BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657405 odorant binding protein 2A precursor [Homo sapiens]
(170 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657405 odorant binding protein 2A precursor [Homo sapiens] 347 4e-96
gi|7657407 odorant binding protein 2B [Homo sapiens] 310 5e-85
gi|4504963 lipocalin 1 precursor [Homo sapiens] 143 8e-35
gi|169177936 PREDICTED: similar to hCG1795014 [Homo sapiens] 46 2e-05
gi|169179152 PREDICTED: similar to hCG1795014 [Homo sapiens] 46 2e-05
gi|169181274 PREDICTED: similar to hCG1795014 [Homo sapiens] 46 2e-05
gi|32171249 prostaglandin H2 D-isomerase [Homo sapiens] 39 0.002
gi|65507519 glycodelin precursor [Homo sapiens] 37 0.011
gi|65507501 glycodelin precursor [Homo sapiens] 37 0.011
gi|48717447 lipocalin 9 [Homo sapiens] 35 0.031
gi|148226288 lipocalin-like 1 [Homo sapiens] 33 0.15
gi|38455402 lipocalin 2 [Homo sapiens] 32 0.20
gi|126116598 lipocalin 10 [Homo sapiens] 32 0.34
gi|24307939 chaperonin containing TCP1, subunit 5 (epsilon) [Hom... 30 1.0
gi|167857790 orosomucoid 1 precursor [Homo sapiens] 28 2.9
gi|41872631 fatty acid synthase [Homo sapiens] 28 3.8
gi|62988357 lipocalin 8 [Homo sapiens] 28 3.8
gi|89886464 lipocalcin 12 [Homo sapiens] 27 8.5
gi|7657359 contactin 5 isoform long [Homo sapiens] 27 8.5
gi|28373129 contactin 5 isoform short [Homo sapiens] 27 8.5
gi|31742492 Nedd4 binding protein 2 [Homo sapiens] 27 8.5
gi|40018629 hypothetical protein LOC23325 [Homo sapiens] 27 8.5
>gi|7657405 odorant binding protein 2A precursor [Homo sapiens]
Length = 170
Score = 347 bits (889), Expect = 4e-96
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MKTLFLGVTLGLAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGG 60
MKTLFLGVTLGLAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGG
Sbjct: 1 MKTLFLGVTLGLAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGG 60
Query: 61 NLEATFTFMREDRCIQKKILMRKTEEPGKFSAYGGRKLIYLQELPGTDDYVFYCKDQRRG 120
NLEATFTFMREDRCIQKKILMRKTEEPGKFSAYGGRKLIYLQELPGTDDYVFYCKDQRRG
Sbjct: 61 NLEATFTFMREDRCIQKKILMRKTEEPGKFSAYGGRKLIYLQELPGTDDYVFYCKDQRRG 120
Query: 121 GLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCVLEH 170
GLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCVLEH
Sbjct: 121 GLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCVLEH 170
>gi|7657407 odorant binding protein 2B [Homo sapiens]
Length = 170
Score = 310 bits (793), Expect = 5e-85
Identities = 153/170 (90%), Positives = 158/170 (92%)
Query: 1 MKTLFLGVTLGLAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGG 60
MKTLFLGVTLGLAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGG
Sbjct: 1 MKTLFLGVTLGLAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGG 60
Query: 61 NLEATFTFMREDRCIQKKILMRKTEEPGKFSAYGGRKLIYLQELPGTDDYVFYCKDQRRG 120
LEATFTFMREDRCIQKKILMRKTEEPGK+SAYGGRKL+YLQELP D Y+FYCKDQ G
Sbjct: 61 KLEATFTFMREDRCIQKKILMRKTEEPGKYSAYGGRKLMYLQELPRRDHYIFYCKDQHHG 120
Query: 121 GLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCVLEH 170
GL +MGKLVGRN +TN EALEEFKKLVQ KGLSEEDIF PLQTGSCV EH
Sbjct: 121 GLLHMGKLVGRNSDTNREALEEFKKLVQRKGLSEEDIFTPLQTGSCVPEH 170
>gi|4504963 lipocalin 1 precursor [Homo sapiens]
Length = 176
Score = 143 bits (360), Expect = 8e-35
Identities = 78/172 (45%), Positives = 108/172 (62%), Gaps = 7/172 (4%)
Query: 1 MKTLFLGVTLGLAAALS----FTLEEE--DITGTWYVKAMVVDKDFPEDRRPRKVSPVKV 54
MK L L V+LGL AAL +EE D++GTWY+KAM VD++FPE V+P+ +
Sbjct: 1 MKPLLLAVSLGLIAALQAHHLLASDEEIQDVSGTWYLKAMTVDREFPE-MNLESVTPMTL 59
Query: 55 TALGGGNLEATFTFMREDRCIQKKILMRKTEEPGKFSAYGGRKLIYLQELPGTDDYVFYC 114
T L GGNLEA T + RC + K ++ KT+EPGK++A GG+ + Y+ D Y+FYC
Sbjct: 60 TTLEGGNLEAKVTMLISGRCQEVKAVLEKTDEPGKYTADGGKHVAYIIRSHVKDHYIFYC 119
Query: 115 KDQRRGGLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSC 166
+ + G KLVGR+P NLEALE+F+K +GLS E I +P Q+ +C
Sbjct: 120 EGELHGKPVRGVKLVGRDPKNNLEALEDFEKAAGARGLSTESILIPRQSETC 171
>gi|169177936 PREDICTED: similar to hCG1795014 [Homo sapiens]
Length = 181
Score = 45.8 bits (107), Expect = 2e-05
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 12/172 (6%)
Query: 4 LFLGVTLGLAA------ALSFTLEEEDITGTWYVKAMVVD-KDFPEDRRPRKVSPVKVTA 56
L LG+TL A A++ + I+G WY + D ++ E+ +V +
Sbjct: 6 LCLGLTLVCAQEEENNDAVTSNFDLSKISGEWYSVLLASDCREKIEEDGSMRVFVKHIDY 65
Query: 57 LGGGNLEATFTFMREDRCIQKKILMRKTEEPGKFSA-YGGRKLIYLQELPGTDDYVFYCK 115
LG +L TF C + + + TE+ S Y G +I + E + FY K
Sbjct: 66 LGNSSL----TFKLNGNCTEINLACKPTEKNAICSTDYNGLNVIDILETDYDNYIYFYNK 121
Query: 116 DQRRGGLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCV 167
+ + G M +L R P+ + + E F K + G+ +E+IF + C+
Sbjct: 122 NIKNGETFLMLELYVRTPDVSSQLKERFVKYCEEHGIDKENIFDLTKVDRCL 173
>gi|169179152 PREDICTED: similar to hCG1795014 [Homo sapiens]
Length = 181
Score = 45.8 bits (107), Expect = 2e-05
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 12/172 (6%)
Query: 4 LFLGVTLGLAA------ALSFTLEEEDITGTWYVKAMVVD-KDFPEDRRPRKVSPVKVTA 56
L LG+TL A A++ + I+G WY + D ++ E+ +V +
Sbjct: 6 LCLGLTLVCAQEEENNDAVTSNFDLSKISGEWYSVLLASDCREKIEEDGSMRVFVKHIDY 65
Query: 57 LGGGNLEATFTFMREDRCIQKKILMRKTEEPGKFSA-YGGRKLIYLQELPGTDDYVFYCK 115
LG +L TF C + + + TE+ S Y G +I + E + FY K
Sbjct: 66 LGNSSL----TFKLNGNCTEINLACKPTEKNAICSTDYNGLNVIDILETDYDNYIYFYNK 121
Query: 116 DQRRGGLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCV 167
+ + G M +L R P+ + + E F K + G+ +E+IF + C+
Sbjct: 122 NIKNGETFLMLELYVRTPDVSSQLKERFVKYCEEHGIDKENIFDLTKVDRCL 173
>gi|169181274 PREDICTED: similar to hCG1795014 [Homo sapiens]
Length = 181
Score = 45.8 bits (107), Expect = 2e-05
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 12/172 (6%)
Query: 4 LFLGVTLGLAA------ALSFTLEEEDITGTWYVKAMVVD-KDFPEDRRPRKVSPVKVTA 56
L LG+TL A A++ + I+G WY + D ++ E+ +V +
Sbjct: 6 LCLGLTLVCAQEEENNDAVTSNFDLSKISGEWYSVLLASDCREKIEEDGSMRVFVKHIDY 65
Query: 57 LGGGNLEATFTFMREDRCIQKKILMRKTEEPGKFSA-YGGRKLIYLQELPGTDDYVFYCK 115
LG +L TF C + + + TE+ S Y G +I + E + FY K
Sbjct: 66 LGNSSL----TFKLNGNCTEINLACKPTEKNAICSTDYNGLNVIDILETDYDNYIYFYNK 121
Query: 116 DQRRGGLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCV 167
+ + G M +L R P+ + + E F K + G+ +E+IF + C+
Sbjct: 122 NIKNGETFLMLELYVRTPDVSSQLKERFVKYCEEHGIDKENIFDLTKVDRCL 173
>gi|32171249 prostaglandin H2 D-isomerase [Homo sapiens]
Length = 190
Score = 38.9 bits (89), Expect = 0.002
Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 6/155 (3%)
Query: 21 EEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALG-GGNLEATFTFMREDRCIQKKI 79
+++ G W+ + + + +++ V A G L T TF+R+++C + +
Sbjct: 35 QQDKFLGRWFSAGLASNSSWLREKKAALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTM 94
Query: 80 LMRKTEEPGKFS----AYGGRKLIYLQELPGTDDYVFYCKDQRRGGLRY-MGKLVGRNPN 134
L++ G +S +G + + E + Y + + G + M L R
Sbjct: 95 LLQPAGSLGSYSYRSPHWGSTYSVSVVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQT 154
Query: 135 TNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCVLE 169
E E+F + +G +E+ I QT C+ E
Sbjct: 155 PRAELKEKFTAFCKAQGFTEDTIVFLPQTDKCMTE 189
>gi|65507519 glycodelin precursor [Homo sapiens]
Length = 180
Score = 36.6 bits (83), Expect = 0.011
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 20 LEEEDITGTWYVKAMVVDKD--FPEDRRPRKVSPVKVTALGGGNLEATFTFMREDRCIQK 77
LE + GTW+ AM + + P +V + NLE + C++K
Sbjct: 28 LELPKLAGTWHSMAMATNNISLMATLKAPLRVHITSLLPTPEDNLEIVLHRWENNSCVEK 87
Query: 78 KILMRKTEEPGKF 90
K+L KTE P KF
Sbjct: 88 KVLGEKTENPKKF 100
>gi|65507501 glycodelin precursor [Homo sapiens]
Length = 180
Score = 36.6 bits (83), Expect = 0.011
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 20 LEEEDITGTWYVKAMVVDKD--FPEDRRPRKVSPVKVTALGGGNLEATFTFMREDRCIQK 77
LE + GTW+ AM + + P +V + NLE + C++K
Sbjct: 28 LELPKLAGTWHSMAMATNNISLMATLKAPLRVHITSLLPTPEDNLEIVLHRWENNSCVEK 87
Query: 78 KILMRKTEEPGKF 90
K+L KTE P KF
Sbjct: 88 KVLGEKTENPKKF 100
>gi|48717447 lipocalin 9 [Homo sapiens]
Length = 176
Score = 35.0 bits (79), Expect = 0.031
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 1 MKTLFLGVTLGLAAALSF---TLEEED-----ITGTWYVKAMVVDK-DFPEDRRPRKVSP 51
M L L + L L AA F T+ + + ++G WY M D + ++ +V
Sbjct: 1 MALLLLSLGLSLIAAQEFDPHTVMQRNYNVARVSGVWYSIFMASDDLNRIKENGDLRVFV 60
Query: 52 VKVTALGGGNLEATFTFMREDRCIQKKILMRKTEEPGKFSA-YGGRKLIYLQELPGTDDY 110
+ L G+L F +M + C+ ++ KTE+ G++S Y G+ + + E
Sbjct: 61 RNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYRLFI 120
Query: 111 VFYCKDQRRG 120
F+ ++ R G
Sbjct: 121 TFHLQNFRNG 130
>gi|148226288 lipocalin-like 1 [Homo sapiens]
Length = 164
Score = 32.7 bits (73), Expect = 0.15
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 37 DKDFPEDRRPRKVSPVKVTALGGGNLEATFTF-MREDRCIQKKILMRKTEEPGKFSAYGG 95
D+DF + + K++ V VT LG G+L F + C + + PG+FS
Sbjct: 8 DQDFLDSKDTMKMAVVLVTPLGNGDLALKFGYPTPHGGCQKMDTTFTEGAVPGQFSNPAM 67
Query: 96 RKLIYLQELPGTDDYVFYCKDQRRGGLR------YMGKLVGRNP 133
+ + R+GGLR Y G+ GR P
Sbjct: 68 ALSDIRVAFSDYQHFALLYLEMRKGGLRNQWLQLYGGRAAGRRP 111
>gi|38455402 lipocalin 2 [Homo sapiens]
Length = 198
Score = 32.3 bits (72), Expect = 0.20
Identities = 36/167 (21%), Positives = 57/167 (34%), Gaps = 23/167 (13%)
Query: 16 LSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGGNLEATFTFMREDRCI 75
L ++ G WYV + + ED+ P+K+ + T R+ +C
Sbjct: 38 LQQNFQDNQFQGKWYVVGLAGNAILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCD 97
Query: 76 QKKILMRKTEEPGKFSAYGGRKLIYLQELPGTDDY--------------VFYCK-DQRRG 120
+PG+F+ L ++ PG Y VF+ K Q R
Sbjct: 98 YWIRTFVPGCQPGEFT------LGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNRE 151
Query: 121 GLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCV 167
+ L GR E E F + + GL E I P+ C+
Sbjct: 152 YFKIT--LYGRTKELTSELKENFIRFSKSLGLPENHIVFPVPIDQCI 196
>gi|126116598 lipocalin 10 [Homo sapiens]
Length = 200
Score = 31.6 bits (70), Expect = 0.34
Identities = 39/160 (24%), Positives = 60/160 (37%), Gaps = 18/160 (11%)
Query: 17 SFTLEEEDITGTWYVKAMVVDKDF---PEDRRPRKVSPVKVTALGGGNLEATFTFMREDR 73
S L +G WY+ A D D+R S VKV +G L F R
Sbjct: 32 SHALNWNKFSGFWYILATATDAQGFLPARDKRKLGASVVKVNKVG--QLRVLLAFRRLKG 89
Query: 74 CIQKKILMRKTEEP---GKFSAYG--------GRKLIYLQELPGTD-DYVFYCKDQRRGG 121
C +++++RK + G AY G K + + TD Y R
Sbjct: 90 CQSQEVILRKDGKKPVFGNACAYAAGPREGQEGVKGVKAFHVLSTDYSYGLVYLRLGRAT 149
Query: 122 LRYMGKLVGRNPN-TNLEALEEFKKLVQHKGLSEEDIFMP 160
Y L+ N ++ ++L+EF GLS+ + +P
Sbjct: 150 QNYKNLLLFHRQNVSSFQSLKEFMDACDILGLSKAAVILP 189
>gi|24307939 chaperonin containing TCP1, subunit 5 (epsilon) [Homo
sapiens]
Length = 541
Score = 30.0 bits (66), Expect = 1.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 28 TWYVKAMVVDKDFPEDRRPRKVSPVKVTAL 57
T +K ++VDKDF + P+KV K+ L
Sbjct: 222 TKLIKGVIVDKDFSHPQMPKKVEDAKIAIL 251
>gi|167857790 orosomucoid 1 precursor [Homo sapiens]
Length = 201
Score = 28.5 bits (62), Expect = 2.9
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 70 REDRCIQKKILMRKTEEPGKFSAY--GGRKLIYLQELPGTDDYV--FYCKDQRRGGLRYM 125
R+D+CI + E G S Y G +L L T Y+ F D++ GL
Sbjct: 86 RQDQCIYNTTYLNVQRENGTISRYVGGQEHFAHLLILRDTKTYMLAFDVNDEKNWGL--- 142
Query: 126 GKLVGRNPNTNLEALEEFKKLVQHKGLSEEDI 157
+ P T E L EF + + + + D+
Sbjct: 143 -SVYADKPETTKEQLGEFYEALDCLRIPKSDV 173
>gi|41872631 fatty acid synthase [Homo sapiens]
Length = 2511
Score = 28.1 bits (61), Expect = 3.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 49 VSPVKVTALGGGNLEATFTFMREDRCIQKKILMRKTEEP 87
V P+K T G +E F +M + + I K ++ EEP
Sbjct: 1823 VRPLKCTVFHGAQVEDAFRYMAQGKHIGKVVVQVLAEEP 1861
>gi|62988357 lipocalin 8 [Homo sapiens]
Length = 152
Score = 28.1 bits (61), Expect = 3.8
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 20 LEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGGNLEATFTFMREDRCIQKKI 79
L+ + I G W + D+ P++V + +T L G NL + C +KI
Sbjct: 4 LDRQKIGGFWREVGVASDQSLVLTA-PKRVEGLFLT-LSGSNLTVKVAYNSSGSCEIEKI 61
Query: 80 LMRKTEEPGKFSAYGGRKL 98
+ + + GKF+ G R++
Sbjct: 62 VGSEIDSTGKFAFPGHREI 80
>gi|89886464 lipocalcin 12 [Homo sapiens]
Length = 192
Score = 26.9 bits (58), Expect = 8.5
Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 20/151 (13%)
Query: 27 GTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGGNLEATFTFMREDRCIQKKILMRKTEE 86
G W+V + + PE R G E R C ++ +
Sbjct: 41 GEWFVLGLAGNSFRPEHRALLNAFTATFELSDDGRFEVWNAMTRGQHCDTWSYVLIPAAQ 100
Query: 87 PGKFSAYGGRKLIYLQELPGTD---------DYVFYCKDQRRGGLRYMG----KLVGRNP 133
PG+F+ G + PG D DY + R + L+GR+
Sbjct: 101 PGQFTVDHGVE-------PGADREETRVVDSDYTQFALMLSRRHTSRLAVLRISLLGRSW 153
Query: 134 NTNLEALEEFKKLVQHKGLSEEDIFMPLQTG 164
L++F L + +GLS+++I P TG
Sbjct: 154 LLPPGTLDQFICLGRAQGLSDDNIVFPDVTG 184
>gi|7657359 contactin 5 isoform long [Homo sapiens]
Length = 1100
Score = 26.9 bits (58), Expect = 8.5
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 12 LAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGGNLEATFTFMRE 71
L+ TL + + G + K ++ FP K + VK+ GN T T+M+
Sbjct: 281 LSPPTPLTLRNDGVMGEYEPK---IEVHFPFTVTAAKGTTVKMECFALGNPVPTITWMKV 337
Query: 72 DRCIQKKILMRKTE 85
+ I K +RK++
Sbjct: 338 NGYIPSKARLRKSQ 351
>gi|28373129 contactin 5 isoform short [Homo sapiens]
Length = 1026
Score = 26.9 bits (58), Expect = 8.5
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 12 LAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGGNLEATFTFMRE 71
L+ TL + + G + K ++ FP K + VK+ GN T T+M+
Sbjct: 207 LSPPTPLTLRNDGVMGEYEPK---IEVHFPFTVTAAKGTTVKMECFALGNPVPTITWMKV 263
Query: 72 DRCIQKKILMRKTE 85
+ I K +RK++
Sbjct: 264 NGYIPSKARLRKSQ 277
>gi|31742492 Nedd4 binding protein 2 [Homo sapiens]
Length = 1770
Score = 26.9 bits (58), Expect = 8.5
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 22/75 (29%)
Query: 89 KFSAYGGRKLIYLQELPG---------------------TDDYVFYCKDQRRGGLRYMGK 127
K ++Y G L+ L+ LPG TDDY FY Q + ++Y+G+
Sbjct: 433 KKTSYVGLVLVLLRGLPGSGKSFLARTLQEDNPSGVILSTDDY-FYINGQYQFDVKYLGE 491
Query: 128 LVGRNPNTNLEALEE 142
N N EA E+
Sbjct: 492 AHEWNQNRAKEAFEK 506
>gi|40018629 hypothetical protein LOC23325 [Homo sapiens]
Length = 1173
Score = 26.9 bits (58), Expect = 8.5
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 113 YCKDQRRGGLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCVLEH 170
Y + R GGL + P+ LE + F++LV+ +GL+EE + S + +H
Sbjct: 925 YVRMIRSGGLHCSSNAIRFVPD--LEDIVNFEELVKEEGLAEETLKAARHLDSVLSDH 980
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.139 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,626,398
Number of Sequences: 37866
Number of extensions: 292461
Number of successful extensions: 506
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 22
length of query: 170
length of database: 18,247,518
effective HSP length: 95
effective length of query: 75
effective length of database: 14,650,248
effective search space: 1098768600
effective search space used: 1098768600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.