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Search of human proteins with 6006001
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens]
(226 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens] 464 e-131
gi|33186887 glutathione peroxidase 6 [Homo sapiens] 330 5e-91
gi|4557629 glutathione peroxidase 5 isoform 1 precursor [Homo sa... 323 7e-89
gi|41406084 glutathione peroxidase 1 isoform 1 [Homo sapiens] 162 2e-40
gi|32967607 glutathione peroxidase 2 [Homo sapiens] 146 1e-35
gi|6715602 glutathione peroxidase 5 isoform 2 precursor [Homo sa... 92 3e-19
gi|75709200 glutathione peroxidase 4 isoform A precursor [Homo s... 84 7e-17
gi|90903240 glutathione peroxidase 4 isoform C precursor [Homo s... 82 4e-16
gi|15618997 glutathione peroxidase 7 [Homo sapiens] 82 5e-16
gi|90903238 glutathione peroxidase 4 isoform B precursor [Homo s... 77 9e-15
gi|192455698 glutathione peroxidase 8 [Homo sapiens] 74 1e-13
gi|41406082 glutathione peroxidase 1 isoform 2 [Homo sapiens] 63 2e-10
gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [H... 30 1.7
gi|28559063 DNA cytosine-5 methyltransferase 3 beta isoform 3 [H... 30 1.7
gi|28559061 DNA cytosine-5 methyltransferase 3 beta isoform 2 [H... 30 1.7
gi|5901940 DNA cytosine-5 methyltransferase 3 beta isoform 1 [Ho... 30 1.7
gi|40018629 hypothetical protein LOC23325 [Homo sapiens] 29 2.9
gi|116292750 lipoprotein Lp(a) precursor [Homo sapiens] 29 3.7
gi|133922562 phosphoglucomutase 5 [Homo sapiens] 29 3.7
gi|27777671 keratinocyte associated protein 3 [Homo sapiens] 28 6.4
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s... 28 8.3
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa... 28 8.3
>gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens]
Length = 226
Score = 464 bits (1195), Expect = e-131
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYA 60
MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYA
Sbjct: 1 MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYA 60
Query: 61 GKYVLFVNVASYUGLTGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK 120
GKYVLFVNVASY GLTGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK
Sbjct: 61 GKYVLFVNVASYUGLTGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK 120
Query: 121 YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIR 180
YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIR
Sbjct: 121 YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIR 180
Query: 181 WNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK 226
WNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK
Sbjct: 181 WNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK 226
>gi|33186887 glutathione peroxidase 6 [Homo sapiens]
Length = 221
Score = 330 bits (847), Expect = 5e-91
Identities = 154/217 (70%), Positives = 181/217 (83%)
Query: 1 MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYA 60
M + QASCL+ L GF Q+ + K+DC+ G++GTIYEYGALT++GEEYI FKQ+A
Sbjct: 1 MFQQFQASCLVLFFLVGFAQQTLKPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQFA 60
Query: 61 GKYVLFVNVASYUGLTGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK 120
GK+VLFVNVA+Y GL QY ELNALQEEL FG+++L FPCNQFGKQEPG NSEIL LK
Sbjct: 61 GKHVLFVNVAAYUGLAAQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLK 120
Query: 121 YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIR 180
YV PG GFVP+FQLFEKGDVNGEKEQK +TFLKNSCPPTS+LLG+S +LFWEPMKVHDIR
Sbjct: 121 YVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIR 180
Query: 181 WNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRR 217
WNFEKFLVGPDG+P+M W H+ VS VK DIL Y+++
Sbjct: 181 WNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217
>gi|4557629 glutathione peroxidase 5 isoform 1 precursor [Homo
sapiens]
Length = 221
Score = 323 bits (828), Expect = 7e-89
Identities = 152/217 (70%), Positives = 178/217 (82%)
Query: 1 MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYA 60
M L+ LL LLLA FV S QEK KMDCH GTIY+Y A+ ++ EY+ FKQY
Sbjct: 1 MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV 60
Query: 61 GKYVLFVNVASYUGLTGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK 120
GK++LFVNVA+Y GLT QY ELNALQEEL P+GLV+LGFPCNQFGKQEPG+N EILP LK
Sbjct: 61 GKHILFVNVATYCGLTAQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLK 120
Query: 121 YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIR 180
YVRPGGGFVP+FQLFEKGDVNGEKEQK ++FLK+SCP SE+LGT + W+P+KVHDIR
Sbjct: 121 YVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIR 180
Query: 181 WNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRR 217
WNFEKFLVGPDGIP+MRW HR TVS+VK DIL+Y+++
Sbjct: 181 WNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQ 217
>gi|41406084 glutathione peroxidase 1 isoform 1 [Homo sapiens]
Length = 203
Score = 162 bits (410), Expect = 2e-40
Identities = 83/178 (46%), Positives = 111/178 (62%), Gaps = 5/178 (2%)
Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQ-YIELNALQEELAPFGLVIL 97
++Y + A + G E + GK +L NVAS G T + Y ++N LQ L P GLV+L
Sbjct: 15 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVL 74
Query: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157
GFPCNQFG QE +N EIL +LKYVRPGGGF PNF LFEK +VNG + FL+ + P
Sbjct: 75 GFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALP 134
Query: 158 PTSE----LLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211
S+ L+ + W P+ +D+ WNFEKFLVGPDG+P+ R+ R +++ DI
Sbjct: 135 APSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDI 192
>gi|32967607 glutathione peroxidase 2 [Homo sapiens]
Length = 190
Score = 146 bits (369), Expect = 1e-35
Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 7/181 (3%)
Query: 36 ISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQ-YIELNALQEELAPFGL 94
I+ + Y+ A+++DGE+ + F + G+ VL NVAS G T + + +LN LQ P L
Sbjct: 4 IAKSFYDLSAISLDGEK-VDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRL 61
Query: 95 VILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKN 154
V+LGFPCNQFG QE +N EIL +LKYVRPGGG+ P F L +K +VNG+ E + +LK+
Sbjct: 62 VVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKD 121
Query: 155 SCP----PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMD 210
P L+ + W P++ D+ WNFEKFL+GP+G P R+ N++ D
Sbjct: 122 KLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPD 181
Query: 211 I 211
I
Sbjct: 182 I 182
>gi|6715602 glutathione peroxidase 5 isoform 2 precursor [Homo
sapiens]
Length = 100
Score = 92.4 bits (228), Expect = 3e-19
Identities = 47/89 (52%), Positives = 59/89 (66%)
Query: 1 MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYA 60
M L+ LL LLLA FV S QEK KMDCH GTIY+Y A+ ++ EY+ FKQY
Sbjct: 1 MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV 60
Query: 61 GKYVLFVNVASYUGLTGQYIELNALQEEL 89
GK++LFVNVA+Y GLT QY ++ E+L
Sbjct: 61 GKHILFVNVATYCGLTAQYPGMSVQGEDL 89
>gi|75709200 glutathione peroxidase 4 isoform A precursor [Homo
sapiens]
Length = 197
Score = 84.3 bits (207), Expect = 7e-17
Identities = 64/199 (32%), Positives = 93/199 (46%), Gaps = 25/199 (12%)
Query: 1 MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYA 60
+ RLL+ + L L A ++ + + C + +++E+ A IDG + +Y
Sbjct: 6 LCRLLKPALLCGALAAPGLAGTMCASRDDWRC----ARSMHEFSAKDIDGH-MVNLDKYR 60
Query: 61 GKYVLFVNVASYUGLTG-QYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTL 119
G + NVAS G T Y +L L A GL IL FPCNQFGKQEPG N EI
Sbjct: 61 GFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEF- 119
Query: 120 KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDI 179
G+ F +F K VNG+ + ++K P +LG + I
Sbjct: 120 -----AAGYNVKFDMFSKICVNGDDAHPLWKWMKIQ-PKGKGILGNA------------I 161
Query: 180 RWNFEKFLVGPDGIPIMRW 198
+WNF KFL+ +G + R+
Sbjct: 162 KWNFTKFLIDKNGCVVKRY 180
>gi|90903240 glutathione peroxidase 4 isoform C precursor [Homo
sapiens]
Length = 234
Score = 82.0 bits (201), Expect = 4e-16
Identities = 57/161 (35%), Positives = 78/161 (48%), Gaps = 21/161 (13%)
Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTG-QYIELNALQEELAPFGLVIL 97
+++E+ A IDG + +Y G + NVAS G T Y +L L A GL IL
Sbjct: 77 SMHEFSAKDIDGH-MVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 135
Query: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157
FPCNQFGKQEPG N EI G+ F +F K VNG+ + ++K P
Sbjct: 136 AFPCNQFGKQEPGSNEEIKEF------AAGYNVKFDMFSKICVNGDDAHPLWKWMKIQ-P 188
Query: 158 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRW 198
+LG + I+WNF KFL+ +G + R+
Sbjct: 189 KGKGILGNA------------IKWNFTKFLIDKNGCVVKRY 217
>gi|15618997 glutathione peroxidase 7 [Homo sapiens]
Length = 187
Score = 81.6 bits (200), Expect = 5e-16
Identities = 59/178 (33%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 41 YEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQ-YIELNALQEELAPFGLVILGF 99
Y++ A+ I G+ + ++Y G L VNVAS G T Q Y L LQ +L P +L F
Sbjct: 26 YDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 84
Query: 100 PCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPT 159
PCNQFG+QEP N EI + + +F +F K V G + +L
Sbjct: 85 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLAQ----- 134
Query: 160 SELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRR 217
TS + EP WNF K+LV PDG + W +V V+ I + +R+
Sbjct: 135 -----TSGK---EP------TWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRK 178
>gi|90903238 glutathione peroxidase 4 isoform B precursor [Homo
sapiens]
Length = 227
Score = 77.4 bits (189), Expect = 9e-15
Identities = 61/187 (32%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 1 MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYA 60
+ RLL+ + L L A ++ + + C + +++E+ A IDG + +Y
Sbjct: 6 LCRLLKPALLCGALAAPGLAGTMCASRDDWRC----ARSMHEFSAKDIDGH-MVNLDKYR 60
Query: 61 GKYVLFVNVASYUGLTG-QYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTL 119
G + NVAS G T Y +L L A GL IL FPCNQFGKQEPG N EI
Sbjct: 61 GFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEF- 119
Query: 120 KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDI 179
G+ F +F K VNG+ + ++K P +LG + I
Sbjct: 120 -----AAGYNVKFDMFSKICVNGDDAHPLWKWMKIQ-PKGKGILGNA------------I 161
Query: 180 RWNFEKF 186
+WNF KF
Sbjct: 162 KWNFTKF 168
>gi|192455698 glutathione peroxidase 8 [Homo sapiens]
Length = 209
Score = 73.9 bits (180), Expect = 1e-13
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 25/165 (15%)
Query: 54 IPFKQYAGKYVLFVNVASYUGLTGQ-YIELNALQEELAPFGLVILGFPCNQFGKQEPGEN 112
+ ++Y GK L VNVAS LT + Y+ L L +E P +L FPCNQFG+ EP +
Sbjct: 60 VSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPS 119
Query: 113 SEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWE 172
E+ + R G F +F K + G + + + FL +S E
Sbjct: 120 KEV---ESFARKNYGV--TFPIFHKIKILGSEGEPAFRFLVDSSKK-------------E 161
Query: 173 PMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRR 217
P RWNF K+LV P+G + W + ++ DI + +R+
Sbjct: 162 P------RWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQ 200
>gi|41406082 glutathione peroxidase 1 isoform 2 [Homo sapiens]
Length = 98
Score = 62.8 bits (151), Expect = 2e-10
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQ-YIELNALQEELAPFGLVIL 97
++Y + A + G E + GK +L NVAS G T + Y ++N LQ L P GLV+L
Sbjct: 15 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVL 74
Query: 98 GFPCNQFGKQ 107
GFPCNQFG Q
Sbjct: 75 GFPCNQFGHQ 84
>gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [Homo
sapiens]
Length = 845
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 87 EELAPFGLVILGFPCNQFGKQEPGENS----------EILPTLKYVRP-GGGFVPNFQLF 135
EE PF LVI G PCN P E L Y RP G P F +F
Sbjct: 629 EEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLNYSRPKEGDDRPFFWMF 688
Query: 136 E 136
E
Sbjct: 689 E 689
>gi|28559063 DNA cytosine-5 methyltransferase 3 beta isoform 3 [Homo
sapiens]
Length = 770
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 87 EELAPFGLVILGFPCNQFGKQEPGENS----------EILPTLKYVRP-GGGFVPNFQLF 135
EE PF LVI G PCN P E L Y RP G P F +F
Sbjct: 617 EEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLNYSRPKEGDDRPFFWMF 676
Query: 136 E 136
E
Sbjct: 677 E 677
>gi|28559061 DNA cytosine-5 methyltransferase 3 beta isoform 2 [Homo
sapiens]
Length = 833
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 87 EELAPFGLVILGFPCNQFGKQEPGENS----------EILPTLKYVRP-GGGFVPNFQLF 135
EE PF LVI G PCN P E L Y RP G P F +F
Sbjct: 617 EEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLNYSRPKEGDDRPFFWMF 676
Query: 136 E 136
E
Sbjct: 677 E 677
>gi|5901940 DNA cytosine-5 methyltransferase 3 beta isoform 1 [Homo
sapiens]
Length = 853
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 87 EELAPFGLVILGFPCNQFGKQEPGENS----------EILPTLKYVRP-GGGFVPNFQLF 135
EE PF LVI G PCN P E L Y RP G P F +F
Sbjct: 637 EEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLNYSRPKEGDDRPFFWMF 696
Query: 136 E 136
E
Sbjct: 697 E 697
>gi|40018629 hypothetical protein LOC23325 [Homo sapiens]
Length = 1173
Score = 29.3 bits (64), Expect = 2.9
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 110 GENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRL 169
GE SEI KYV G FV +FQ+F D +KFY L + C + T++ +
Sbjct: 304 GEPSEIDQRDKYVGICGLFVLHFQIFRTID------KKFYKSLLDICKKVPAITLTAN-I 356
Query: 170 FWEP 173
W P
Sbjct: 357 IWFP 360
>gi|116292750 lipoprotein Lp(a) precursor [Homo sapiens]
Length = 2040
Score = 28.9 bits (63), Expect = 3.7
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 96 ILGFPCNQFGKQEPGENSEILP-TLKYVRPGGGFVPNFQLFEKGDVNG 142
+ G PC ++ QEP +S +P T K+ G N+ GD+NG
Sbjct: 1736 VTGTPCQEWAAQEPHRHSTFIPGTNKW----AGLEKNYCRNPDGDING 1779
>gi|133922562 phosphoglucomutase 5 [Homo sapiens]
Length = 567
Score = 28.9 bits (63), Expect = 3.7
Identities = 19/68 (27%), Positives = 25/68 (36%)
Query: 61 GKYVLFVNVASYUGLTGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK 120
G L + + + G+ G Y+ E AP I P FG Q P N TL
Sbjct: 219 GPSQLKIRIDAMHGVMGPYVRKVLCDELGAPANSAINCVPLEDFGGQHPDPNLTYATTLL 278
Query: 121 YVRPGGGF 128
GG +
Sbjct: 279 EAMKGGEY 286
>gi|27777671 keratinocyte associated protein 3 [Homo sapiens]
Length = 240
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 4 LLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGI 36
LL +C L LLLA ++ + G + DCH G+
Sbjct: 104 LLSVACSLGLLLAVSLTVANGGRRLIADCHPGL 136
>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
sapiens]
Length = 3118
Score = 27.7 bits (60), Expect = 8.3
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 152 LKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVG-PDGIPIMRWHHRTTVSNVKMD 210
L+N P S LG+ D P K++D +W+ K + +GI + T+S K D
Sbjct: 2814 LRNGLPYFSYDLGSGDTHTMIPTKINDGQWHKIKIMRSKQEGILYVDGASNRTISPKKAD 2873
Query: 211 IL 212
IL
Sbjct: 2874 IL 2875
>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
sapiens]
Length = 3122
Score = 27.7 bits (60), Expect = 8.3
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 152 LKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVG-PDGIPIMRWHHRTTVSNVKMD 210
L+N P S LG+ D P K++D +W+ K + +GI + T+S K D
Sbjct: 2818 LRNGLPYFSYDLGSGDTHTMIPTKINDGQWHKIKIMRSKQEGILYVDGASNRTISPKKAD 2877
Query: 211 IL 212
IL
Sbjct: 2878 IL 2879
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,839,205
Number of Sequences: 37866
Number of extensions: 410902
Number of successful extensions: 675
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 22
length of query: 226
length of database: 18,247,518
effective HSP length: 99
effective length of query: 127
effective length of database: 14,498,784
effective search space: 1841345568
effective search space used: 1841345568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.