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Search of human proteins with 73486651
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|73486651 membrane-spanning 4-domains, subfamily A, member 3
isoform c [Homo sapiens]
(91 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|73486651 membrane-spanning 4-domains, subfamily A, member 3 i... 182 7e-47
gi|73486649 membrane-spanning 4-domains, subfamily A, member 3 i... 182 7e-47
gi|73486653 membrane-spanning 4-domains, subfamily A, member 3 i... 182 7e-47
gi|239755562 PREDICTED: membrane-spanning 4-domains, subfamily A... 42 1e-04
gi|239750062 PREDICTED: membrane-spanning 4-domains, subfamily A... 42 1e-04
gi|239744375 PREDICTED: membrane-spanning 4-domains, subfamily A... 41 2e-04
gi|20070328 membrane-spanning 4-domains, subfamily A, member 4 i... 40 5e-04
gi|23110995 membrane-spanning 4-domains, subfamily A, member 4 i... 40 5e-04
gi|23238234 membrane-spanning 4-domains, subfamily A, member 6A ... 30 0.42
gi|23238238 membrane-spanning 4-domains, subfamily A, member 6A ... 30 0.42
gi|13899295 membrane-spanning 4-domains, subfamily A, member 8B ... 28 1.2
gi|14780900 olfactory receptor, family 2, subfamily B, member 2 ... 28 1.2
gi|62988276 mitochondrial RNase P protein 3 [Homo sapiens] 28 1.6
gi|169202868 PREDICTED: similar to membrane-spanning 4-domains, ... 27 3.6
gi|169203526 PREDICTED: similar to membrane-spanning 4-domains, ... 27 3.6
gi|169202217 PREDICTED: similar to membrane-spanning 4-domains, ... 27 3.6
gi|4503677 membrane-spanning 4-domains, subfamily A, member 2 is... 26 6.1
gi|5729776 CD300C antigen [Homo sapiens] 26 6.1
>gi|73486651 membrane-spanning 4-domains, subfamily A, member 3
isoform c [Homo sapiens]
Length = 91
Score = 182 bits (461), Expect = 7e-47
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLL 60
MNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLL
Sbjct: 1 MNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLL 60
Query: 61 ELCVTISTIAMWCNANCCNSREEISSPPNSV 91
ELCVTISTIAMWCNANCCNSREEISSPPNSV
Sbjct: 61 ELCVTISTIAMWCNANCCNSREEISSPPNSV 91
>gi|73486649 membrane-spanning 4-domains, subfamily A, member 3
isoform a [Homo sapiens]
Length = 214
Score = 182 bits (461), Expect = 7e-47
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLL 60
MNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLL
Sbjct: 124 MNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLL 183
Query: 61 ELCVTISTIAMWCNANCCNSREEISSPPNSV 91
ELCVTISTIAMWCNANCCNSREEISSPPNSV
Sbjct: 184 ELCVTISTIAMWCNANCCNSREEISSPPNSV 214
>gi|73486653 membrane-spanning 4-domains, subfamily A, member 3
isoform b [Homo sapiens]
Length = 168
Score = 182 bits (461), Expect = 7e-47
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLL 60
MNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLL
Sbjct: 78 MNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLL 137
Query: 61 ELCVTISTIAMWCNANCCNSREEISSPPNSV 91
ELCVTISTIAMWCNANCCNSREEISSPPNSV
Sbjct: 138 ELCVTISTIAMWCNANCCNSREEISSPPNSV 168
>gi|239755562 PREDICTED: membrane-spanning 4-domains, subfamily A,
member 4E isoform 1 [Homo sapiens]
Length = 243
Score = 42.0 bits (97), Expect = 1e-04
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 2 NIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLLE 61
NI S+ +A+ G ++++ C+ S + C SI G ++L+L++LE
Sbjct: 141 NITSSVLAISGILINAISLTFYSFRYHYCNHDQLSSN-CYMTMSILMGTDGMVLLLSVLE 199
Query: 62 LCVTISTIAMWCNANCCNSREEISSPPNS 90
C+ +S A C CC+ E + P++
Sbjct: 200 FCIAVSLSAFGCKVLCCSPSEVVLITPSN 228
>gi|239750062 PREDICTED: membrane-spanning 4-domains, subfamily A,
member 4E isoform 3 [Homo sapiens]
Length = 243
Score = 42.0 bits (97), Expect = 1e-04
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 2 NIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLLE 61
NI S+ +A+ G ++++ C+ S + C SI G ++L+L++LE
Sbjct: 141 NITSSVLAISGILINAISLTFYSFRYHYCNHDQLSSN-CYMTMSILMGTDGMVLLLSVLE 199
Query: 62 LCVTISTIAMWCNANCCNSREEISSPPNS 90
C+ +S A C CC+ E + P++
Sbjct: 200 FCIAVSLSAFGCKVLCCSPSEVVLITPSN 228
>gi|239744375 PREDICTED: membrane-spanning 4-domains, subfamily A,
member 4E isoform 3 [Homo sapiens]
Length = 243
Score = 40.8 bits (94), Expect = 2e-04
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 2 NIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLLE 61
NI S+ +A+ G ++++ C+ S + C SI G ++L+L++LE
Sbjct: 141 NITSSVLAISGILINAISLTFYSFRYHYCNHDQLSSN-CYMTMSILMGTDGMVLLLSVLE 199
Query: 62 LCVTISTIAMWCNANCCNSREEISSPPNS 90
C+ ++ A C CC+ E + P++
Sbjct: 200 FCIAVALSAFGCKVLCCSPSEVVLITPSN 228
>gi|20070328 membrane-spanning 4-domains, subfamily A, member 4
isoform a [Homo sapiens]
Length = 220
Score = 39.7 bits (91), Expect = 5e-04
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLL 60
MNI S+ +A G + ++A C+ S + C+ SI G+ ++L+L++L
Sbjct: 117 MNITSSVLAASGILINTFSLAFYSFHHPYCNYYGNSNN-CHGTMSILMGLDGMVLLLSVL 175
Query: 61 ELCVTISTIAMWCNANCC 78
E C+ +S A C CC
Sbjct: 176 EFCIAVSLSAFGCKVLCC 193
>gi|23110995 membrane-spanning 4-domains, subfamily A, member 4
isoform b [Homo sapiens]
Length = 239
Score = 39.7 bits (91), Expect = 5e-04
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLL 60
MNI S+ +A G + ++A C+ S + C+ SI G+ ++L+L++L
Sbjct: 136 MNITSSVLAASGILINTFSLAFYSFHHPYCNYYGNSNN-CHGTMSILMGLDGMVLLLSVL 194
Query: 61 ELCVTISTIAMWCNANCC 78
E C+ +S A C CC
Sbjct: 195 EFCIAVSLSAFGCKVLCC 212
>gi|23238234 membrane-spanning 4-domains, subfamily A, member 6A
isoform 2 [Homo sapiens]
Length = 225
Score = 30.0 bits (66), Expect = 0.42
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 18/87 (20%)
Query: 2 NIASATIALVGTAFLSLNIAVNIQSLRSC-----------------HSSSESPDLCNYMG 44
+I SA ALVG LS+ A + C H S + D
Sbjct: 121 SILSALSALVGFIILSVKQATLNPASLQCELDKNNIPTRSYVSYFYHDSLYTTDCYTAKA 180
Query: 45 SISNGMVSLLLILTLLELCVTISTIAM 71
S++ G +SL+LI TLLE C+ + T +
Sbjct: 181 SLA-GTLSLMLICTLLEFCLAVLTAVL 206
>gi|23238238 membrane-spanning 4-domains, subfamily A, member 6A
isoform 1 [Homo sapiens]
Length = 248
Score = 30.0 bits (66), Expect = 0.42
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 18/87 (20%)
Query: 2 NIASATIALVGTAFLSLNIAVNIQSLRSC-----------------HSSSESPDLCNYMG 44
+I SA ALVG LS+ A + C H S + D
Sbjct: 121 SILSALSALVGFIILSVKQATLNPASLQCELDKNNIPTRSYVSYFYHDSLYTTDCYTAKA 180
Query: 45 SISNGMVSLLLILTLLELCVTISTIAM 71
S++ G +SL+LI TLLE C+ + T +
Sbjct: 181 SLA-GTLSLMLICTLLEFCLAVLTAVL 206
>gi|13899295 membrane-spanning 4-domains, subfamily A, member 8B
[Homo sapiens]
Length = 250
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 1 MNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMV--SLLLILT 58
+NI SA + VG ++++ PD Y ++ GM +LL+
Sbjct: 141 LNIVSAICSAVGVILFITDLSIP--------HPYAYPDYYPYAWGVNPGMAISGVLLVFC 192
Query: 59 LLELCVTISTIAMWCNANCCNSREEISSPPN 89
LLE + ++ C CC S PN
Sbjct: 193 LLEFGIACASSHFGCQLVCCQSSNVSVIYPN 223
>gi|14780900 olfactory receptor, family 2, subfamily B, member 2
[Homo sapiens]
Length = 357
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 50 MVSLLLILTLLELCVTISTIAMWCNANCCNSREEIS 85
M L L+LL+LC T ST+ N CN+R+ IS
Sbjct: 59 MYFFLSNLSLLDLCYTTSTVPQML-VNICNTRKVIS 93
>gi|62988276 mitochondrial RNase P protein 3 [Homo sapiens]
Length = 583
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 24 IQSLRSCHSSSE-SPDLCNYMGSISNGMVSLLLILTLLELCV 64
I + CHSS + + L ++ + +NG+VS L++ L LCV
Sbjct: 145 ISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVKYLYLCV 186
>gi|169202868 PREDICTED: similar to membrane-spanning 4-domains,
subfamily A, member 8B [Homo sapiens]
Length = 391
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 42 YMGSISNGMVSLLLILTLLELCVTISTIAMWCNANCCNSREEISSPP 88
Y+ + S + LL LLE +T C A CC E ++ P
Sbjct: 237 YVTTYSKAVSGGLLPFALLEFILTCVVSHFGCQATCCRQFENVAVIP 283
>gi|169203526 PREDICTED: similar to membrane-spanning 4-domains,
subfamily A, member 8B [Homo sapiens]
Length = 391
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 42 YMGSISNGMVSLLLILTLLELCVTISTIAMWCNANCCNSREEISSPP 88
Y+ + S + LL LLE +T C A CC E ++ P
Sbjct: 237 YVTTYSKAVSGGLLPFALLEFILTCVVSHFGCQATCCRQFENVAVIP 283
>gi|169202217 PREDICTED: similar to membrane-spanning 4-domains,
subfamily A, member 8B [Homo sapiens]
Length = 391
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 42 YMGSISNGMVSLLLILTLLELCVTISTIAMWCNANCCNSREEISSPP 88
Y+ + S + LL LLE +T C A CC E ++ P
Sbjct: 237 YVTTYSKAVSGGLLPFALLEFILTCVVSHFGCQATCCRQFENVAVIP 283
>gi|4503677 membrane-spanning 4-domains, subfamily A, member 2
isoform 1 [Homo sapiens]
Length = 244
Score = 26.2 bits (56), Expect = 6.1
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 2 NIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLLE 61
N AS+ G L +N+ ++ + HS + + +M S S +V ++L LT+L
Sbjct: 134 NTASSIAGGTGITILIINLKKSLAYIH-IHSCQKFFETKCFMASFSTEIVVMMLFLTILG 192
Query: 62 LCVTIS 67
L +S
Sbjct: 193 LGSAVS 198
>gi|5729776 CD300C antigen [Homo sapiens]
Length = 224
Score = 26.2 bits (56), Expect = 6.1
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 35 ESPDLCNYMGSISNGMVSLLLILTLLELCVTISTIAMWCNANCCNSREEISSP 87
+SP+ + GS+ + + LLL+L L L +++ +W N +SR + P
Sbjct: 167 DSPEPSPHPGSLFSNVRFLLLVLLELPLLLSMLGAVLWVNRPQRSSRSRQNWP 219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.128 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,979,563
Number of Sequences: 37866
Number of extensions: 88852
Number of successful extensions: 278
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 18
length of query: 91
length of database: 18,247,518
effective HSP length: 62
effective length of query: 29
effective length of database: 15,899,826
effective search space: 461094954
effective search space used: 461094954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.