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Search of human proteins with 7705268
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705268 family with sequence similarity 8, member A1 [Homo
sapiens]
(413 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705268 family with sequence similarity 8, member A1 [Homo sa... 838 0.0
gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens] 49 6e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 48 2e-05
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 47 3e-05
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 47 3e-05
gi|14249622 ajuba isoform 1 [Homo sapiens] 46 5e-05
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 46 7e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 45 9e-05
gi|241982780 programmed cell death 6 interacting protein isoform... 45 1e-04
gi|22027538 programmed cell death 6 interacting protein isoform ... 45 1e-04
gi|239754516 PREDICTED: hypothetical protein [Homo sapiens] 44 4e-04
gi|206597556 kelch domain containing 7B [Homo sapiens] 44 4e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 43 5e-04
gi|116734706 interferon regulatory factor 2 binding protein 2 is... 43 5e-04
gi|116734704 interferon regulatory factor 2 binding protein 2 is... 43 5e-04
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 43 6e-04
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 43 6e-04
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 43 6e-04
gi|210032580 SET domain containing 1B [Homo sapiens] 43 6e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 42 8e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 42 8e-04
gi|61966741 TMF regulated nuclear protein [Homo sapiens] 42 0.001
gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Hom... 42 0.001
gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Hom... 42 0.001
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin... 41 0.002
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 41 0.002
gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 0.003
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 40 0.004
gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo ... 40 0.004
gi|239508758 PREDICTED: hypothetical protein [Homo sapiens] 40 0.004
>gi|7705268 family with sequence similarity 8, member A1 [Homo
sapiens]
Length = 413
Score = 838 bits (2166), Expect = 0.0
Identities = 413/413 (100%), Positives = 413/413 (100%)
Query: 1 MAEGPEEARGHPPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAA 60
MAEGPEEARGHPPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAA
Sbjct: 1 MAEGPEEARGHPPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAA 60
Query: 61 AAAADKLEPPRELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEW 120
AAAADKLEPPRELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEW
Sbjct: 61 AAAADKLEPPRELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEW 120
Query: 121 LWQSYCGYLTWHSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSP 180
LWQSYCGYLTWHSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSP
Sbjct: 121 LWQSYCGYLTWHSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSP 180
Query: 181 GAAGPDPRTAAGISTPAPVAGLGPRAPHVQASVRATPVTRVGSAAPSRSPSETGRQAGRE 240
GAAGPDPRTAAGISTPAPVAGLGPRAPHVQASVRATPVTRVGSAAPSRSPSETGRQAGRE
Sbjct: 181 GAAGPDPRTAAGISTPAPVAGLGPRAPHVQASVRATPVTRVGSAAPSRSPSETGRQAGRE 240
Query: 241 YVIPSLAHRFMAEMVDFFILFFIKATIVLSIMHLSGIKDISKFAMHYIIEEIDEDTSMED 300
YVIPSLAHRFMAEMVDFFILFFIKATIVLSIMHLSGIKDISKFAMHYIIEEIDEDTSMED
Sbjct: 241 YVIPSLAHRFMAEMVDFFILFFIKATIVLSIMHLSGIKDISKFAMHYIIEEIDEDTSMED 300
Query: 301 LQKMMVVALIYRLLVCFYEIICIWGAGGATPGKFLLGLRVVTCDTSVLIAPSRVLVIPSS 360
LQKMMVVALIYRLLVCFYEIICIWGAGGATPGKFLLGLRVVTCDTSVLIAPSRVLVIPSS
Sbjct: 301 LQKMMVVALIYRLLVCFYEIICIWGAGGATPGKFLLGLRVVTCDTSVLIAPSRVLVIPSS 360
Query: 361 NVSITTSTIRALIKNFSIASFFPAFITLLFFQHNRTAYDIVAGTIVVKRNGVR 413
NVSITTSTIRALIKNFSIASFFPAFITLLFFQHNRTAYDIVAGTIVVKRNGVR
Sbjct: 361 NVSITTSTIRALIKNFSIASFFPAFITLLFFQHNRTAYDIVAGTIVVKRNGVR 413
>gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens]
Length = 511
Score = 49.3 bits (116), Expect = 6e-06
Identities = 71/259 (27%), Positives = 93/259 (35%), Gaps = 50/259 (19%)
Query: 10 GHPPGQDDGGGDHEPVP-SLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLE 68
GHP G +P L PPT P + P A+P P G D+ +
Sbjct: 163 GHP-GAAHSRKQRQPARLQLPAPPT---PAKAEGPDADPSLSAAPDDRG-------DEDD 211
Query: 69 PPRELRKRGEAASGSGAELQEQAGCEAPEAAAP----------RERPARLSAREYSRQVH 118
+ GE G G + QA P+ AA E PA +YS
Sbjct: 212 EESDDETDGEDGEGGGPG-EGQAPPSFPDCAAGFLTAAADSACEEPPAPTGLADYSGAGR 270
Query: 119 EWLW----------QSYCGYLTWHSGLAAFPAYCSPQ-PSPQSFPSGGAAVPQAAAPPPP 167
++L SY TWH A P C + P G+ P P PP
Sbjct: 271 DFLRGAGSAEDVFPDSYVS--TWHDEDGAVPEGCPTETPVQPDCILSGSRPPGVKTPGPP 328
Query: 168 QLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVAGLGPRAPHVQASVRATPVTRVG----- 222
+ PF+ +PG P P +G PAP P A + A P T++G
Sbjct: 329 VALF--PFHLGAPGPPAPPPSAPSG-PAPAP-----PPAFYPTLQPEAAPSTQLGEVPAP 380
Query: 223 SAAPSRSPSET-GRQAGRE 240
SAAP+ +PS T R G E
Sbjct: 381 SAAPTTAPSGTPARTPGAE 399
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 47.8 bits (112), Expect = 2e-05
Identities = 57/218 (26%), Positives = 80/218 (36%), Gaps = 27/218 (12%)
Query: 26 PSLRGPPTTAVPCPRDDPQAE--PQAPGRPTAPGLAAAAAADKLEPPRELRKRGEAASGS 83
PS +G P T P P A P G P P A + PP + GS
Sbjct: 971 PSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPP--------SPKGS 1022
Query: 84 GAELQEQAGCEAPEAA---APRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPA 140
A G P AA +P+ PA + + S G S A
Sbjct: 1023 PAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTP 1082
Query: 141 YCSPQPSPQSFPSG----GAAVPQAAAPPPPQLGYYNPFYF---LSPGAAGPDPRTAAGI 193
+ PSP+ P+ GA +P AA PP P+ G P + +P A P P+ G+
Sbjct: 1083 PAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPK--GGL 1140
Query: 194 STPAPVAGLGPRAPHVQASVRATPVTRVGSAAPSRSPS 231
+TP P AP A+ +P + + P +P+
Sbjct: 1141 ATPPPKG-----APTTPAATPPSPKGGLATPPPKGAPT 1173
Score = 43.9 bits (102), Expect = 3e-04
Identities = 61/260 (23%), Positives = 85/260 (32%), Gaps = 68/260 (26%)
Query: 12 PPGQDDGGGDHEPVPSLRGP--PTTAVPCPRD--------DPQAEPQAPGRPTAPGLAAA 61
PP + G P+ +L P P A P + D A +P P+ G
Sbjct: 808 PPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTP 867
Query: 62 AAADKLEPPRELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWL 121
+A L P E + S L E P AP++ PA
Sbjct: 868 SAVTPLSPKGVTLPPKETPTPSVVNLPFPK--EGPATPAPKQAPAL-------------- 911
Query: 122 WQSYCGYLTWHSGLAAFPAYCSPQPSPQSFPSG----GAAVPQAAAPPPPQLGYYNPFYF 177
S ++ P P+P+ P+ GA P AA PP P+ G P
Sbjct: 912 -----------SMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPK 960
Query: 178 LSP------------GAAGPDPRTA------------AGISTPAPVAGLGPRA---PHVQ 210
+P G A P P+ A G +TP+P P A P +
Sbjct: 961 WAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPK 1020
Query: 211 ASVRATPVTRVGSAAPSRSP 230
S ATP + S P+ +P
Sbjct: 1021 GSPAATPFPKGASTPPAATP 1040
Score = 43.5 bits (101), Expect = 4e-04
Identities = 58/230 (25%), Positives = 71/230 (30%), Gaps = 53/230 (23%)
Query: 26 PSLRGPPTT--AVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPPRELRKRGEAASG- 82
PS +G PTT A P A P G PT P + L P A+
Sbjct: 1189 PSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATP 1248
Query: 83 ----SGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAF 138
G G P AA P L+ H G A
Sbjct: 1249 PSPKGGPATPPPKGAPTPPAATPPSLKGGLATPP-------------------HKG-APN 1288
Query: 139 PAYC---SPQPSPQSFPSGGAAVPQAAAPP--------PPQLGYYNPFYFLSPGAAGPDP 187
PA SP+ P + P GA P AA PP PP G P P P P
Sbjct: 1289 PAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTP-----PAVTPPSP 1343
Query: 188 RTAAGISTPAPVAGLGPRAPHVQASVRATPVTRVGSAAPSRSPSETGRQA 237
+ + P + GP TP ++ G P+ +PS G A
Sbjct: 1344 KGTPTLPATTPSSKGGP----------TTPSSKEGPTPPAATPSHKGGPA 1383
Score = 42.0 bits (97), Expect = 0.001
Identities = 60/223 (26%), Positives = 75/223 (33%), Gaps = 40/223 (17%)
Query: 19 GGDHEPVPSLRGPPTT--AVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPPRELRKR 76
GG P P +G PTT A P A P G PT P + L P +
Sbjct: 1138 GGLATPPP--KGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSP---K 1192
Query: 77 GEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHS--G 134
G + + + G P +P+ P +A S + G L S G
Sbjct: 1193 GAPTTPAATPPSPKGGLATP---SPKGAPTTPAATPPSPK----------GGLATPSPKG 1239
Query: 135 LAAFPAYCSPQPS--PQSFPSGGAAVPQAAAPP--------PPQLGYYNPFYFLSPGAAG 184
PA P P P + P GA P AA PP PP G NP P G
Sbjct: 1240 APTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKG 1299
Query: 185 PDPRTAAGISTPAPVAGLGPRAPHVQASVRATPVTRVGSAAPS 227
P T+ P P A P S + +P T AP+
Sbjct: 1300 -GPATSPPKGAPTPPAATPP-------SPKGSPGTPPPKGAPT 1334
Score = 39.3 bits (90), Expect = 0.007
Identities = 58/237 (24%), Positives = 72/237 (30%), Gaps = 75/237 (31%)
Query: 26 PSLRGPPTTAV---PCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPPRELRKRGEA--- 79
PS +G PTT P P+ P A P G PT P + L P A
Sbjct: 1235 PSPKGAPTTPAATPPSPKGGP-ATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVT 1293
Query: 80 --ASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAA 137
+ G G P AA P
Sbjct: 1294 PPSPKGGPATSPPKGAPTPPAATPP----------------------------------- 1318
Query: 138 FPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLS---------------PGA 182
SP+ SP + P GA P A PP P+ P S P A
Sbjct: 1319 -----SPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPA 1373
Query: 183 AGPDPRTAAGISTPAPVAGLG-------PRAPHV----QASVRATPVTRVGSAAPSR 228
A P + ++ P+P G P +P V ATPVTR G+A PS+
Sbjct: 1374 ATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSK 1430
Score = 38.5 bits (88), Expect = 0.011
Identities = 67/273 (24%), Positives = 98/273 (35%), Gaps = 62/273 (22%)
Query: 8 ARGHP--PGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAAD 65
++G P P +G PS +G P P P+ P A P G PT+P A +
Sbjct: 1356 SKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGP-AIPSPKGDPTSP--AVIPLSP 1412
Query: 66 KLEPPRELRKRGEAASGSGAELQEQAGC-----EAPEAAAPRERPARLSAREYSRQVHEW 120
K P + + G AA+ S +L A +AP +AP+ PA S++
Sbjct: 1413 KKAPATPVTREG-AATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSK--------- 1462
Query: 121 LWQSYCGYLTWHSGLAAFPAYCSPQP-------------SPQSFPSG----GAAVPQAAA 163
G PA P P SP+ P+ GA A
Sbjct: 1463 -------------GDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVI 1509
Query: 164 PPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVAGLGPRAPHVQASVR--------- 214
P P+ P P A + +T AP L P A V + +
Sbjct: 1510 PSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKE 1569
Query: 215 --ATPVTRVGSAAPSRSPSE-TGRQAGREYVIP 244
ATP ++ S+ P+ +PS G + +E +IP
Sbjct: 1570 APATPSSKEASSPPAVTPSTYKGAPSPKELLIP 1602
Score = 35.8 bits (81), Expect = 0.073
Identities = 57/229 (24%), Positives = 76/229 (33%), Gaps = 28/229 (12%)
Query: 19 GGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPPRELRKRGE 78
GG P P P A P A P G PT P + L P +G
Sbjct: 1092 GGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATP---PPKGA 1148
Query: 79 AASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAF 138
+ + + G P P+ P +A S + G L S A
Sbjct: 1149 PTTPAATPPSPKGGLATP---PPKGAPTTPAATPPSPK----------GGLATPSPKGAP 1195
Query: 139 PAYCSPQPSPQ---SFPS-GGAAVPQAAAPPPPQLGYYNPF---YFLSPGAAGPDPRTAA 191
+ PSP+ + PS GA AA PP P+ G P +P A P P+
Sbjct: 1196 TTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPK--G 1253
Query: 192 GISTPAPVAGLGPRA---PHVQASVRATPVTRVGSAAPSRSPSETGRQA 237
G +TP P P A P ++ + P + A PS G A
Sbjct: 1254 GPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPA 1302
Score = 28.9 bits (63), Expect = 8.9
Identities = 53/237 (22%), Positives = 72/237 (30%), Gaps = 36/237 (15%)
Query: 12 PPGQDDGGGDHEPVPSLRGPPTT----AVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKL 67
PP P P PP+ A P P+ P + P P + A+ K+
Sbjct: 1602 PPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKM 1661
Query: 68 EPPRELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCG 127
+G A L+E APE+ P R +
Sbjct: 1662 GATVPQASKGLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQT--------------- 1706
Query: 128 YLTWHSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPG------ 181
A P C P PS ++ G+ P + P P L + G
Sbjct: 1707 ----KKSSATSPPIC-PDPSAKN----GSKGPLSTVAPAPLLPVQKDSSKTAKGKDASHS 1757
Query: 182 AAGPDPRTAAGISTPAPVAGLGPRAPHVQ-ASVRATPVTRVG-SAAPSRSPSETGRQ 236
GP + STP A P + ASV A P V APS P+ +Q
Sbjct: 1758 PKGPLAPPESKASTPLTAAAFEKVLPKPESASVSAAPSPPVSLPLAPSPVPTLPPKQ 1814
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 47.0 bits (110), Expect = 3e-05
Identities = 56/234 (23%), Positives = 70/234 (29%), Gaps = 44/234 (18%)
Query: 11 HPPGQDDGGGDHEPVPSLRGPPTTAVPCPRD--DPQAEPQAPGRPTAPGLAAAAAADKLE 68
H P + D P P AVP P + P A P PT+P A +
Sbjct: 982 HAPEEPDTAAVRVSTPEEPASPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPPPEEPTS 1041
Query: 69 PPRELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGY 128
P + E S + A + A E P
Sbjct: 1042 PAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTS--------------------- 1080
Query: 129 LTWHSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPR 188
PA P P + P+ AAVP P P P SP AA P P
Sbjct: 1081 ----------PAAAVPTPEEPTSPA--AAVPTPEEPTSPAAAVPTPEEPASPAAAVPTPE 1128
Query: 189 ----TAAGISTPAPVAGLGPRAPHVQASVRA-----TPVTRVGSAAPSRSPSET 233
AA + TP A P P + S A TP AA +P+E+
Sbjct: 1129 EPASPAAAVPTPEEPAFPAPAVPTPEESASAAVAVPTPEESASPAAAVPTPAES 1182
Score = 42.0 bits (97), Expect = 0.001
Identities = 63/244 (25%), Positives = 80/244 (32%), Gaps = 28/244 (11%)
Query: 3 EGPEEARGHPPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAA 62
E P P ++ VP+ + AV P + A P A A + AA
Sbjct: 1128 EEPASPAAAVPTPEEPAFPAPAVPTPEESASAAVAVPTPEESASPAAAVPTPAESASFAA 1187
Query: 63 AADKLEPPRELRKRGEAASGSGAELQEQAGCEAPEAAAPR-ERPARLSAREYSRQVHEWL 121
LE P + A L+E +P A+ P E PA L+A + +
Sbjct: 1188 VVATLEEPTSPAASVPTPAAMVATLEEFT---SPAASVPTSEEPASLAAAVSNPEEPT-- 1242
Query: 122 WQSYCGYLTWHSGLAAFPAYCSPQPS------PQSFPSGGAAVPQAAAPPPPQLGYYNPF 175
S AA P P S P+ S A+VP P P N
Sbjct: 1243 -----------SPAAAVPTLEEPTSSAAAVLTPEELSSPAASVPTPEEPASPAAAVSNLE 1291
Query: 176 YFLSPGAAGPDPRTAA--GISTPAPVAGLGPRA---PHVQASVRATPVTRVGSAAPSRSP 230
SP AA P P AA S P P P A P + S P V + S
Sbjct: 1292 EPASPAAAVPTPEVAAIPAASVPTPEVPAIPAAAVPPMEEVSPIGVPFLGVSAHTDSVPI 1351
Query: 231 SETG 234
SE G
Sbjct: 1352 SEEG 1355
Score = 36.6 bits (83), Expect = 0.043
Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 146 PSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPR----TAAGISTP----A 197
P+P+ S AAVP P P P SP AA P P AA + TP +
Sbjct: 1021 PTPEEPTSPAAAVPPPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTS 1080
Query: 198 PVAGL-GPRAPHVQASVRATPVTRVGSAAPSRSPSETGRQA 237
P A + P P A+ TP AA +P E A
Sbjct: 1081 PAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPASPA 1121
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 47.0 bits (110), Expect = 3e-05
Identities = 31/90 (34%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 144 PQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVAGLG 203
P P P P G PQ PPPP PF PG GP A P P G
Sbjct: 297 PPPVPGYGPPPGPPPPQQGPPPPP-----GPFPPRPPGPLGPPLTLAPPPHLPGPPPGAP 351
Query: 204 PRAPHVQASVRATPVTRVGSAAPSRSPSET 233
P APHV + P + SR P T
Sbjct: 352 PPAPHVNPAFFPPPTNSGMPTSDSRGPPPT 381
Score = 31.6 bits (70), Expect = 1.4
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 15/64 (23%)
Query: 138 FPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPA 197
FP P P FP+G PP P LG P PG GP P G P
Sbjct: 217 FPGPAGPGGPPPPFPAG-------QTPPRPPLGPPGP-----PGPPGPPP---PGQVLPP 261
Query: 198 PVAG 201
P+AG
Sbjct: 262 PLAG 265
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 46.2 bits (108), Expect = 5e-05
Identities = 63/271 (23%), Positives = 91/271 (33%), Gaps = 47/271 (17%)
Query: 4 GPEEARGHP------PGQDDGGGDHE-------PVPSLRG------PPTTAVPCPRDDP- 43
GP A G P P ++ G D E P G PPT A+P P+ P
Sbjct: 48 GPRGATGGPGDEPLEPAREQGSLDAERNQRGSFEAPRYEGSFPAGPPPTRALPLPQSLPP 107
Query: 44 --QAEPQAPGRPTAPGLAAAAAADKLEPPRELRKRGEAASGSGAELQEQAGCEAPEAAAP 101
+ EP AP A+++A+D +P +S G+ L + AG + P
Sbjct: 108 DFRLEPTAPALSPRSSFASSSASDASKP----------SSPRGSLLLDGAGAGGAGGSRP 157
Query: 102 RERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAYCSPQPSPQSFPSGGAAVPQA 161
+ Y ++ L C + LA PA SP P ++P AA+ +
Sbjct: 158 CSNRTSGISMGYDQRHGSPLPAGPC---LFGPPLAGAPAGYSPGGVPSAYPELHAALDRL 214
Query: 162 AAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPAP------------VAGLGPRAPHV 209
A P G + P P AG+ P V G G A
Sbjct: 215 YAQRPAGFGCQESRHSYPPALGSPGALAGAGVGAAGPLERRGAQPGRHSVTGYGDCAVGA 274
Query: 210 QASVRATPVTRVGSAAPSRSPSETGRQAGRE 240
+ T + R+ R G +G E
Sbjct: 275 RYQDELTALLRLTVGTGGREAGARGEPSGIE 305
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 45.8 bits (107), Expect = 7e-05
Identities = 69/257 (26%), Positives = 87/257 (33%), Gaps = 60/257 (23%)
Query: 18 GGGDHEPVPSLRGPPTTAVPCP-RDDPQAE--PQAPGRPTAPGLAAAAAADKLEPPRELR 74
GGG P T + P R P A P+AP P+ P A L PP+
Sbjct: 231 GGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQA---LRPPQVTP 287
Query: 75 KRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSG 134
R +AA G +P AA + P L A +S + C T
Sbjct: 288 PRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSL-------TCQLAT---P 337
Query: 135 LAAFPAYCSPQPSPQSFPSGGAAVPQAA------------------------APPPPQLG 170
L P S PS Q+ PS A P A A PPPQ
Sbjct: 338 LPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQA- 396
Query: 171 YYNPFYFLSPGAAGPDPRTAAGIS---TPAPVAGLG------------PRAPHVQA--SV 213
P L P A P P + +S TP+P A P +P VQA S
Sbjct: 397 --PPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSP 454
Query: 214 RATPVTRVGSAAPSRSP 230
A+P + PS++P
Sbjct: 455 PASPPVSPSATPPSQAP 471
Score = 40.4 bits (93), Expect = 0.003
Identities = 53/202 (26%), Positives = 69/202 (34%), Gaps = 26/202 (12%)
Query: 34 TAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPPRELRKRGEAASGSGAELQEQAGC 93
T V PR P A P+ P +++A+ EP R+R A G LQ A
Sbjct: 185 TEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGG----LQRPASR 240
Query: 94 EAPEAAAPRERPARL--SAREYSR------QVHEWLWQSYCGYLTWHSGLAAFPAYCSPQ 145
+A P PAR SAR R Q Q+ A PA
Sbjct: 241 SLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLS 300
Query: 146 PSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVAGLGPR 205
SP + PS AA+ A P P A ++TP P+A P
Sbjct: 301 SSPLATPSPSAALQSQAPPTLP--------------ATPHSSSLTCQLATPLPLAPPSPS 346
Query: 206 APHVQASVRATPVTRVGSAAPS 227
AP ++ + P T A S
Sbjct: 347 APPSLQTLPSPPATPPSQATTS 368
Score = 40.0 bits (92), Expect = 0.004
Identities = 58/231 (25%), Positives = 69/231 (29%), Gaps = 57/231 (24%)
Query: 3 EGPEEARGHPPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAA 62
+ P PP + PSL PP P P P P A P AP AA
Sbjct: 449 QAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAA- 507
Query: 63 AADKLEPPRELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLW 122
PP +L K A + A QA +P A+ P + P
Sbjct: 508 ------PPLQLAKPPPQAPPALATPPLQA-LPSPPASFPGQAP----------------- 543
Query: 123 QSYCGYLTWHSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGA 182
S A+ P P PQ+ P A + Q PP P P
Sbjct: 544 ---------FSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAP---RRPPT 591
Query: 183 AGPDPRTAAGISTPAPVAGLGPRAPHVQASVRATPVTRVGSAAPSRSPSET 233
GPD +S P L P P PSRSPS T
Sbjct: 592 PGPD----TSVSGPRLTLALAPGPP----------------PPPSRSPSST 622
Score = 37.7 bits (86), Expect = 0.019
Identities = 63/253 (24%), Positives = 80/253 (31%), Gaps = 73/253 (28%)
Query: 1 MAEGPEEARGHPPGQDDGGGDHEPVPSL----------RGPPTTAVPCPR--DDPQAEP- 47
+A P +A PP G P SL + PP A P + P A P
Sbjct: 523 LATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPT 582
Query: 48 -QAPGRPTAPGLAAAAAADKLE-------PPRELRKRGEAASGSGAELQEQAGCEAPE-- 97
QAP RP PG + + +L PP R SG + PE
Sbjct: 583 LQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEEL 642
Query: 98 ----------AAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSG----LAAFPAYCS 143
AAA A L+A C W G LA A +
Sbjct: 643 RGYDSGPEGGAAASPPPDAELAA---------------CHPAAWSRGPAPPLAFRGAPGA 687
Query: 144 PQPSPQSFPSGGA---------AVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGIS 194
P P P + G A P++A P P G +P GP P T+ G +
Sbjct: 688 PLPWPPATGPGSADGLCTIYETEGPESATPAP---GALDP---------GPSPGTSGGKA 735
Query: 195 TPAPVAGLGPRAP 207
AG R+P
Sbjct: 736 AAGAGAGASSRSP 748
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 45.4 bits (106), Expect = 9e-05
Identities = 58/217 (26%), Positives = 76/217 (35%), Gaps = 53/217 (24%)
Query: 34 TAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPPRELRKRGEAASGSGAELQEQAGC 93
T V PR P A P+ P +++A+ EP R+R A G LQ A
Sbjct: 185 TEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGG----LQRPASR 240
Query: 94 EAPEAAAPRERPARL--SAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAYCSPQPSPQSF 151
+A P PAR SAR G PA+ S QP P+
Sbjct: 241 SLSSSATPLSSPARSGPSAR----------------------GTPRAPAHPS-QPKPKGL 277
Query: 152 PSGGAAVPQAAAPP----PPQLGYYNPFYFLSPGAAG------PDPRTAA---------- 191
A P PP P LG + +P +G P P AA
Sbjct: 278 Q---ALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATPLPATLPPS 334
Query: 192 -GISTPAPVAGLGPRAPHVQASVRATPVTRVGSAAPS 227
++TP P+A P AP ++ + P T A PS
Sbjct: 335 PPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPS 371
Score = 40.8 bits (94), Expect = 0.002
Identities = 57/238 (23%), Positives = 71/238 (29%), Gaps = 27/238 (11%)
Query: 3 EGPEEARGHPPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAA 62
+ P PP + PSL PP P P P P A P AP
Sbjct: 674 QAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAP---PPL 730
Query: 63 AADKLEPPRELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLW 122
AA L+ P + + + AP P PA L ++ +
Sbjct: 731 AAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQ--- 787
Query: 123 QSYCGYLTWHSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAP------PPPQLGYYNPFY 176
LA P P P P SFP P A+ P PPPQ
Sbjct: 788 --------APPALATPPLQALPSP-PASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAP 838
Query: 177 FLS-PGAAGPDPRTAAGISTPAPVAGLGPRAPHVQASVRATPVTRVGSAAPSRSPSET 233
L P + P A P P P + ++ P PSRSPS T
Sbjct: 839 LLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGP-----PPPPSRSPSST 891
Score = 37.7 bits (86), Expect = 0.019
Identities = 63/253 (24%), Positives = 80/253 (31%), Gaps = 73/253 (28%)
Query: 1 MAEGPEEARGHPPGQDDGGGDHEPVPSL----------RGPPTTAVPCPR--DDPQAEP- 47
+A P +A PP G P SL + PP A P + P A P
Sbjct: 792 LATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPT 851
Query: 48 -QAPGRPTAPGLAAAAAADKLE-------PPRELRKRGEAASGSGAELQEQAGCEAPE-- 97
QAP RP PG + + +L PP R SG + PE
Sbjct: 852 LQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEEL 911
Query: 98 ----------AAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSG----LAAFPAYCS 143
AAA A L+A C W G LA A +
Sbjct: 912 RGYDSGPEGGAAASPPPDAELAA---------------CHPAAWSRGPAPPLAFRGAPGA 956
Query: 144 PQPSPQSFPSGGA---------AVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGIS 194
P P P + G A P++A P P G +P GP P T+ G +
Sbjct: 957 PLPWPPATGPGSADGLCTIYETEGPESATPAP---GALDP---------GPSPGTSGGKA 1004
Query: 195 TPAPVAGLGPRAP 207
AG R+P
Sbjct: 1005 AAGAGAGASSRSP 1017
Score = 34.7 bits (78), Expect = 0.16
Identities = 60/216 (27%), Positives = 76/216 (35%), Gaps = 37/216 (17%)
Query: 26 PSLRGPPTTAVPCPRDDPQA--EPQAPGRPTAPGLAAAAAADKLEPPRELRKRGEAASGS 83
P+L PP +P P P A PQAP P L A + P L A +
Sbjct: 596 PALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNA 655
Query: 84 GAELQEQAGCEAPEA-------AAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLA 136
A QA P + + P P SA S+ LA
Sbjct: 656 LAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQA---------------PPSLA 700
Query: 137 AFPAYCSPQPSPQSFPSGGAAVPQAAAPPP---PQLGYYNPFYFLSP---GAAGPDPRTA 190
A P P P P S P +A P APPP P L P SP +A P PR
Sbjct: 701 APPLQVPPSP-PASPPMSPSATPPPQAPPPLAAPPL-QVPPSPPASPPMSPSATPPPRVP 758
Query: 191 AGISTPAPVAGLGPRAPHVQASVRATPVTRVGSAAP 226
++ AP + P P AS+ +P+ + AP
Sbjct: 759 PLLA--APPLQVPPSPP---ASLPMSPLAKPPPQAP 789
Score = 33.1 bits (74), Expect = 0.47
Identities = 49/212 (23%), Positives = 68/212 (32%), Gaps = 28/212 (13%)
Query: 18 GGGDHEPVPSLRGPPTTAVPCP-RDDPQAE--PQAPGRPTAPGLAAAAAADKLEPPRELR 74
GGG P T + P R P A P+AP P+ P A L PP+
Sbjct: 231 GGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQA---LRPPQVTP 287
Query: 75 KRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSG 134
R +AA G +P R P +A +
Sbjct: 288 PRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAAT-----------------PLPAT 330
Query: 135 LAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGIS 194
L P +P P PS ++ +PP P P A P +T I
Sbjct: 331 LPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQ 390
Query: 195 TPAPVAG---LGPRAPHVQASVRATPVTRVGS 223
P + P +P +S++AT T +GS
Sbjct: 391 VPHSLTSPSLQAPPSPLALSSLQAT--TSLGS 420
Score = 30.0 bits (66), Expect = 4.0
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 139 PAYCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPAP 198
PA C Q P + P + A PPPQ P SP G + ++TP P
Sbjct: 564 PAPCPLQAPPSPLTTPPPETPSSIATPPPQA----PPALASPPLQGLPSPPLSPLATPPP 619
Query: 199 VAGLGPRAPHVQA 211
A P +QA
Sbjct: 620 QAPPXLALPPLQA 632
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 45.1 bits (105), Expect = 1e-04
Identities = 45/161 (27%), Positives = 52/161 (32%), Gaps = 20/161 (12%)
Query: 12 PPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPPR 71
P Q G H P P PT P PR P +PQ P RP P L A A P
Sbjct: 730 PAYQSSPAGGHAPTP-----PT---PAPRTMPPTKPQPPARPPPPVLPANRAPSATAP-- 779
Query: 72 ELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTW 131
+G+ A Q AP A + P + Y + Y Y
Sbjct: 780 -----SPVGAGTAAPAPSQTPGSAPPPQA--QGPPYPTYPGYPGYCQMPMPMGYNPYAYG 832
Query: 132 HSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYY 172
+ P Y SP P G P P PPQ YY
Sbjct: 833 QYNMPYPPVY---HQSPGQAPYPGPQQPSYPFPQPPQQSYY 870
>gi|22027538 programmed cell death 6 interacting protein isoform 1
[Homo sapiens]
Length = 868
Score = 45.1 bits (105), Expect = 1e-04
Identities = 45/161 (27%), Positives = 52/161 (32%), Gaps = 20/161 (12%)
Query: 12 PPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPPR 71
P Q G H P P PT P PR P +PQ P RP P L A A P
Sbjct: 725 PAYQSSPAGGHAPTP-----PT---PAPRTMPPTKPQPPARPPPPVLPANRAPSATAP-- 774
Query: 72 ELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTW 131
+G+ A Q AP A + P + Y + Y Y
Sbjct: 775 -----SPVGAGTAAPAPSQTPGSAPPPQA--QGPPYPTYPGYPGYCQMPMPMGYNPYAYG 827
Query: 132 HSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYY 172
+ P Y SP P G P P PPQ YY
Sbjct: 828 QYNMPYPPVY---HQSPGQAPYPGPQQPSYPFPQPPQQSYY 865
>gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 334
Score = 43.5 bits (101), Expect = 4e-04
Identities = 59/217 (27%), Positives = 77/217 (35%), Gaps = 40/217 (18%)
Query: 28 LRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADK---LEPPRELRKRGEAASGS- 83
L G T V C + + GR APG A +K PR RG G
Sbjct: 14 LCGSDTAGVTCRVSSQDGDRRGLGREAAPGAPAEGEKEKGKNSRRPRPTCSRGRTERGRV 73
Query: 84 --GAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAY 141
GA+ QE+ A AP RP +A VH L A
Sbjct: 74 ERGADHQERP------AGAPAHRPVPAAAAILRAAVHRVL--------------RVLRAA 113
Query: 142 CSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVAG 201
+ + + + G P+ APP QL G G +AG P G
Sbjct: 114 AAVRDAERGLRREG---PRRHAPPRKQLR----------GRRGAAGLVSAGHLGREPPRG 160
Query: 202 LGPRAPHVQASVRATPVTRVGSAAPS-RSPSETGRQA 237
GPR P + ATP+ G + PS R+ + +GRQA
Sbjct: 161 GGPRPPALVPVPLATPLLLEGRSEPSTRACAVSGRQA 197
>gi|206597556 kelch domain containing 7B [Homo sapiens]
Length = 594
Score = 43.5 bits (101), Expect = 4e-04
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 4 GPEEARGHPP---GQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTA---PG 57
G EA G P + +G +P P LRG T A P+ P +P A PG
Sbjct: 55 GLVEAGGQPQPRSSETNGSPSPDPPPGLRGEGTREKSLDPLPQAAMPRGPAQPPAQRPPG 114
Query: 58 LAAAAAADKLEPPRELRKRG--EAASGSGAELQEQAGCEAPEAAAPRE 103
AA+++A + +P +LRKR E A S E++ A + P+ AP E
Sbjct: 115 PAASSSARRSQPVPQLRKRSRCEIAPSSEQEVRPAASGD-PQGEAPGE 161
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 43.1 bits (100), Expect = 5e-04
Identities = 62/239 (25%), Positives = 80/239 (33%), Gaps = 39/239 (16%)
Query: 4 GPEEARGHP--PG-QDDGGGDHEPVP-SLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLA 59
GP+ G P PG + D G EP P ++GPP A + + EP G P PG
Sbjct: 428 GPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPG-- 485
Query: 60 AAAAADKLEPPRELRKRGEAASGSGAELQEQAGCEAP--EAAAPRERPARLSAREYSRQV 117
+RG S AG + P E +P + S E R
Sbjct: 486 ---------------ERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPG 530
Query: 118 HEWLWQSYCGYLTWHSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQ--LGYYNPF 175
L + GL P SP P ++ P G A PP P G
Sbjct: 531 EAGLPGA--------KGLTGSPG--SPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVM 580
Query: 176 YFLSPGAAGPDPRTAAGISTPAPVAGLGPRAPHVQASVRATPVTRVGSAAPSRSPSETG 234
F P A +P A P P +GP +A + P G A P+ E G
Sbjct: 581 GFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPP----GPAGPAGERGEQG 635
Score = 36.2 bits (82), Expect = 0.056
Identities = 56/242 (23%), Positives = 69/242 (28%), Gaps = 30/242 (12%)
Query: 4 GPEEARGHPPGQD--DGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAA 61
GP G PPG+ +G E P G P P P APG P APG
Sbjct: 1001 GPPGLAG-PPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPG---- 1055
Query: 62 AAADKLEPPRELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWL 121
+ P + RGE A G P + + R +
Sbjct: 1056 ----PVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGI---- 1107
Query: 122 WQSYCGYLTWHSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLS-P 180
H G + P SP GA+ P PP G P
Sbjct: 1108 --------KGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLP 1159
Query: 181 GAAG-PDPRTAAGISTPAPVAGLGPRAPHVQASVRATPVTRVGSAAPSRSPSETGRQAGR 239
G G P PR G + P +GP P P + + P E GR
Sbjct: 1160 GPIGPPGPRGRTGDAGP-----VGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGGR 1214
Query: 240 EY 241
Y
Sbjct: 1215 YY 1216
Score = 31.6 bits (70), Expect = 1.4
Identities = 65/248 (26%), Positives = 77/248 (31%), Gaps = 57/248 (22%)
Query: 12 PPGQDDGGGDH-EPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPP 70
PPG GD E PS PT A P D + PG P G A AD P
Sbjct: 771 PPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGE-----PGPPGPAGFAGPPGAD--GQP 823
Query: 71 RELRKRGEAASGSGAELQEQAGCEAP-----EAAAPRERPARLSAREYSRQVHEWLWQSY 125
+ G+A + A AG P AP + AR SA
Sbjct: 824 GAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGP------------- 870
Query: 126 CGYLTWHSGLAAFPAYCS----PQPSPQSFPSG--------GAAVPQAAAPPPPQLGYYN 173
G FP P PS + P G G P+ P + G
Sbjct: 871 -------PGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVG 923
Query: 174 PFYFLSPGAAGP-DPRTAAGISTPAPVAGL-GPRAPHVQASVRATPVTR-----VGSAAP 226
P PG GP + + G PA G GP+ Q V P R G P
Sbjct: 924 P-----PGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGP 978
Query: 227 SRSPSETG 234
S P + G
Sbjct: 979 SGEPGKQG 986
>gi|116734706 interferon regulatory factor 2 binding protein 2
isoform B [Homo sapiens]
Length = 571
Score = 43.1 bits (100), Expect = 5e-04
Identities = 56/195 (28%), Positives = 78/195 (40%), Gaps = 48/195 (24%)
Query: 50 PGRPTAPGLAAAAAADKLEPP----RELRKRGEAASGSGAELQEQAGCEAPEA------A 99
P + PG AA+AAA +PP +++ + + G G +A AP+A A
Sbjct: 67 PEGRSPPGAAASAAA---KPPPLSAKDILLQQQQQLGHGGP---EAAPRAPQALERYPLA 120
Query: 100 APRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAYCSPQPSPQSFPSGGAAVP 159
A ERP RL + G + A + P+PQ P G VP
Sbjct: 121 AAAERPPRLGS---------------------DFGSSRPAASLAQPPTPQPPPVNGILVP 159
Query: 160 QAAAP--PPPQLGYYNPFYFLSPGAAGPDPRTAA----GISTPAPVA-GLGPRAPHVQAS 212
+ PP+L +P +P P T G +TP P A GLG RA A+
Sbjct: 160 NGFSKLEEPPELNRQSP----NPRRGHAVPPTLVPLMNGSATPLPTALGLGGRAAASLAA 215
Query: 213 VRATPVTRVGSAAPS 227
V T +GSA P+
Sbjct: 216 VSGTAAASLGSAQPT 230
>gi|116734704 interferon regulatory factor 2 binding protein 2
isoform A [Homo sapiens]
Length = 587
Score = 43.1 bits (100), Expect = 5e-04
Identities = 56/195 (28%), Positives = 78/195 (40%), Gaps = 48/195 (24%)
Query: 50 PGRPTAPGLAAAAAADKLEPP----RELRKRGEAASGSGAELQEQAGCEAPEA------A 99
P + PG AA+AAA +PP +++ + + G G +A AP+A A
Sbjct: 67 PEGRSPPGAAASAAA---KPPPLSAKDILLQQQQQLGHGGP---EAAPRAPQALERYPLA 120
Query: 100 APRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAYCSPQPSPQSFPSGGAAVP 159
A ERP RL + G + A + P+PQ P G VP
Sbjct: 121 AAAERPPRLGS---------------------DFGSSRPAASLAQPPTPQPPPVNGILVP 159
Query: 160 QAAAP--PPPQLGYYNPFYFLSPGAAGPDPRTAA----GISTPAPVA-GLGPRAPHVQAS 212
+ PP+L +P +P P T G +TP P A GLG RA A+
Sbjct: 160 NGFSKLEEPPELNRQSP----NPRRGHAVPPTLVPLMNGSATPLPTALGLGGRAAASLAA 215
Query: 213 VRATPVTRVGSAAPS 227
V T +GSA P+
Sbjct: 216 VSGTAAASLGSAQPT 230
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 42.7 bits (99), Expect = 6e-04
Identities = 54/186 (29%), Positives = 78/186 (41%), Gaps = 19/186 (10%)
Query: 75 KRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSY---CGYLTW 131
KR +G+ +E + QA AP PRER S R + + + G
Sbjct: 44 KRSSGQAGNKSERELQARTPAP----PRERGESSSPRGPTLRGRAKTTRGRSQGAGATET 99
Query: 132 HSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQL-GYYNPFYFL----SPGAAGPD 186
+G +A A +P P+P S+P G + PQ AP P + G P + + + A P+
Sbjct: 100 SAGNSA--ATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPE 157
Query: 187 PRTA-AGISTPAPVAGLGPR-APHVQAS--VRATPVTRVGSAAP-SRSPSETGRQAGREY 241
PR G P A G R P +A+ +R G AP +R P T R GR
Sbjct: 158 PRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPG 217
Query: 242 VIPSLA 247
+P+ A
Sbjct: 218 CLPTAA 223
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 42.7 bits (99), Expect = 6e-04
Identities = 54/186 (29%), Positives = 78/186 (41%), Gaps = 19/186 (10%)
Query: 75 KRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSY---CGYLTW 131
KR +G+ +E + QA AP PRER S R + + + G
Sbjct: 44 KRSSGQAGNKSERELQARTPAP----PRERGESSSPRGPTLRGRAKTTRGRSQGAGATET 99
Query: 132 HSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQL-GYYNPFYFL----SPGAAGPD 186
+G +A A +P P+P S+P G + PQ AP P + G P + + + A P+
Sbjct: 100 SAGNSA--ATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPE 157
Query: 187 PRTA-AGISTPAPVAGLGPR-APHVQAS--VRATPVTRVGSAAP-SRSPSETGRQAGREY 241
PR G P A G R P +A+ +R G AP +R P T R GR
Sbjct: 158 PRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPG 217
Query: 242 VIPSLA 247
+P+ A
Sbjct: 218 CLPTAA 223
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 42.7 bits (99), Expect = 6e-04
Identities = 54/186 (29%), Positives = 78/186 (41%), Gaps = 19/186 (10%)
Query: 75 KRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSY---CGYLTW 131
KR +G+ +E + QA AP PRER S R + + + G
Sbjct: 44 KRSSGQAGNKSERELQARTPAP----PRERGESSSPRGPTLRGRAKTTRGRSQGAGATET 99
Query: 132 HSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQL-GYYNPFYFL----SPGAAGPD 186
+G +A A +P P+P S+P G + PQ AP P + G P + + + A P+
Sbjct: 100 SAGNSA--ATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPE 157
Query: 187 PRTA-AGISTPAPVAGLGPR-APHVQAS--VRATPVTRVGSAAP-SRSPSETGRQAGREY 241
PR G P A G R P +A+ +R G AP +R P T R GR
Sbjct: 158 PRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPG 217
Query: 242 VIPSLA 247
+P+ A
Sbjct: 218 CLPTAA 223
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 42.7 bits (99), Expect = 6e-04
Identities = 52/220 (23%), Positives = 71/220 (32%), Gaps = 51/220 (23%)
Query: 12 PPGQDDGGGDHEPVPSLRGPPTTAV------PCPRDDPQAE---------PQAPGRPTAP 56
P G + G P P P +T + P P D E P PG P
Sbjct: 545 PFGTNSQPGFRGPTPPSSRPSSTGLEDISPTPLPDSDEDEELDLGLGPRPPPEPGPPDPA 604
Query: 57 GLAAAAAADKLE------PPRELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSA 110
GL + A L+ P E G+ +SG E+ + AP +A +P
Sbjct: 605 GLLSQTAEVALDLVGDRTPTSEKMDEGQQSSGEDMEISDDEMPSAPITSADCPKPM---- 660
Query: 111 REYSRQVHEWLWQSYCGYLTWHSGLAAFPAYCSPQ---PSPQSFPSGGAAVPQAAAPPPP 167
+T + A P+ +P P P FP +P PPPP
Sbjct: 661 -----------------VVTPGAAAVAAPSVLAPTLPLPPPPGFPP----LPPPPPPPPP 699
Query: 168 QLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVAGLGPRAP 207
Q G+ P P P P ++ P P P P
Sbjct: 700 QPGF--PMPPPLPPPPPPPPPAHPAVTVPPPPLPAPPGVP 737
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 42.4 bits (98), Expect = 8e-04
Identities = 52/199 (26%), Positives = 71/199 (35%), Gaps = 50/199 (25%)
Query: 34 TAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPPRELRKRGEAASGSGAELQEQAGC 93
T V PR P A P+ P +++A+ EP R+R A G LQ A
Sbjct: 176 TEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGG----LQRPASR 231
Query: 94 EAPEAAAPRERPARL--SAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAYCSPQPSPQSF 151
+A P PAR SAR G PA+ S QP P+
Sbjct: 232 SLSSSATPLSSPARSGPSAR----------------------GTPRAPAHPS-QPKPKGL 268
Query: 152 PSGGAAVPQAAAPP---PPQLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVAGLGPRAPH 208
QA PP PP+ A P +++ ++TP+P A P AP
Sbjct: 269 --------QALRPPQVTPPR----------KDAAPALGPLSSSPLATPSPSAPPSPSAPP 310
Query: 209 VQASVRATPVTRVGSAAPS 227
++ + P T A S
Sbjct: 311 SLQTLPSPPATPPSQATTS 329
Score = 42.0 bits (97), Expect = 0.001
Identities = 62/222 (27%), Positives = 80/222 (36%), Gaps = 20/222 (9%)
Query: 18 GGGDHEPVPSLRGPPTTAVPCP-RDDPQAE--PQAPGRPTAPGLAAAAAADKLEPPRELR 74
GGG P T + P R P A P+AP P+ P A L PP+
Sbjct: 222 GGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQA---LRPPQVTP 278
Query: 75 KRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLT---W 131
R +AA G +P A P L + G T
Sbjct: 279 PRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQAT 338
Query: 132 HSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPP-PPQLGYYNPFYFLSPGAAGPDPRTA 190
HS L + P P PQ+ P+ A+P APP PP +P SP A P
Sbjct: 339 HSFLPSPPLSPLATPPPQAPPA--LALPPLQAPPSPPASPPLSPLATPSPQA----PNAL 392
Query: 191 AGISTPAPVAGLGPRAPHVQA--SVRATPVTRVGSAAPSRSP 230
A AP + P +P VQA S A+P + PS++P
Sbjct: 393 AVHLLQAPFS--PPPSPPVQAPFSPPASPPVSPSATPPSQAP 432
Score = 40.0 bits (92), Expect = 0.004
Identities = 58/231 (25%), Positives = 69/231 (29%), Gaps = 57/231 (24%)
Query: 3 EGPEEARGHPPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAA 62
+ P PP + PSL PP P P P P A P AP AA
Sbjct: 410 QAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAA- 468
Query: 63 AADKLEPPRELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLW 122
PP +L K A + A QA +P A+ P + P
Sbjct: 469 ------PPLQLAKPPPQAPPALATPPLQA-LPSPPASFPGQAP----------------- 504
Query: 123 QSYCGYLTWHSGLAAFPAYCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGA 182
S A+ P P PQ+ P A + Q PP P P
Sbjct: 505 ---------FSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAP---RRPPT 552
Query: 183 AGPDPRTAAGISTPAPVAGLGPRAPHVQASVRATPVTRVGSAAPSRSPSET 233
GPD +S P L P P PSRSPS T
Sbjct: 553 PGPD----TSVSGPRLTLALAPGPP----------------PPPSRSPSST 583
Score = 38.1 bits (87), Expect = 0.015
Identities = 53/205 (25%), Positives = 66/205 (32%), Gaps = 43/205 (20%)
Query: 26 PSLRGPPTTAVPCPRDDPQAEPQAPGRPTAP-GLAAAAAADKLEPPRELRKRGEAASGSG 84
P+L PP A P P P P A P AP LA PP + + +
Sbjct: 359 PALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPAS 418
Query: 85 AELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAYCSP 144
+ +P A P + P LAA P P
Sbjct: 419 PPV-------SPSATPPSQAP---------------------------PSLAAPPLQVPP 444
Query: 145 QPSPQSFPSGGAAVPQAAAPPP---PQLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVAG 201
P P S P +A P APPP P L P P A P + S PA G
Sbjct: 445 SP-PASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALP--SPPASFPG 501
Query: 202 LGPRAPHVQASVRATPVTRVGSAAP 226
P +P AS+ +P+ AP
Sbjct: 502 QAPFSP--SASLPMSPLATPPPQAP 524
Score = 37.7 bits (86), Expect = 0.019
Identities = 63/253 (24%), Positives = 80/253 (31%), Gaps = 73/253 (28%)
Query: 1 MAEGPEEARGHPPGQDDGGGDHEPVPSL----------RGPPTTAVPCPR--DDPQAEP- 47
+A P +A PP G P SL + PP A P + P A P
Sbjct: 484 LATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPT 543
Query: 48 -QAPGRPTAPGLAAAAAADKLE-------PPRELRKRGEAASGSGAELQEQAGCEAPE-- 97
QAP RP PG + + +L PP R SG + PE
Sbjct: 544 LQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEEL 603
Query: 98 ----------AAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSG----LAAFPAYCS 143
AAA A L+A C W G LA A +
Sbjct: 604 RGYDSGPEGGAAASPPPDAELAA---------------CHPAAWSRGPAPPLAFRGAPGA 648
Query: 144 PQPSPQSFPSGGA---------AVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGIS 194
P P P + G A P++A P P G +P GP P T+ G +
Sbjct: 649 PLPWPPATGPGSADGLCTIYETEGPESATPAP---GALDP---------GPSPGTSGGKA 696
Query: 195 TPAPVAGLGPRAP 207
AG R+P
Sbjct: 697 AAGAGAGASSRSP 709
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 42.4 bits (98), Expect = 8e-04
Identities = 55/212 (25%), Positives = 67/212 (31%), Gaps = 55/212 (25%)
Query: 12 PPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAP-----------GRPTAPGLAA 60
PP Q + P + PP P P+ Q +P P G APG+ +
Sbjct: 64 PPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGS 123
Query: 61 AAAADKLEPPRELRKRGEAASGSG---AELQEQAGCEAPEAAAPRERPARLSAREYSRQV 117
A A PP G A GSG A AP A P P+
Sbjct: 124 APPASSSAPPATPPTSG-APPGSGPGPTPTPPPAVTSAPPGAPPPTPPS----------- 171
Query: 118 HEWLWQSYCGYLTWHSGLAAFPAYC-SPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFY 176
SG+ P P P P + P G Q P P+ G
Sbjct: 172 ---------------SGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGG------ 210
Query: 177 FLSPGAAGPDPRTAAGISTPAPVAGLGPRAPH 208
PG GP P G+STP G P+ PH
Sbjct: 211 -KMPG--GPKPGGGPGLSTP----GGHPKPPH 235
Score = 29.6 bits (65), Expect = 5.2
Identities = 26/89 (29%), Positives = 29/89 (32%), Gaps = 19/89 (21%)
Query: 145 QPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVAGLGP 204
QP P P Q PPPPQ P A G P P G+G
Sbjct: 81 QPPPHQPPPHPQPHQQQQPPPPPQ--------------DSSKPVVAQG---PGPAPGVGS 123
Query: 205 RAPHVQASVRATPVTRVGSAAPSRSPSET 233
P ++ ATP T A P P T
Sbjct: 124 APPASSSAPPATPPT--SGAPPGSGPGPT 150
>gi|61966741 TMF regulated nuclear protein [Homo sapiens]
Length = 227
Score = 42.0 bits (97), Expect = 0.001
Identities = 38/117 (32%), Positives = 48/117 (41%), Gaps = 23/117 (19%)
Query: 3 EGPEEARGHPPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAA 62
EG E R PP +D P+PS + PP T P P Q+P P A G +A A
Sbjct: 15 EGTAEQRSPPPPRD-------PMPSSQPPPPTPTLTPTPTP---GQSPPLPDAAGASAGA 64
Query: 63 AADKLEPPRELRK--------RGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAR 111
A D +EL++ G A G G+ AG A E A R R + R
Sbjct: 65 AED-----QELQRWRQGASGIAGLAGPGGGSGAAAGAGGRALELAEARRRLLEVEGR 116
>gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 41.6 bits (96), Expect = 0.001
Identities = 54/228 (23%), Positives = 76/228 (33%), Gaps = 66/228 (28%)
Query: 32 PTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAAD---------KLEPPRELRKRGEAASG 82
P T PC A + T+P A+ D L P + EA S
Sbjct: 72 PGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVD-----EALSS 126
Query: 83 SGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAYC 142
SG++ C AP + P +P +LS W G+
Sbjct: 127 SGSDYYGSP-CSAPSPSTPSFQPPQLSP-----------WDGSFGHF------------- 161
Query: 143 SPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAG---------- 192
SP + + + +P+A+ PP P P +F GP P A
Sbjct: 162 SPSQTYEGLRAWTEQLPKASGPPQP------PAFFSFSPPTGPSPSLAQSPLKLFPSQAT 215
Query: 193 --------ISTPAPVAGLGPRAPHVQAS-VRATPV--TRVGSAAPSRS 229
S P GL P +PH++ S + TPV T+ S AP S
Sbjct: 216 HQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGS 263
>gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 41.6 bits (96), Expect = 0.001
Identities = 54/228 (23%), Positives = 76/228 (33%), Gaps = 66/228 (28%)
Query: 32 PTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAAD---------KLEPPRELRKRGEAASG 82
P T PC A + T+P A+ D L P + EA S
Sbjct: 72 PGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVD-----EALSS 126
Query: 83 SGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAYC 142
SG++ C AP + P +P +LS W G+
Sbjct: 127 SGSDYYGSP-CSAPSPSTPSFQPPQLSP-----------WDGSFGHF------------- 161
Query: 143 SPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAG---------- 192
SP + + + +P+A+ PP P P +F GP P A
Sbjct: 162 SPSQTYEGLRAWTEQLPKASGPPQP------PAFFSFSPPTGPSPSLAQSPLKLFPSQAT 215
Query: 193 --------ISTPAPVAGLGPRAPHVQAS-VRATPV--TRVGSAAPSRS 229
S P GL P +PH++ S + TPV T+ S AP S
Sbjct: 216 HQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGS 263
>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
isoform a [Homo sapiens]
Length = 1749
Score = 40.8 bits (94), Expect = 0.002
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 12 PPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPG------RPTAPGLAAAAAAD 65
P Q +G P + PPT A P + AEP PG RP A G A
Sbjct: 766 PANQPEGASSAAPGSPVPAPPTKASALPVEQGPAEPIPPGVASGGLRPDALGPTTAHHGP 825
Query: 66 KLEPPRELRKR-----GEAASGSGAELQEQAGCEAPEAAAPRERPA 106
+ PP+ R + G+ G GA + ++P++ R RPA
Sbjct: 826 R-HPPKPPRSKATERPGQEPEGPGATPAGERDDQSPDSVPERPRPA 870
Score = 30.8 bits (68), Expect = 2.3
Identities = 57/248 (22%), Positives = 79/248 (31%), Gaps = 40/248 (16%)
Query: 1 MAEGPEEARGHPPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPT--APGL 58
+A PE + G P D G + ++ GP PC + Q T P +
Sbjct: 627 VAPAPEPSPGFLPVNSDTG-----LVAVPGPVPGQHPCGEEATQLPAAFTSEATHFKPIV 681
Query: 59 AAAAAADKLEPP----RELRKRGEAASGSGAE---LQEQAGC---EAPEAAAPRERPARL 108
A A+ + P E +RG G G E L+ AG + P+ P P
Sbjct: 682 LAQNASVARDQPALAQEESEERGGQREGEGEEKLSLEAHAGSPSLKTPDGPVPGPGPQGA 741
Query: 109 SAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAYCSPQPSPQSFPSG-GAAVPQAAAPPPP 167
+ V Q C P +P + P G +A P + P PP
Sbjct: 742 APEPLGASVQRDSAQG---------------RPCPPPQAPANQPEGASSAAPGSPVPAPP 786
Query: 168 QLGYYNPFYFLSPGAAGP-DPRTAAGISTPAPVAGLGPRAPHVQASVRATPVTRVGSAAP 226
P + G A P P A+G P LGP H P + P
Sbjct: 787 TKASALP---VEQGPAEPIPPGVASGGLRP---DALGPTTAHHGPRHPPKPPRSKATERP 840
Query: 227 SRSPSETG 234
+ P G
Sbjct: 841 GQEPEGPG 848
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 40.8 bits (94), Expect = 0.002
Identities = 60/207 (28%), Positives = 73/207 (35%), Gaps = 60/207 (28%)
Query: 32 PTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLE---PPRELRKRGEAASGSGAELQ 88
P+TAVP P P P AP AP LA+AA ++ E PPR + +
Sbjct: 500 PSTAVPTPATTPAPAP-APAPAPAPALASAATKERTESEVPPRPASPKVTRS-------- 550
Query: 89 EQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAYCSP-QPS 147
PE AAP E AR + R PA P P
Sbjct: 551 ------PPETAAPVEDMARRTKR---------------------------PAPARPTMPP 577
Query: 148 PQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVA--GLGPR 205
PQ SG + P A P PP G SPG PR G S AP L P
Sbjct: 578 PQ--VSGSRSSP-PAPPLPPGSG--------SPGTPQALPRRLVGSSLRAPTVPPPLPPT 626
Query: 206 APH-VQASVRATPVTRVGSAAPSRSPS 231
P + R +P + ++ SPS
Sbjct: 627 PPQPARRQSRRSPASPSPASPGPASPS 653
Score = 32.7 bits (73), Expect = 0.62
Identities = 37/142 (26%), Positives = 49/142 (34%), Gaps = 21/142 (14%)
Query: 29 RGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPPRELRKRGEAASGSGAELQ 88
R PP TA P + + AP RPT P + + PP G + G+ L
Sbjct: 549 RSPPETAAPVEDMARRTKRPAPARPTMP--PPQVSGSRSSPPAPPLPPGSGSPGTPQALP 606
Query: 89 EQ---AGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAYCSPQ 145
+ + AP P AR SR+ + S A P SP
Sbjct: 607 RRLVGSSLRAPTVPPPLPPTPPQPARRQSRR-------------SPASPSPASPGPASPS 653
Query: 146 PSPQSFPSG---GAAVPQAAAP 164
P S P+ GAA + AP
Sbjct: 654 PVSLSNPAQVDLGAATAEGGAP 675
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 40.4 bits (93), Expect = 0.003
Identities = 71/251 (28%), Positives = 86/251 (34%), Gaps = 26/251 (10%)
Query: 2 AEGPEEARGHPP--GQDD--GGGDHEP-VPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAP 56
AEG A PP G+ GGG P PS R P A P P P A+ + P +A
Sbjct: 79 AEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAP---PAAKLRPPPEGSAG 135
Query: 57 GLAAAAAADKLEPPRELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQ 116
A AA + E G A A L +AG P P +
Sbjct: 136 SCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPG--PGKPAGPG 193
Query: 117 VHEWLWQSYCGYLTWHSGLAAF------PAYCSPQPSP-------QSFPSGGAAVPQAAA 163
+ L S + H+ A PA P P P Q+ P GAA P A A
Sbjct: 194 AAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPA 253
Query: 164 PPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVAGLGPRAPHVQASVRATPVTRVGS 223
P P +P P P T A P AG AP V A G
Sbjct: 254 APSPPAAPAPAAPAAAPPPPPPAPATLA--RPPGHPAGPPTAAPAVPPPAAAQNGGSAG- 310
Query: 224 AAPSRSPSETG 234
AAP+ +P+ G
Sbjct: 311 AAPAPAPAAGG 321
Score = 33.5 bits (75), Expect = 0.36
Identities = 55/218 (25%), Positives = 71/218 (32%), Gaps = 40/218 (18%)
Query: 24 PVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPPRELRKRGEAASGS 83
P ++ PP P P AP P AP AA AAA PP +
Sbjct: 234 PGTVIQTPPFVGAAAP-----PAPAAPSPPAAPAPAAPAAAPPPPPP------------A 276
Query: 84 GAELQEQAGCEA-PEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAYC 142
A L G A P AAP P + S G + A PA
Sbjct: 277 PATLARPPGHPAGPPTAAPAVPPPAAAQNGGS-----------AGAAPAPAPAAGGPAGV 325
Query: 143 SPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGP---------DPRTAAGI 193
S QP P + + A P A P ++ P + A+GP P +
Sbjct: 326 SGQPGPGA--AAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGAL 383
Query: 194 STPAPVAGLGPRAPHVQASVRATPVTRVGSAAPSRSPS 231
+PA V P P A VT+ S P+ + S
Sbjct: 384 PSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTS 421
Score = 32.0 bits (71), Expect = 1.1
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
Query: 143 SPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPA-PVAG 201
SP + + P+ A AAP PP G P P PR + PA P A
Sbjct: 66 SPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAK 125
Query: 202 LGPRAPHVQASVRATPVTRVGSAAPSRSPSETGRQAG 238
L P S P +A P +P+ + AG
Sbjct: 126 LRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAG 162
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 40.0 bits (92), Expect = 0.004
Identities = 58/217 (26%), Positives = 76/217 (35%), Gaps = 40/217 (18%)
Query: 28 LRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADK---LEPPRELRKRGEAASGS- 83
LRG T V C + + GR APG A +K PR RG G
Sbjct: 14 LRGSDTAGVTCRVSSQDGDRRGLGREAAPGAPAEGEKEKGKNSRRPRPTCSRGRTERGRV 73
Query: 84 --GAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAY 141
GA+ QE+ A AP RP +A VH L A
Sbjct: 74 ERGADHQERP------AGAPAHRPVPAAAAILRAAVHRVL--------------RVLRAA 113
Query: 142 CSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVAG 201
+ + + + G P+ APP QL G G +AG P G
Sbjct: 114 AAVRDAERGLRREG---PRRHAPPRKQLR----------GRRGAAGLVSAGHLGREPPRG 160
Query: 202 LGPRAPHVQASVRATPVTRVGSAAPS-RSPSETGRQA 237
G R P + ATP+ G + PS R+ + +G QA
Sbjct: 161 GGLRPPALVPVPLATPLLLEGRSEPSTRACAVSGGQA 197
>gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo
sapiens]
Length = 329
Score = 40.0 bits (92), Expect = 0.004
Identities = 58/217 (26%), Positives = 76/217 (35%), Gaps = 40/217 (18%)
Query: 28 LRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADK---LEPPRELRKRGEAASGS- 83
LRG T V C + + GR APG A +K PR RG G
Sbjct: 9 LRGSDTAGVTCRVSSQDGDRRGLGREAAPGAPAEGEKEKGKNSRRPRPTCSRGRTERGRV 68
Query: 84 --GAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAY 141
GA+ QE+ A AP RP +A VH L A
Sbjct: 69 ERGADHQERP------AGAPAHRPVPAAAAILRAAVHRVL--------------RVLRAA 108
Query: 142 CSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVAG 201
+ + + + G P+ APP QL G G +AG P G
Sbjct: 109 AAVRDAERGLRREG---PRRHAPPRKQLR----------GRRGAAGLVSAGHLGREPPRG 155
Query: 202 LGPRAPHVQASVRATPVTRVGSAAPS-RSPSETGRQA 237
G R P + ATP+ G + PS R+ + +G QA
Sbjct: 156 GGLRPPALVPVPLATPLLLEGRSEPSTRACAVSGGQA 192
>gi|239508758 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 40.0 bits (92), Expect = 0.004
Identities = 58/217 (26%), Positives = 76/217 (35%), Gaps = 40/217 (18%)
Query: 28 LRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADK---LEPPRELRKRGEAASGS- 83
LRG T V C + + GR APG A +K PR RG G
Sbjct: 9 LRGSDTAGVTCRVSSQDGDRRGLGREAAPGAPAEGEKEKGKNSRRPRPTCSRGRTERGRV 68
Query: 84 --GAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPAY 141
GA+ QE+ A AP RP +A VH L A
Sbjct: 69 ERGADHQERP------AGAPAHRPVPAAAAILRAAVHRVL--------------RVLRAA 108
Query: 142 CSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVAG 201
+ + + + G P+ APP QL G G +AG P G
Sbjct: 109 AAVRDAERGLRREG---PRRHAPPRKQLR----------GRRGAAGLVSAGHLGREPPRG 155
Query: 202 LGPRAPHVQASVRATPVTRVGSAAPS-RSPSETGRQA 237
G R P + ATP+ G + PS R+ + +G QA
Sbjct: 156 GGLRPPALVPVPLATPLLLEGRSEPSTRACAVSGGQA 192
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,308,482
Number of Sequences: 37866
Number of extensions: 1293222
Number of successful extensions: 12390
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 863
Number of HSP's that attempted gapping in prelim test: 8904
Number of HSP's gapped (non-prelim): 3810
length of query: 413
length of database: 18,247,518
effective HSP length: 105
effective length of query: 308
effective length of database: 14,271,588
effective search space: 4395649104
effective search space used: 4395649104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.