Search of human proteins with 7661730

Search of human proteins with 7661730

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7661730 mitochondrial ribosomal protein S28 [Homo sapiens]
         (187 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7661730 mitochondrial ribosomal protein S28 [Homo sapiens]         372   e-104
gi|4758416 golgi-specific brefeldin A resistant guanine nucleoti...    30   1.2  
gi|208879446 proenkephalin [Homo sapiens]                              30   1.2  
gi|5453876 proenkephalin [Homo sapiens]                                30   1.2  
gi|37655167 ring finger protein 135 isoform 1 [Homo sapiens]           28   6.0  
gi|194328693 storkhead box 1 isoform d [Homo sapiens]                  28   6.0  
gi|194328691 storkhead box 1 isoform a [Homo sapiens]                  28   6.0  
gi|63025200 storkhead box 1 isoform a [Homo sapiens]                   28   6.0  
gi|239752744 PREDICTED: hypothetical protein [Homo sapiens]            28   6.0  
gi|30794216 tripartite motif-containing 56 [Homo sapiens]              28   6.0  
gi|150418009 transforming, acidic coiled-coil containing protein...    28   6.0  
gi|94536793 tubulin tyrosine ligase-like family, member 7 [Homo ...    27   7.9  

>gi|7661730 mitochondrial ribosomal protein S28 [Homo sapiens]
          Length = 187

 Score =  372 bits (956), Expect = e-104
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MAALCRTRAVAAESHFLRVFLFFRPFRGVGTESGSESGSSNAKEPKTRAGGFASALERHS 60
           MAALCRTRAVAAESHFLRVFLFFRPFRGVGTESGSESGSSNAKEPKTRAGGFASALERHS
Sbjct: 1   MAALCRTRAVAAESHFLRVFLFFRPFRGVGTESGSESGSSNAKEPKTRAGGFASALERHS 60

Query: 61  ELLQKVEPLQKGSPKNVESFASMLRHSPLTQMGPAKDKLVIGRIFHIVENDLYIDFGGKF 120
           ELLQKVEPLQKGSPKNVESFASMLRHSPLTQMGPAKDKLVIGRIFHIVENDLYIDFGGKF
Sbjct: 61  ELLQKVEPLQKGSPKNVESFASMLRHSPLTQMGPAKDKLVIGRIFHIVENDLYIDFGGKF 120

Query: 121 HCVCRRPEVDGEKYQKGTRVRLRLLDLELTSRFLGATTDTTVLEANAVLLGIQESKDSRS 180
           HCVCRRPEVDGEKYQKGTRVRLRLLDLELTSRFLGATTDTTVLEANAVLLGIQESKDSRS
Sbjct: 121 HCVCRRPEVDGEKYQKGTRVRLRLLDLELTSRFLGATTDTTVLEANAVLLGIQESKDSRS 180

Query: 181 KEEHHEK 187
           KEEHHEK
Sbjct: 181 KEEHHEK 187


>gi|4758416 golgi-specific brefeldin A resistant guanine nucleotide
           exchange factor 1 [Homo sapiens]
          Length = 1859

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 12/52 (23%), Positives = 27/52 (51%)

Query: 66  VEPLQKGSPKNVESFASMLRHSPLTQMGPAKDKLVIGRIFHIVENDLYIDFG 117
           ++P  +G+ + +E+ A  + H+      PA D++V+ +I  ++   L    G
Sbjct: 98  IDPTHEGTAEGMENMADAVTHARFVGTDPASDEVVLMKILQVLRTLLLTPVG 149


>gi|208879446 proenkephalin [Homo sapiens]
          Length = 267

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 33  SGSESGSSNAKEPKTRAGGFASALERHSELLQKVEPLQK 71
           S  + GS N +E   R GGF   L+R  +L  + + LQK
Sbjct: 170 SHHQDGSDNEEEVSKRYGGFMRGLKRSPQLEDEAKELQK 208


>gi|5453876 proenkephalin [Homo sapiens]
          Length = 267

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 33  SGSESGSSNAKEPKTRAGGFASALERHSELLQKVEPLQK 71
           S  + GS N +E   R GGF   L+R  +L  + + LQK
Sbjct: 170 SHHQDGSDNEEEVSKRYGGFMRGLKRSPQLEDEAKELQK 208


>gi|37655167 ring finger protein 135 isoform 1 [Homo sapiens]
          Length = 432

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)

Query: 34  GSESGSSNAKEPKTRAGGFASALERH-----SELLQKVEPLQKGSPKNVESFASMLRHSP 88
           GS S SS A  P+ R      A+E+       EL + VE L       V+   S+    P
Sbjct: 105 GSSSLSSAAARPRRRPELQRVAVEKSITEVAQELTELVEHL-------VDIVRSLQNQRP 157

Query: 89  LTQMGPAKDKLVIGRIF 105
           L++ GP  +  ++G+ F
Sbjct: 158 LSESGPDNELSILGKAF 174


>gi|194328693 storkhead box 1 isoform d [Homo sapiens]
          Length = 879

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 30  GTESGSESGSSNAKEPKTRAGG-----FASALERHSELLQKVEPLQKGSP 74
           GTE+ S +G S    P+T++ G         L+R    LQ VE  +   P
Sbjct: 815 GTENHSMAGDSGIDSPRTQSLGSNNSVILDGLKRRQNFLQNVEGTKSSQP 864


>gi|194328691 storkhead box 1 isoform a [Homo sapiens]
          Length = 989

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 30  GTESGSESGSSNAKEPKTRAGG-----FASALERHSELLQKVEPLQKGSP 74
           GTE+ S +G S    P+T++ G         L+R    LQ VE  +   P
Sbjct: 925 GTENHSMAGDSGIDSPRTQSLGSNNSVILDGLKRRQNFLQNVEGTKSSQP 974


>gi|63025200 storkhead box 1 isoform a [Homo sapiens]
          Length = 989

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 30  GTESGSESGSSNAKEPKTRAGG-----FASALERHSELLQKVEPLQKGSP 74
           GTE+ S +G S    P+T++ G         L+R    LQ VE  +   P
Sbjct: 925 GTENHSMAGDSGIDSPRTQSLGSNNSVILDGLKRRQNFLQNVEGTKSSQP 974


>gi|239752744 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 361

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 15/58 (25%)

Query: 46  KTRAGGFASALERHSELLQKVEPLQKG----------SPKNVESFASMLRHSPLTQMG 93
           + + G FA+ LE H EL   + PLQ G          +PK+ +S  S++   PLT +G
Sbjct: 103 REKCGAFAAGLELHREL--GLHPLQAGAAAAHTPYPCAPKSADSQLSLV---PLTAVG 155


>gi|30794216 tripartite motif-containing 56 [Homo sapiens]
          Length = 755

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 18/67 (26%), Positives = 23/67 (34%)

Query: 28  GVGTESGSESGSSNAKEPKTRAGGFASALERHSELLQKVEPLQKGSPKNVESFASMLRHS 87
           G GT+ G ES S    EPKT   G             K E  Q    +  ++       +
Sbjct: 383 GAGTQGGEESQSRREDEPKTERQGGVQPQAGDGAQTPKEEKAQTTREEGAQTLEEDRAQT 442

Query: 88  PLTQMGP 94
           P    GP
Sbjct: 443 PHEDGGP 449


>gi|150418009 transforming, acidic coiled-coil containing protein 2
           isoform a [Homo sapiens]
          Length = 2948

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 34  GSESGSSNAKEPKTRAGGFASALERHSELLQKVEPLQKGSPKNVESFASMLRHSPLTQMG 93
           G + G   ++E K  AGGF  A  R      +V P    + +     +++L  SPL  M 
Sbjct: 217 GDQPGGFESQE-KEAAGGFPPAESRQGVASVQVTPEAPAAAQQGTESSAVLEKSPLKPMA 275

Query: 94  P 94
           P
Sbjct: 276 P 276


>gi|94536793 tubulin tyrosine ligase-like family, member 7 [Homo
           sapiens]
          Length = 887

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 17  LRVFLFFRPFRGVGTESGSESGSSNAKEPKTRAGGFASALERHSELLQKVEPLQKGSPKN 76
           L++FL+      +GTE       SN  +       ++  + +H+E  ++ E   KGS ++
Sbjct: 216 LKIFLYHDGLVRMGTEKYIPPNESNLTQLYMHLTNYS--VNKHNEHFERDETENKGSKRS 273

Query: 77  VESFASMLR 85
           ++ F   L+
Sbjct: 274 IKWFTEFLQ 282


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,658,490
Number of Sequences: 37866
Number of extensions: 279362
Number of successful extensions: 814
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 13
length of query: 187
length of database: 18,247,518
effective HSP length: 96
effective length of query: 91
effective length of database: 14,612,382
effective search space: 1329726762
effective search space used: 1329726762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.