYATQYYQRFDRI 88
           F  + KGILL  E+ L L+I ICF+AS   Y + +++E  +   F  +Y    + +   I
Sbjct: 19  FSRTRKGILLFAEIILCLVILICFSASTPGYSSLSVIEMILAAIFFVVYMCDLHTKIPFI 78

Query: 89  NWPCLVFGIILVSIFAY 105
           NWP   F   L++   Y
Sbjct: 79  NWPWSDFFRTLIAAILY 95


>gi|31657099 CKLF-like MARVEL transmembrane domain containing 7
           isoform b [Homo sapiens]
          Length = 142

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 25  VDKAFLTSHKGILLETELALTLIIFICFTASI-------SAYMAAALLEFFITLAFLFLY 77
           +D ++  +H  +L   ++   LI FIC  +S+       S +    + +  + LAF  ++
Sbjct: 36  LDLSYPRTHAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVH 95

Query: 78  ATQYYQRFDRINWPCLVFGII 98
             ++Y+    I+WP  +FG +
Sbjct: 96  LFRFYRVLTCISWPLSIFGFM 116


>gi|32130536 CKLF-like MARVEL transmembrane domain containing 8
           [Homo sapiens]
          Length = 173

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 23  FAVDKAFLTSHKGILLETELALTLIIFICFTAS----ISAY---MAAALLEFFITLAFLF 75
           FA D+ FL +  G L+  E+ L L+++     +    + A+   M  A+  + +T+ FL 
Sbjct: 30  FAYDREFLRTLPGFLIVAEIVLGLLVWTLIAGTEYFRVPAFGWVMFVAVFYWVLTVFFLI 89

Query: 76  LYATQYYQRFDRINW 90
           +Y T  Y R  ++ W
Sbjct: 90  IYITMTYTRIPQVPW 104


>gi|32307156 chemokine-like factor isoform d [Homo sapiens]
          Length = 120

 Score = 34.7 bits (78), Expect = 0.019
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 27  KAFLTSHKGILLETELALTL--IIFICFTASISAYMAAALLEFFITLAFLFLYATQYYQR 84
           + F  S KG +    LALT+  + F     +   Y+     E  + L F+ LY  +  + 
Sbjct: 11  RPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRL 70

Query: 85  FDRINWPCLVFGIILVSIFAYDAFKIYR 112
              + WP LVF ++       D   IYR
Sbjct: 71  MKWLFWPLLVFALVTAVCCLADGALIYR 98


>gi|19923929 CKLF-like MARVEL transmembrane domain containing 7
           isoform a [Homo sapiens]
          Length = 175

 Score = 34.3 bits (77), Expect = 0.025
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 25  VDKAFLTSHKGILLETELALTLIIFICFTASI-------SAYMAAALLEFFITLAFLFLY 77
           +D ++  +H  +L   ++   LI FIC  +S+       S +    + +  + LAF  ++
Sbjct: 36  LDLSYPRTHAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVH 95

Query: 78  ATQYYQRFDRINWP 91
             ++Y+    I+WP
Sbjct: 96  LFRFYRVLTCISWP 109


>gi|222418629 solute carrier family 38, member 9 [Homo sapiens]
          Length = 561

 Score = 29.3 bits (64), Expect = 0.81
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 12/61 (19%)

Query: 47  IIFICFTASISA---YMAAALLEFFITLAFLFLYATQYY----QRFDRINWPCLVFGIIL 99
           +I  CF  +I     Y  AA       LAF+F+Y +  Y     + +R+ WP L+F + +
Sbjct: 493 VIMACFYPNIGGIIRYSGAAC-----GLAFVFIYPSLIYIISLHQEERLTWPKLIFHVFI 547

Query: 100 V 100
           +
Sbjct: 548 I 548


>gi|239741714 PREDICTED: hypothetical protein XP_002342305 [Homo
           sapiens]
          Length = 231

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 35  GILLETELALTLIIFICFTASISAYMAAALLEFFITLAFLFLYATQYYQRFD 86
           G L+ T +A T I++      +   M  +L  F I+L FL  Y   +Y+RF+
Sbjct: 116 GFLVWTMVAATHIVYPLLQGWV---MYVSLTSFLISLMFLLSYLFGFYKRFE 164


>gi|13162283 mal, T-cell differentiation protein-like [Homo
          sapiens]
          Length = 153

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 35 GILLETELALTLIIFICFTASISAYMAAALLEFFITLAFLFLYATQYYQRFD 86
          G L+ T +A T I++      +   M  +L  F I+L FL  Y   +Y+RF+
Sbjct: 38 GFLVWTMVAATHIVYPLLQGWV---MYVSLTSFLISLMFLLSYLFGFYKRFE 86


>gi|8923370 CKLF-like MARVEL transmembrane domain containing 6
          [Homo sapiens]
          Length = 183

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 36 ILLETELALTLIIFICFTASISAYMAAALL--------EFFITLAFLFLYATQYYQRFD 86
          +L   +L L+L+ FIC        +   L          F ++L  L +Y T +Y+R D
Sbjct: 40 VLKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVD 98


>gi|47519562 reticulon 4 isoform E [Homo sapiens]
          Length = 986

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 3   SARDRRDRHPEEGVVAELQGFAV-DKAFLTSHK--GILLETELALTLIIFICFTASISAY 59
           S  ++ DR P     AEL   +V D  +    K  G++    L L L + +    S++AY
Sbjct: 777 SDTEKEDRSPSAIFSAELSKTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAY 836

Query: 60  MAAALLEFFITLAF 73
           +A ALL   +T++F
Sbjct: 837 IALALLS--VTISF 848


>gi|24431935 reticulon 4 isoform A [Homo sapiens]
          Length = 1192

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 3    SARDRRDRHPEEGVVAELQGFAV-DKAFLTSHK--GILLETELALTLIIFICFTASISAY 59
            S  ++ DR P     AEL   +V D  +    K  G++    L L L + +    S++AY
Sbjct: 983  SDTEKEDRSPSAIFSAELSKTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAY 1042

Query: 60   MAAALLEFFITLAF 73
            +A ALL   +T++F
Sbjct: 1043 IALALLS--VTISF 1054


>gi|23238240 angiotensin II receptor, type 2 [Homo sapiens]
          Length = 363

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 57  SAYMAAALLEFFITLAFLFLYATQYYQRFDRINWP--CLVFGIIL-----VSIFAYDAFK 109
           S Y+    +   + LA L L+AT Y  R+D +  P  C VFG  L      SIF      
Sbjct: 80  SIYIFNLAVADLLLLATLPLWATYYSYRYDWLFGPVMCKVFGSFLTLNMFASIFFITCMS 139

Query: 110 I--YRTEMAPGASQ 121
           +  Y++ + P  SQ
Sbjct: 140 VDRYQSVIYPFLSQ 153


>gi|93141024 chemokine-like factor isoform e [Homo sapiens]
          Length = 113

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 27  KAFLTSHKGILLETELALTL--IIFICFTASISAYMAAALLEFFITLAFLFLYATQYYQR 84
           + F  S KG +    LALT+  + F     +   Y+     E  + L F+ LY  +  + 
Sbjct: 11  RPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRL 70

Query: 85  FDRINWPCL-VFGIILVSIF 103
              + WP L +   ++ ++F
Sbjct: 71  MKWLFWPLLDIINSLVTTVF 90


>gi|8393581 chemokine-like factor isoform a [Homo sapiens]
          Length = 152

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 27  KAFLTSHKGILLETELALTL--IIFICFTASISAYMAAALLEFFITLAFLFLYATQYYQR 84
           + F  S KG +    LALT+  + F     +   Y+     E  + L F+ LY  +  + 
Sbjct: 11  RPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRL 70

Query: 85  FDRINWPCL-VFGIILVSIF 103
              + WP L +   ++ ++F
Sbjct: 71  MKWLFWPLLDIINSLVTTVF 90


>gi|66730481 neuregulin 3 [Homo sapiens]
          Length = 696

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 71  LAFLFLYATQYYQRFDRINWPCLVFGIILVSIF 103
           L   F+ + + YQR   ++  C++FGI++V +F
Sbjct: 346 LGIEFMESEEVYQR-QVLSISCIIFGIVIVGMF 377


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.331    0.142    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,732,919
Number of Sequences: 37866
Number of extensions: 109754
Number of successful extensions: 427
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 23
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.