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Search of human proteins with 7657044
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657044 nerve growth factor receptor (TNFRSF16) associated
protein 1 isoform b [Homo sapiens]
(111 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46094060 nerve growth factor receptor (TNFRSF16) associated p... 239 5e-64
gi|7657044 nerve growth factor receptor (TNFRSF16) associated pr... 239 5e-64
gi|46094062 nerve growth factor receptor (TNFRSF16) associated p... 218 6e-58
gi|228008288 brain expressed, X-linked 5 [Homo sapiens] 117 2e-27
gi|61175244 brain expressed, X-linked 5 [Homo sapiens] 117 2e-27
gi|189095254 BEX family member 4 [Homo sapiens] 108 1e-24
gi|122937245 BEX family member 4 [Homo sapiens] 108 1e-24
gi|68533249 brain expressed, X-linked 1 [Homo sapiens] 78 2e-15
gi|14249132 brain expressed X-linked 2 [Homo sapiens] 70 5e-13
gi|23397409 transcription elongation factor A (SII)-like 7 [Homo... 41 2e-04
gi|55749466 transcription elongation factor A (SII)-like 8 [Homo... 36 0.008
gi|23503247 transcription elongation factor A (SII)-like 8 [Homo... 36 0.008
gi|239757005 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|239751519 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|239746026 PREDICTED: hypothetical protein XP_002344173 [Homo ... 29 0.92
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 28 1.6
gi|154091020 leucine-rich repeats and calponin homology (CH) dom... 28 2.1
gi|55749424 transcription elongation factor A (SII)-like 1 [Homo... 28 2.1
gi|55749406 transcription elongation factor A (SII)-like 1 [Homo... 28 2.1
gi|55749397 transcription elongation factor A (SII)-like 1 [Homo... 28 2.1
gi|156142199 euchromatic histone-lysine N-methyltransferase 2 is... 27 2.7
gi|156142197 euchromatic histone-lysine N-methyltransferase 2 is... 27 2.7
gi|116875834 zinc finger protein 74 [Homo sapiens] 27 2.7
gi|133922562 phosphoglucomutase 5 [Homo sapiens] 27 2.7
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 27 2.7
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 27 3.5
gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 27 3.5
gi|239740726 PREDICTED: similar to HLA complex group 27 [Homo sa... 27 3.5
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 27 3.5
gi|224591401 phosphatidylinositol 4-kinase type 2 beta [Homo sap... 27 4.6
>gi|46094060 nerve growth factor receptor (TNFRSF16) associated
protein 1 isoform b [Homo sapiens]
Length = 111
Score = 239 bits (609), Expect = 5e-64
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM 60
MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM
Sbjct: 1 MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM 60
Query: 61 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
Sbjct: 61 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
>gi|7657044 nerve growth factor receptor (TNFRSF16) associated
protein 1 isoform b [Homo sapiens]
Length = 111
Score = 239 bits (609), Expect = 5e-64
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM 60
MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM
Sbjct: 1 MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM 60
Query: 61 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
Sbjct: 61 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
>gi|46094062 nerve growth factor receptor (TNFRSF16) associated
protein 1 isoform a [Homo sapiens]
Length = 101
Score = 218 bits (556), Expect = 6e-58
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 11 MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIF 70
MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIF
Sbjct: 1 MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIF 60
Query: 71 MEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
MEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
Sbjct: 61 MEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 101
>gi|228008288 brain expressed, X-linked 5 [Homo sapiens]
Length = 111
Score = 117 bits (293), Expect = 2e-27
Identities = 65/114 (57%), Positives = 81/114 (71%), Gaps = 6/114 (5%)
Query: 1 MANIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQIN-- 57
M N+ +EN+ +E+ P+QN E LGGGE +P GN +G AP F +PNR ++
Sbjct: 1 MENVPKENKVVEKAPVQN--EAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNI 58
Query: 58 DGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
D + GDGDDME FMEEMRE+RRK+RELQLR LRIL+G+ HHDHHDEFCLMP
Sbjct: 59 DMIDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGD-PPHHDHHDEFCLMP 111
>gi|61175244 brain expressed, X-linked 5 [Homo sapiens]
Length = 111
Score = 117 bits (293), Expect = 2e-27
Identities = 65/114 (57%), Positives = 81/114 (71%), Gaps = 6/114 (5%)
Query: 1 MANIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQIN-- 57
M N+ +EN+ +E+ P+QN E LGGGE +P GN +G AP F +PNR ++
Sbjct: 1 MENVPKENKVVEKAPVQN--EAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNI 58
Query: 58 DGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
D + GDGDDME FMEEMRE+RRK+RELQLR LRIL+G+ HHDHHDEFCLMP
Sbjct: 59 DMIDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGD-PPHHDHHDEFCLMP 111
>gi|189095254 BEX family member 4 [Homo sapiens]
Length = 120
Score = 108 bits (269), Expect = 1e-24
Identities = 61/111 (54%), Positives = 72/111 (64%), Gaps = 8/111 (7%)
Query: 3 NIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGN-RRGQARRLAPNFRWAIPNRQINDGM 60
N QENE EQ P QN EE R LGGGEG +P GN RRG+ RRL PNFRWAIPNR I
Sbjct: 16 NAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVPNFRWAIPNRHIEHNE 75
Query: 61 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
DD+E F+ +M EI+RK RE Q+R+ +R E NH+D FCL+P
Sbjct: 76 A--RDDVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYD----FCLIP 120
>gi|122937245 BEX family member 4 [Homo sapiens]
Length = 120
Score = 108 bits (269), Expect = 1e-24
Identities = 61/111 (54%), Positives = 72/111 (64%), Gaps = 8/111 (7%)
Query: 3 NIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGN-RRGQARRLAPNFRWAIPNRQINDGM 60
N QENE EQ P QN EE R LGGGEG +P GN RRG+ RRL PNFRWAIPNR I
Sbjct: 16 NAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVPNFRWAIPNRHIEHNE 75
Query: 61 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
DD+E F+ +M EI+RK RE Q+R+ +R E NH+D FCL+P
Sbjct: 76 A--RDDVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYD----FCLIP 120
>gi|68533249 brain expressed, X-linked 1 [Homo sapiens]
Length = 125
Score = 77.8 bits (190), Expect = 2e-15
Identities = 49/113 (43%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 1 MANIHQENEEMEQPMQNGEE-DRPLGGGEGHQPAGNRRG-QARRLAPNFRWAIPNRQIND 58
M N +QENEE EQ GE PL GE P GNRR + R+ +RW + +R
Sbjct: 14 MENANQENEEKEQVANKGEPLALPLDAGEYCVPRGNRRRFRVRQPILQYRWDMMHRLGEP 73
Query: 59 GMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
++ME EE+R++ KLRE QL + LR + + HHDHHDEFCLMP
Sbjct: 74 QARMREENMERIGEEVRQLMEKLREKQLSHSLRAVSTD-PPHHDHHDEFCLMP 125
>gi|14249132 brain expressed X-linked 2 [Homo sapiens]
Length = 128
Score = 69.7 bits (169), Expect = 5e-13
Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 3 NIHQENEEMEQPMQNGEEDRPLG----GGEGHQPAGNRRG-QARRLAPNFRWAIPNRQIN 57
N++QEN+E ++ Q + PL E P GNRR + R+ +RW I +R
Sbjct: 16 NVNQENDEKDEKEQVANKGEPLALPLNVSEYCVPRGNRRRFRVRQPILQYRWDIMHRLGE 75
Query: 58 DGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
++ME EE+R++ KLRE QL + LR + + HHDHHDEFCLMP
Sbjct: 76 PQARMREENMERIGEEVRQLMEKLREKQLSHSLRAVSTD-PPHHDHHDEFCLMP 128
>gi|23397409 transcription elongation factor A (SII)-like 7 [Homo
sapiens]
Length = 100
Score = 41.2 bits (95), Expect = 2e-04
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 19 EEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDG-MGGDGDDMEIFMEEMREI 77
EE RP G E Q GN R + + F+ I R D M +GD+ME +EE+R +
Sbjct: 20 EEKRPYGEFERQQTEGNFRQRLLQSLEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGL 79
Query: 78 RRKLREL 84
R+K R L
Sbjct: 80 RKKFRAL 86
>gi|55749466 transcription elongation factor A (SII)-like 8 [Homo
sapiens]
Length = 117
Score = 35.8 bits (81), Expect = 0.008
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 6 QENEEMEQPMQNGEEDRPLGG--------------GEGHQPAGNRRGQARRLAPNFRWAI 51
+ENE Q M EEDRPL G + GN RG + F+
Sbjct: 6 EENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDT 65
Query: 52 PNRQIN-DGMGGDGDDMEIFMEEMREIRRK 80
P R ++ + M D++E EE+R +R K
Sbjct: 66 PVRHLDPEEMIRGVDELERLREEIRRVRNK 95
>gi|23503247 transcription elongation factor A (SII)-like 8 [Homo
sapiens]
Length = 117
Score = 35.8 bits (81), Expect = 0.008
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 6 QENEEMEQPMQNGEEDRPLGG--------------GEGHQPAGNRRGQARRLAPNFRWAI 51
+ENE Q M EEDRPL G + GN RG + F+
Sbjct: 6 EENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDT 65
Query: 52 PNRQIN-DGMGGDGDDMEIFMEEMREIRRK 80
P R ++ + M D++E EE+R +R K
Sbjct: 66 PVRHLDPEEMIRGVDELERLREEIRRVRNK 95
>gi|239757005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 22 RPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDG 64
RPLG H P G+ +AP R ++ + G GG G
Sbjct: 97 RPLGASAAHLPGSRAGGRYLGVAPGRRRSLLPSAVQPGRGGHG 139
>gi|239751519 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 22 RPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDG 64
RPLG H P G+ +AP R ++ + G GG G
Sbjct: 97 RPLGASAAHLPGSRAGGRYLGVAPGRRRSLLPSAVQPGRGGHG 139
>gi|239746026 PREDICTED: hypothetical protein XP_002344173 [Homo
sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 22 RPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDG 64
RPLG H P G+ +AP R ++ + G GG G
Sbjct: 97 RPLGASAAHLPGSRAGGRYLGVAPGRRRSLLPSAVQPGRGGHG 139
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 22 RPLGGGEGHQP--AGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIFMEEMR 75
RP GGG G P AG G LA + + + DG DGDD+ E R
Sbjct: 418 RPGGGGVGPGPGAAGPMLGGVVELAAASSFPLLEQFAGDGFHADGDDVLTVTETSR 473
>gi|154091020 leucine-rich repeats and calponin homology (CH) domain
containing 2 [Homo sapiens]
Length = 765
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 8 NEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDM 67
N + P+ + E DR G H P G L P ++ +RQ G G M
Sbjct: 587 NMSTQSPVSSEEYDRT--DGFSHSPFG--------LKPRSAFSRSSRQ-EYGAADPGFTM 635
Query: 68 EIFMEEMREIRRKLRELQ--LRNCLRILM 94
ME +RE R ++R+L+ L + L++++
Sbjct: 636 RRKMEHLREEREQIRQLRNNLESRLKVIL 664
>gi|55749424 transcription elongation factor A (SII)-like 1 [Homo
sapiens]
Length = 159
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 20 EDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQI-NDGMGGDGDDMEIFMEEMREIR 78
E P G G+ G+ + + R P FR I R + N+ M D+ +EEM+ +R
Sbjct: 86 EQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGRNLSNEEMIQAADE----LEEMKRVR 141
Query: 79 RKL 81
KL
Sbjct: 142 NKL 144
>gi|55749406 transcription elongation factor A (SII)-like 1 [Homo
sapiens]
Length = 159
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 20 EDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQI-NDGMGGDGDDMEIFMEEMREIR 78
E P G G+ G+ + + R P FR I R + N+ M D+ +EEM+ +R
Sbjct: 86 EQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGRNLSNEEMIQAADE----LEEMKRVR 141
Query: 79 RKL 81
KL
Sbjct: 142 NKL 144
>gi|55749397 transcription elongation factor A (SII)-like 1 [Homo
sapiens]
Length = 159
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 20 EDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQI-NDGMGGDGDDMEIFMEEMREIR 78
E P G G+ G+ + + R P FR I R + N+ M D+ +EEM+ +R
Sbjct: 86 EQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGRNLSNEEMIQAADE----LEEMKRVR 141
Query: 79 RKL 81
KL
Sbjct: 142 NKL 144
>gi|156142199 euchromatic histone-lysine N-methyltransferase 2
isoform b [Homo sapiens]
Length = 1176
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 6 QENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQ 55
+E EE E+ + EED G + RR ++ + W P+R+
Sbjct: 309 EEEEEEEEEEEEEEEDEESGNQSDRSGSSGRRKAKKKWRKDSPWVKPSRK 358
>gi|156142197 euchromatic histone-lysine N-methyltransferase 2
isoform a [Homo sapiens]
Length = 1210
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 6 QENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQ 55
+E EE E+ + EED G + RR ++ + W P+R+
Sbjct: 309 EEEEEEEEEEEEEEEDEESGNQSDRSGSSGRRKAKKKWRKDSPWVKPSRK 358
>gi|116875834 zinc finger protein 74 [Homo sapiens]
Length = 644
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 12 EQPMQNGEEDRPLGGGE--GHQPAGNRRGQAR--RLAPNFRWAIP 52
E+P Q +RPLGG + G Q +R QA AP W +P
Sbjct: 131 EEPAQEPIMERPLGGAQAWGRQAGALQRSQAAPWAPAPAMVWDVP 175
>gi|133922562 phosphoglucomutase 5 [Homo sapiens]
Length = 567
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 19 EEDRPLGGGEGHQPAGNRRGQARRLAPNF 47
E+ RP GGG +P G GQ R PNF
Sbjct: 17 EDQRPAGGGGLRRPTGLFEGQ-RNYLPNF 44
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 7 ENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDG 64
E+EE + G + GGE P + G+A R A A P Q+++ + +G
Sbjct: 369 EDEERRERSPEGPREEEAAGGEEESPDSSPHGEASRGA-----AEPEAQLSNHLAEEG 421
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 19 EEDRPLGGGEGHQ---PAGNRRGQARRLAPNFRWAIPNRQINDG 59
EE+ L GEG + P + RG+A R P RW + DG
Sbjct: 389 EEEEELEEGEGERAGVPGRSPRGRAHRRHPQERWRLEYLMELDG 432
>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
Length = 3075
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 10 EMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDG 64
++ P + + LGG HQ + N +RLAP + WA P + + + G
Sbjct: 532 DLISPRKIPSQQDALGGR--HQVSINNTAVMQRLAPKYYWAAPEAYLGNKLTAFG 584
>gi|239740726 PREDICTED: similar to HLA complex group 27 [Homo
sapiens]
Length = 133
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Query: 1 MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM 60
+ + Q+ EE P G RP+GG E H + L+PN W +I D
Sbjct: 31 LPGVTQQQEEFPDP---GIRGRPVGGAEAH--------FSTHLSPNPPWCFKRVKIPDRA 79
Query: 61 GG 62
G
Sbjct: 80 PG 81
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 7 ENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQAR 41
E EE E+ GE + G GEG + G G+ R
Sbjct: 1012 EGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEER 1046
>gi|224591401 phosphatidylinositol 4-kinase type 2 beta [Homo
sapiens]
Length = 481
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 15 MQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR-------QINDGMGGDGD 65
M++ E L +G P G+ L P WA P R ++ D G +G+
Sbjct: 1 MEDPSEPDRLASADGGSPEEEEDGEREPLLPRIAWAHPRRGAPGSAVRLLDAAGEEGE 58
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.139 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,063,242
Number of Sequences: 37866
Number of extensions: 243645
Number of successful extensions: 937
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 61
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.