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Search of human proteins with 76496487
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|76496487 small trans-membrane and glycosylated protein [Homo
sapiens]
(97 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|76496485 small trans-membrane and glycosylated protein [Homo ... 188 7e-49
gi|76496487 small trans-membrane and glycosylated protein [Homo ... 188 7e-49
gi|54607031 immunoglobulin superfamily, member 4D [Homo sapiens] 54 3e-08
gi|148664190 immunoglobulin superfamily, member 4D isoform 1 [Ho... 43 5e-05
gi|187608363 cell adhesion molecule 3 isoform 2 [Homo sapiens] 43 6e-05
gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens] 43 6e-05
gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Ho... 40 4e-04
gi|4504229 glycophorin C isoform 1 [Homo sapiens] 40 4e-04
gi|8051605 glycophorin C isoform 2 [Homo sapiens] 39 0.001
gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapi... 35 0.017
gi|11641231 ectodysplasin A receptor precursor [Homo sapiens] 33 0.049
gi|21686977 cell adhesion molecule 4 [Homo sapiens] 30 0.41
gi|226529863 T-cell immunoglobulin and mucin domain containing 4... 30 0.54
gi|226498466 T-cell immunoglobulin and mucin domain containing 4... 30 0.54
gi|4505463 contactin associated protein 1 precursor [Homo sapiens] 29 0.71
gi|5729993 protein tyrosine phosphatase, receptor type, E isofor... 28 1.2
gi|52694752 glycoprotein (transmembrane) nmb isoform a precursor... 28 1.6
gi|4505405 glycoprotein (transmembrane) nmb isoform b precursor ... 28 1.6
gi|26051223 sperm-associated cation channel 2 isoform 2 [Homo sa... 28 1.6
gi|16876443 sperm-associated cation channel 2 isoform 1 [Homo sa... 28 1.6
gi|239747184 PREDICTED: hypothetical protein XP_002343935 [Homo ... 27 3.5
gi|62420886 discoidin domain receptor family, member 2 precursor... 27 3.5
gi|62420884 discoidin domain receptor family, member 2 precursor... 27 3.5
gi|103471991 X Kell blood group precursor-related family, member... 27 3.5
gi|237512982 voltage-gated sodium channel type V alpha isoform f... 27 4.6
gi|237512980 voltage-gated sodium channel type V alpha isoform e... 27 4.6
gi|37622907 voltage-gated sodium channel type V alpha isoform a ... 27 4.6
gi|30089970 voltage-gated sodium channel type V alpha isoform b ... 27 4.6
gi|150417969 voltage-gated sodium channel type V alpha isoform d... 27 4.6
gi|150417967 voltage-gated sodium channel type V alpha isoform c... 27 4.6
>gi|76496485 small trans-membrane and glycosylated protein [Homo
sapiens]
Length = 97
Score = 188 bits (478), Expect = 7e-49
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLY 60
MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLY
Sbjct: 1 MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLY 60
Query: 61 KNKGSYVTYEPTEGEPSAIVQMESDLAKGSEKEEYFI 97
KNKGSYVTYEPTEGEPSAIVQMESDLAKGSEKEEYFI
Sbjct: 61 KNKGSYVTYEPTEGEPSAIVQMESDLAKGSEKEEYFI 97
>gi|76496487 small trans-membrane and glycosylated protein [Homo
sapiens]
Length = 97
Score = 188 bits (478), Expect = 7e-49
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLY 60
MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLY
Sbjct: 1 MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLY 60
Query: 61 KNKGSYVTYEPTEGEPSAIVQMESDLAKGSEKEEYFI 97
KNKGSYVTYEPTEGEPSAIVQMESDLAKGSEKEEYFI
Sbjct: 61 KNKGSYVTYEPTEGEPSAIVQMESDLAKGSEKEEYFI 97
>gi|54607031 immunoglobulin superfamily, member 4D [Homo sapiens]
Length = 437
Score = 53.5 bits (127), Expect = 3e-08
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 2 TSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYK 61
T++ T SP T+ I P AL+ ++G ALI ++ VV L + L+ YL +
Sbjct: 338 TTVAITTSPTTSATTSSIRDPN-ALAGQNGPDHALIGGIVAVVVFVTLCSIFLLGRYLAR 396
Query: 62 NKGSYVTYEPTEGE-----PSAIVQMESDLAKGSEKEEYFI 97
+KG+Y+T E E +AI+ E EK+EYFI
Sbjct: 397 HKGTYLTNEAKGAEDAPDADTAIINAEGSQVNAEEKKEYFI 437
>gi|148664190 immunoglobulin superfamily, member 4D isoform 1 [Homo
sapiens]
Length = 442
Score = 43.1 bits (100), Expect = 5e-05
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 6 TTPSPREELMTTPILQPTEALSPEDGA----STALIAVVITVVFLTLLSVVILIFFYLYK 61
TT + TT + T++ + E+G+ A+I V+ VV +L ++I++ Y +
Sbjct: 342 TTTTTTTTTTTTILTIITDSRAGEEGSIRAVDHAVIGGVVAVVVFAMLCLLIILGRYFAR 401
Query: 62 NKGSYVTYEPTEGE-----PSAIVQMESDLAKGSEKEEYFI 97
+KG+Y T+E + +AI+ E EK+EYFI
Sbjct: 402 HKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI 442
>gi|187608363 cell adhesion molecule 3 isoform 2 [Homo sapiens]
Length = 398
Score = 42.7 bits (99), Expect = 6e-05
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 27 SPEDGASTALIAVVITVV-FLTLLSVVILIFF--YLYKNKGSYVTYEPTEGE-----PSA 78
SP +S+ A++ +V F+ L +++LIF YL ++KG+Y+T+E + +A
Sbjct: 320 SPVPSSSSTYHAIIGGIVAFIVFLLLIMLIFLGHYLIRHKGTYLTHEAKGSDDAPDADTA 379
Query: 79 IVQMESDLAKGSEKEEYFI 97
I+ E + G +K+EYFI
Sbjct: 380 IINAEGGQSGGDDKKEYFI 398
>gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens]
Length = 432
Score = 42.7 bits (99), Expect = 6e-05
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 27 SPEDGASTALIAVVITVV-FLTLLSVVILIFF--YLYKNKGSYVTYEPTEGE-----PSA 78
SP +S+ A++ +V F+ L +++LIF YL ++KG+Y+T+E + +A
Sbjct: 354 SPVPSSSSTYHAIIGGIVAFIVFLLLIMLIFLGHYLIRHKGTYLTHEAKGSDDAPDADTA 413
Query: 79 IVQMESDLAKGSEKEEYFI 97
I+ E + G +K+EYFI
Sbjct: 414 IINAEGGQSGGDDKKEYFI 432
>gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Homo
sapiens]
Length = 414
Score = 40.0 bits (92), Expect = 4e-04
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 35 ALIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYEPTEGE-----PSAIVQMESDLAKG 89
A+I V+ VV +L ++I++ Y ++KG+Y T+E + +AI+ E
Sbjct: 347 AVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQNNS 406
Query: 90 SEKEEYFI 97
EK+EYFI
Sbjct: 407 EEKKEYFI 414
>gi|4504229 glycophorin C isoform 1 [Homo sapiens]
Length = 128
Score = 40.0 bits (92), Expect = 4e-04
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 16 TTPILQPTEALS--PEDGASTA--------LIAVVITVVFLTLLSVVILIFFYLYKNKGS 65
TT I +P +S P+ T+ +IA VI V + L+S++ ++ Y+Y++KG+
Sbjct: 31 TTTIAEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGT 90
Query: 66 YVTYEP--TEGEPSAIVQMESDL----AKGSEKEEYFI 97
Y T E TE SA ++ D A S ++EYFI
Sbjct: 91 YHTNEAKGTEFAESADAALQGDPALQDAGDSSRKEYFI 128
>gi|8051605 glycophorin C isoform 2 [Homo sapiens]
Length = 109
Score = 38.5 bits (88), Expect = 0.001
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 36 LIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYEP--TEGEPSAIVQMESDL----AKG 89
+IA VI V + L+S++ ++ Y+Y++KG+Y T E TE SA ++ D A
Sbjct: 42 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD 101
Query: 90 SEKEEYFI 97
S ++EYFI
Sbjct: 102 SSRKEYFI 109
>gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapiens]
Length = 1331
Score = 34.7 bits (78), Expect = 0.017
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 33 STALIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYEPTEGE 75
++A+I VI VV T+L ++ + Y++++KG+Y T E E
Sbjct: 1260 NSAIIGGVIAVVIFTILCTLVFLIRYMFRHKGTYHTNEAKGAE 1302
>gi|11641231 ectodysplasin A receptor precursor [Homo sapiens]
Length = 448
Score = 33.1 bits (74), Expect = 0.049
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 17 TPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYEPTEGEP 76
+P + LS + +TALI + ++ +F+ +++V++I FY+ K K S P
Sbjct: 169 SPFQHAHKELSGQGHLATALI-IAMSTIFIMAIAIVLIIMFYILKTKPS----APACCTS 223
Query: 77 SAIVQMESDLAKGSEKEE 94
+E+ ++K EK+E
Sbjct: 224 HPGKSVEAQVSKDEEKKE 241
>gi|21686977 cell adhesion molecule 4 [Homo sapiens]
Length = 388
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 19 ILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYEPT----EG 74
+ P + + A++ ++ ++ ++ V++ + + + KGSY+T+E + +G
Sbjct: 308 VYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEASGLDEQG 367
Query: 75 EPSAIVQMESDLAKGSEKEEYFI 97
E SD K KEE+FI
Sbjct: 368 EAREAFLNGSDGHK--RKEEFFI 388
>gi|226529863 T-cell immunoglobulin and mucin domain containing 4
isoform 1 [Homo sapiens]
Length = 378
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/85 (23%), Positives = 37/85 (43%)
Query: 6 TTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKGS 65
T+P+ ++ TTP PT ++ D + + + VF T + + L L +
Sbjct: 152 TSPTTTRQMTTTPAALPTTVVTTPDLTTGTPLQMTTIAVFTTANTCLSLTPSTLPEEATG 211
Query: 66 YVTYEPTEGEPSAIVQMESDLAKGS 90
+T EP++ P + E+ L S
Sbjct: 212 LLTPEPSKEGPILTAESETVLPSDS 236
>gi|226498466 T-cell immunoglobulin and mucin domain containing 4
isoform 2 [Homo sapiens]
Length = 350
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/85 (23%), Positives = 37/85 (43%)
Query: 6 TTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKGS 65
T+P+ ++ TTP PT ++ D + + + VF T + + L L +
Sbjct: 152 TSPTTTRQMTTTPAALPTTVVTTPDLTTGTPLQMTTIAVFTTANTCLSLTPSTLPEEATG 211
Query: 66 YVTYEPTEGEPSAIVQMESDLAKGS 90
+T EP++ P + E+ L S
Sbjct: 212 LLTPEPSKEGPILTAESETVLPSDS 236
>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
Length = 1384
Score = 29.3 bits (64), Expect = 0.71
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 29 EDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYEP 71
++G L+ ++ + L L+ +++L + ++ KGSY T EP
Sbjct: 1278 DEGWVAILLGFLVAFLLLGLVGMLVLFYLQNHRYKGSYHTNEP 1320
>gi|5729993 protein tyrosine phosphatase, receptor type, E isoform
1 precursor [Homo sapiens]
Length = 700
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 28 PEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYEPTEGEPSAIVQ 81
P+ GAS L+A ++ + L LL +++ +F+ ++ + V + P+ I++
Sbjct: 39 PDPGASQPLLAWLLLPLLLLLLVLLLAAYFFRFRKQRKAVVSTSDKKMPNGILE 92
>gi|52694752 glycoprotein (transmembrane) nmb isoform a precursor
[Homo sapiens]
Length = 572
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 16/80 (20%)
Query: 2 TSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYK 61
TSL T + L++ P P SP A++ALI+V +F+T++S+++ YK
Sbjct: 474 TSLALTST----LISVPDRDPA---SPLRMANSALISVGCLAIFVTVISLLV------YK 520
Query: 62 NKGSYVTYEPTEGEPSAIVQ 81
+ Y P E P +V+
Sbjct: 521 ---KHKEYNPIENSPGNVVR 537
>gi|4505405 glycoprotein (transmembrane) nmb isoform b precursor
[Homo sapiens]
Length = 560
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 16/80 (20%)
Query: 2 TSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYK 61
TSL T + L++ P P SP A++ALI+V +F+T++S+++ YK
Sbjct: 462 TSLALTST----LISVPDRDPA---SPLRMANSALISVGCLAIFVTVISLLV------YK 508
Query: 62 NKGSYVTYEPTEGEPSAIVQ 81
+ Y P E P +V+
Sbjct: 509 ---KHKEYNPIENSPGNVVR 525
>gi|26051223 sperm-associated cation channel 2 isoform 2 [Homo
sapiens]
Length = 530
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 36 LIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYEPT 72
++ +V + +T L +++LIFFY++ G YV E T
Sbjct: 231 ILVLVRALKSMTFLLMLLLIFFYIFAVTGVYVFSEYT 267
>gi|16876443 sperm-associated cation channel 2 isoform 1 [Homo
sapiens]
Length = 528
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 36 LIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYEPT 72
++ +V + +T L +++LIFFY++ G YV E T
Sbjct: 231 ILVLVRALKSMTFLLMLLLIFFYIFAVTGVYVFSEYT 267
>gi|239747184 PREDICTED: hypothetical protein XP_002343935 [Homo
sapiens]
Length = 260
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 35 ALIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYEPTEGEPSA 78
+LIAV + + +L ++L + YLY + V TE +P A
Sbjct: 177 SLIAVQLIISYLLATGFMLLFYQYLYPWQSGKVLPGRTENQPEA 220
>gi|62420886 discoidin domain receptor family, member 2 precursor
[Homo sapiens]
Length = 855
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 12 EELMTTPILQPT--EALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTY 69
E L T+P+ T L +D + LI ++ ++F+ L +VI+++ ++ +
Sbjct: 375 EALPTSPMAPTTYDPMLKVDDSNTRILIGCLVAIIFILLAIIVIILWRQFWQKMLEKASR 434
Query: 70 EPTEGEPSAIVQMESD 85
+ E + + + SD
Sbjct: 435 RMLDDEMTVSLSLPSD 450
>gi|62420884 discoidin domain receptor family, member 2 precursor
[Homo sapiens]
Length = 855
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 12 EELMTTPILQPT--EALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTY 69
E L T+P+ T L +D + LI ++ ++F+ L +VI+++ ++ +
Sbjct: 375 EALPTSPMAPTTYDPMLKVDDSNTRILIGCLVAIIFILLAIIVIILWRQFWQKMLEKASR 434
Query: 70 EPTEGEPSAIVQMESD 85
+ E + + + SD
Sbjct: 435 RMLDDEMTVSLSLPSD 450
>gi|103471991 X Kell blood group precursor-related family, member 3
[Homo sapiens]
Length = 459
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 35 ALIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYEPTEGEPSA 78
+LIAV + + +L ++L + YLY + V TE +P A
Sbjct: 376 SLIAVQLIISYLLATGFMLLFYQYLYPWQSGKVLPGRTENQPEA 419
>gi|237512982 voltage-gated sodium channel type V alpha isoform f
[Homo sapiens]
Length = 1962
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 10 PREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKG 64
P + L T L+P ALS +G + A+V + + + +V LIF+ ++ G
Sbjct: 1244 PIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMG 1298
>gi|237512980 voltage-gated sodium channel type V alpha isoform e
[Homo sapiens]
Length = 1983
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 10 PREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKG 64
P + L T L+P ALS +G + A+V + + + +V LIF+ ++ G
Sbjct: 1297 PIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMG 1351
>gi|37622907 voltage-gated sodium channel type V alpha isoform a [Homo
sapiens]
Length = 2016
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 10 PREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKG 64
P + L T L+P ALS +G + A+V + + + +V LIF+ ++ G
Sbjct: 1298 PIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMG 1352
>gi|30089970 voltage-gated sodium channel type V alpha isoform b [Homo
sapiens]
Length = 2015
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 10 PREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKG 64
P + L T L+P ALS +G + A+V + + + +V LIF+ ++ G
Sbjct: 1297 PIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMG 1351
>gi|150417969 voltage-gated sodium channel type V alpha isoform d
[Homo sapiens]
Length = 1998
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 10 PREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKG 64
P + L T L+P ALS +G + A+V + + + +V LIF+ ++ G
Sbjct: 1298 PIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMG 1352
>gi|150417967 voltage-gated sodium channel type V alpha isoform c
[Homo sapiens]
Length = 2016
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 10 PREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKG 64
P + L T L+P ALS +G + A+V + + + +V LIF+ ++ G
Sbjct: 1298 PIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMG 1352
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,761,004
Number of Sequences: 37866
Number of extensions: 137182
Number of successful extensions: 472
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 50
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.