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Search of human proteins with 5902064
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5902064 rabphilin 3A-like (without C2 domains) [Homo
sapiens]
(315 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5902064 rabphilin 3A-like (without C2 domains) [Homo sapiens] 655 0.0
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 216 2e-56
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 213 1e-55
gi|193804862 synaptotagmin-like 4 [Homo sapiens] 69 5e-12
gi|193804860 synaptotagmin-like 4 [Homo sapiens] 69 5e-12
gi|154354983 regulating synaptic membrane exocytosis 2 isoform a... 68 1e-11
gi|110227631 synaptotagmin-like 3 [Homo sapiens] 63 4e-10
gi|41054864 regulating synaptic membrane exocytosis 1 [Homo sapi... 56 5e-08
gi|254039650 synaptotagmin-like 5 isoform 1 [Homo sapiens] 53 3e-07
gi|254039648 synaptotagmin-like 5 isoform 2 [Homo sapiens] 53 3e-07
gi|20270305 synaptotagmin-like 5 isoform 1 [Homo sapiens] 53 3e-07
gi|59853352 myosin VIIA and Rab interacting protein [Homo sapiens] 52 5e-07
gi|55750053 atrophin-1 [Homo sapiens] 41 0.001
gi|55750041 atrophin-1 [Homo sapiens] 41 0.001
gi|157168349 F-box and leucine-rich repeat protein 19 [Homo sapi... 40 0.003
gi|109826351 melanophilin isoform 2 [Homo sapiens] 40 0.004
gi|13129108 melanophilin isoform 1 [Homo sapiens] 40 0.004
gi|51173722 bromodomain and PHD finger-containing protein 1 isof... 39 0.005
gi|51173720 bromodomain and PHD finger-containing protein 1 isof... 39 0.005
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|91208420 bassoon protein [Homo sapiens] 39 0.006
gi|33286446 opioid growth factor receptor [Homo sapiens] 37 0.023
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 37 0.023
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 36 0.039
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 36 0.039
gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like ... 36 0.039
gi|113428063 PREDICTED: similar to methyl-CpG binding domain pro... 36 0.039
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 36 0.039
gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo sa... 36 0.039
gi|169217724 PREDICTED: similar to methyl-CpG binding domain pro... 36 0.051
>gi|5902064 rabphilin 3A-like (without C2 domains) [Homo sapiens]
Length = 315
Score = 655 bits (1690), Expect = 0.0
Identities = 315/315 (100%), Positives = 315/315 (100%)
Query: 1 MADTIFGSGNDQWVCPNDRQLALRAKLQTGWSVHTYQTEKQRRKQHLSPAEVEAILQVIQ 60
MADTIFGSGNDQWVCPNDRQLALRAKLQTGWSVHTYQTEKQRRKQHLSPAEVEAILQVIQ
Sbjct: 1 MADTIFGSGNDQWVCPNDRQLALRAKLQTGWSVHTYQTEKQRRKQHLSPAEVEAILQVIQ 60
Query: 61 RAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRKKVC 120
RAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRKKVC
Sbjct: 61 RAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRKKVC 120
Query: 121 TKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGLPKYILPLKTPGRADDPHFRPL 180
TKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGLPKYILPLKTPGRADDPHFRPL
Sbjct: 121 TKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGLPKYILPLKTPGRADDPHFRPL 180
Query: 181 PTEPAEREPRSSETSRIYTWARGRVVSSDSDSDSDLSSSSLEDRLPSTGVRDRKGDKPWK 240
PTEPAEREPRSSETSRIYTWARGRVVSSDSDSDSDLSSSSLEDRLPSTGVRDRKGDKPWK
Sbjct: 181 PTEPAEREPRSSETSRIYTWARGRVVSSDSDSDSDLSSSSLEDRLPSTGVRDRKGDKPWK 240
Query: 241 ESGGSVEAPRMGFTHPPGHLSGCQSSLASGETGTGSADPPGGPRPGLTRRAPVKDTPGRA 300
ESGGSVEAPRMGFTHPPGHLSGCQSSLASGETGTGSADPPGGPRPGLTRRAPVKDTPGRA
Sbjct: 241 ESGGSVEAPRMGFTHPPGHLSGCQSSLASGETGTGSADPPGGPRPGLTRRAPVKDTPGRA 300
Query: 301 PAADAAPAGPSSCLG 315
PAADAAPAGPSSCLG
Sbjct: 301 PAADAAPAGPSSCLG 315
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 216 bits (550), Expect = 2e-56
Identities = 131/336 (38%), Positives = 184/336 (54%), Gaps = 40/336 (11%)
Query: 1 MADTIFGSGNDQWVCPNDRQLALRAKLQTGWSVHTY-QTEKQRRKQHLSPAEVEAILQVI 59
M DT+F + +++W+ P+DR L ++KLQ GWSVH Q ++QR+++ L+ E E I +VI
Sbjct: 1 MTDTVFSNSSNRWMYPSDRPL--QSKLQAGWSVHPGGQPDRQRKQEELTDEEKEIINRVI 58
Query: 60 QRAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRKKV 119
RAE+++ +EQ+RIGRLV+RLE MR+NV G+G+++C+LCGE LG LGS+ V C+DC+K V
Sbjct: 59 ARAEKMEEMEQERIGRLVDRLENMRKNVAGDGVNRCILCGEQLGMLGSACVVCEDCKKNV 118
Query: 120 CTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGLPKYILPLKTPGRADDPHFRP 179
CTKCG+E + + +WLCKIC EQREVWKRSGAWF+KG PK +LP P + P +P
Sbjct: 119 CTKCGVETN-NRLHSVWLCKICIEQREVWKRSGAWFFKGFPKQVLPQPMPIKKTKPQ-QP 176
Query: 180 LPTEPAEREPRSSETSRIYTWARGRVVSSDSDSDSDLSSSSLEDRLPSTG-------VR- 231
+ A +P ARG DS+ + D + G VR
Sbjct: 177 VSEPAAPEQPAPEPKHPARAPARG-----DSEDRRGPGQKTGPDPASAPGRGNYGPPVRR 231
Query: 232 --------DRKGDKPWKESGGSVEAPRMGFTHPPGHLSGCQSSLASGETGTGSADPPGGP 283
+ + W SGG+ ++ R P L S AS GS P P
Sbjct: 232 ASEARMSSSSRDSESWDHSGGAGDSSR-----SPAGLRRANSVQAS-RPAPGSVQSPAPP 285
Query: 284 RPGLTRRAPVKDTPGRAPAA-------DAAPAGPSS 312
+PG P PG PA + AP+ P +
Sbjct: 286 QPG-QPGTPGGSRPGPGPAGRFPDQKPEVAPSDPGT 320
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 213 bits (543), Expect = 1e-55
Identities = 131/338 (38%), Positives = 182/338 (53%), Gaps = 40/338 (11%)
Query: 1 MADTIFGSGNDQWVCPNDRQLALRAK--LQTGWSVHTY-QTEKQRRKQHLSPAEVEAILQ 57
M DT+F + +++W+ P+DR L K LQ GWSVH Q ++QR+++ L+ E E I +
Sbjct: 1 MTDTVFSNSSNRWMYPSDRPLQSNDKEQLQAGWSVHPGGQPDRQRKQEELTDEEKEIINR 60
Query: 58 VIQRAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRK 117
VI RAE+++ +EQ+RIGRLV+RLE MR+NV G+G+++C+LCGE LG LGS+ V C+DC+K
Sbjct: 61 VIARAEKMEEMEQERIGRLVDRLENMRKNVAGDGVNRCILCGEQLGMLGSACVVCEDCKK 120
Query: 118 KVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGLPKYILPLKTPGRADDPHF 177
VCTKCG+E + + +WLCKIC EQREVWKRSGAWF+KG PK +LP P + P
Sbjct: 121 NVCTKCGVETN-NRLHSVWLCKICIEQREVWKRSGAWFFKGFPKQVLPQPMPIKKTKPQ- 178
Query: 178 RPLPTEPAEREPRSSETSRIYTWARGRVVSSDSDSDSDLSSSSLEDRLPSTG-------V 230
+P+ A +P ARG DS+ + D + G V
Sbjct: 179 QPVSEPAAPEQPAPEPKHPARAPARG-----DSEDRRGPGQKTGPDPASAPGRGNYGPPV 233
Query: 231 R---------DRKGDKPWKESGGSVEAPRMGFTHPPGHLSGCQSSLASGETGTGSADPPG 281
R + + W SGG+ ++ R P L S AS GS P
Sbjct: 234 RRASEARMSSSSRDSESWDHSGGAGDSSR-----SPAGLRRANSVQAS-RPAPGSVQSPA 287
Query: 282 GPRPGLTRRAPVKDTPGRAPAA-------DAAPAGPSS 312
P+PG P PG PA + AP+ P +
Sbjct: 288 PPQPG-QPGTPGGSRPGPGPAGRFPDQKPEVAPSDPGT 324
>gi|193804862 synaptotagmin-like 4 [Homo sapiens]
Length = 671
Score = 68.9 bits (167), Expect = 5e-12
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 47 LSPAEVEAILQVIQRAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQ-----CLLCGEV 101
LS E + IL V+QR E + +++RI RL L ++R G C C E
Sbjct: 10 LSEEEKDLILSVLQRDEEVRKADEKRIRRLKNELLEIKRKGAKRGSQHYSDRTCARCQES 69
Query: 102 LGFLGSSSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFY 156
LG L + C+ C VC C I+ S G W CK+C+++ E+ K +G WFY
Sbjct: 70 LGRLSPKTNTCRGCNHLVCRDCRIQESNGT----WRCKVCAKEIELKKATGDWFY 120
>gi|193804860 synaptotagmin-like 4 [Homo sapiens]
Length = 671
Score = 68.9 bits (167), Expect = 5e-12
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 47 LSPAEVEAILQVIQRAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQ-----CLLCGEV 101
LS E + IL V+QR E + +++RI RL L ++R G C C E
Sbjct: 10 LSEEEKDLILSVLQRDEEVRKADEKRIRRLKNELLEIKRKGAKRGSQHYSDRTCARCQES 69
Query: 102 LGFLGSSSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFY 156
LG L + C+ C VC C I+ S G W CK+C+++ E+ K +G WFY
Sbjct: 70 LGRLSPKTNTCRGCNHLVCRDCRIQESNGT----WRCKVCAKEIELKKATGDWFY 120
>gi|154354983 regulating synaptic membrane exocytosis 2 isoform a
[Homo sapiens]
Length = 1349
Score = 67.8 bits (164), Expect = 1e-11
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 21/165 (12%)
Query: 46 HLSPAEVEAILQVIQRAERLDVLEQQRIGRLVERLETMRRNV--MGNGLSQ--------- 94
HL+ E + IL V+ R ++ + EQ + +L ++ E + V MG Q
Sbjct: 31 HLTEEERKIILAVMDRQKKEEEKEQSVLKKLHQQFEMYKEQVKKMGEESQQQQEQKGDAP 90
Query: 95 -CLLCGEVLGFLGSSSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGA 153
C +C + F C C+ K C +CG S + +W+C +C +Q+E+ +SGA
Sbjct: 91 TCGICHKTK-FADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGA 149
Query: 154 WFYKGLPKYILPLKTPGRADDPHFRPLPTE--PAEREPRSSETSR 196
WFY TP + D R L E P E++P+ E ++
Sbjct: 150 WFYNS------GSNTPQQPDQKVLRGLRNEEAPQEKKPKLHEQTQ 188
>gi|110227631 synaptotagmin-like 3 [Homo sapiens]
Length = 542
Score = 62.8 bits (151), Expect = 4e-10
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 47 LSPAEVEAILQVIQRAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQ-----CLLCGEV 101
L E EAILQV+ R + + E++R +L L+ +R N + C C +V
Sbjct: 10 LKELEREAILQVLYRDQAVQNTEEERTRKLKTHLQHLRWKGAKNTDWEHKEKCCARCQQV 69
Query: 102 LGFLGSSSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYK 157
LGFL C+ C +VC +C + + W C +C E R V ++G WFY+
Sbjct: 70 LGFLLHRGAVCRGCSHRVCAQCRVFL---RGTHAWKCTVCFEDRNVKIKTGEWFYE 122
>gi|41054864 regulating synaptic membrane exocytosis 1 [Homo
sapiens]
Length = 1692
Score = 55.8 bits (133), Expect = 5e-08
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 22/155 (14%)
Query: 95 CLLCGEVLGFLGSSSVFCKDCRKKVCTKCG----IEASPGQKRPLWLCKICSEQREVWKR 150
C +C + F C CR K C +CG + ++ K +W+C +C +Q+E+ +
Sbjct: 116 CGICHKTK-FADGCGHLCSYCRTKFCARCGGRVSLRSNNEDKVVMWVCNLCRKQQEILTK 174
Query: 151 SGAWFYKGLPKYILPLKTPGRADDPHFRPLPTEPAEREPRSSETSRIYTWARGRVVSSDS 210
SGAWF+ P+ G D P E++ R E SR S
Sbjct: 175 SGAWFFGSGPQ---QTSQDGTLSDTATGAGSEVPREKKARLQERSR-------------S 218
Query: 211 DSDSDLSSSSLEDRLPSTGVRDR-KGDKPWKESGG 244
+ +++S +D P + DR KG +P +++ G
Sbjct: 219 QTPLSTAAASSQDAAPPSAPPDRSKGAEPSQQALG 253
>gi|254039650 synaptotagmin-like 5 isoform 1 [Homo sapiens]
Length = 730
Score = 53.1 bits (126), Expect = 3e-07
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
Query: 51 EVEAILQVIQRAERLDVLEQQRIGRLV-ERLETMRRN--VMGNGLSQCLLCGEVLGFLGS 107
E E IL V++R E L +E +RI +L E LE RR+ C+ C LG +
Sbjct: 17 EKEMILGVLKRDEYLKKVEDKRIRKLKNELLEAKRRSGKTQQEASRVCVHCHRNLGLIFD 76
Query: 108 SSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGLPKYILPLK 167
C+ C +VC +C + G W C +C + ++ +G WF++ K +
Sbjct: 77 RGDPCQACSLRVCRECRVAGPNGS----WKCTVCDKIAQLRIITGEWFFEEKAKRFKQVN 132
Query: 168 TPGRADDPHFRPLPTEPAEREPRSSETSR 196
G D L P E +S E +R
Sbjct: 133 VLG-TDVVRQSILRRSPGAEEVQSQEQTR 160
>gi|254039648 synaptotagmin-like 5 isoform 2 [Homo sapiens]
Length = 752
Score = 53.1 bits (126), Expect = 3e-07
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
Query: 51 EVEAILQVIQRAERLDVLEQQRIGRLV-ERLETMRRN--VMGNGLSQCLLCGEVLGFLGS 107
E E IL V++R E L +E +RI +L E LE RR+ C+ C LG +
Sbjct: 17 EKEMILGVLKRDEYLKKVEDKRIRKLKNELLEAKRRSGKTQQEASRVCVHCHRNLGLIFD 76
Query: 108 SSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGLPKYILPLK 167
C+ C +VC +C + G W C +C + ++ +G WF++ K +
Sbjct: 77 RGDPCQACSLRVCRECRVAGPNGS----WKCTVCDKIAQLRIITGEWFFEEKAKRFKQVN 132
Query: 168 TPGRADDPHFRPLPTEPAEREPRSSETSR 196
G D L P E +S E +R
Sbjct: 133 VLG-TDVVRQSILRRSPGAEEVQSQEQTR 160
>gi|20270305 synaptotagmin-like 5 isoform 1 [Homo sapiens]
Length = 730
Score = 53.1 bits (126), Expect = 3e-07
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
Query: 51 EVEAILQVIQRAERLDVLEQQRIGRLV-ERLETMRRN--VMGNGLSQCLLCGEVLGFLGS 107
E E IL V++R E L +E +RI +L E LE RR+ C+ C LG +
Sbjct: 17 EKEMILGVLKRDEYLKKVEDKRIRKLKNELLEAKRRSGKTQQEASRVCVHCHRNLGLIFD 76
Query: 108 SSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGLPKYILPLK 167
C+ C +VC +C + G W C +C + ++ +G WF++ K +
Sbjct: 77 RGDPCQACSLRVCRECRVAGPNGS----WKCTVCDKIAQLRIITGEWFFEEKAKRFKQVN 132
Query: 168 TPGRADDPHFRPLPTEPAEREPRSSETSR 196
G D L P E +S E +R
Sbjct: 133 VLG-TDVVRQSILRRSPGAEEVQSQEQTR 160
>gi|59853352 myosin VIIA and Rab interacting protein [Homo sapiens]
Length = 859
Score = 52.4 bits (124), Expect = 5e-07
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 47 LSPAEVEAILQVIQRAERLDVLEQQRIGRLVERL--ETMRRNVMGNGLS----QCLLCGE 100
L+ E E +LQV+QR L E++R+ L ++L E + +++ C+ C
Sbjct: 10 LTDDETEHVLQVVQRDFNLRKKEEERLSELKQKLDEEGSKCSILSKHQQFVEHCCMRCCS 69
Query: 101 VLGFLGSSSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGL 159
FL ++ C DC+ VC C S + W+C +C + R + +S WFY +
Sbjct: 70 PFTFLVNTKRQCGDCKFNVCKSC---CSYQKHEKAWVCCVCQQARLLRAQSLEWFYNNV 125
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 41.2 bits (95), Expect = 0.001
Identities = 40/135 (29%), Positives = 49/135 (36%), Gaps = 10/135 (7%)
Query: 178 RPLPTEPAEREPRSSETSRIYTWARGRVVSSDSDSDSDLSSSSLEDRLPSTGVRDRKGDK 237
RP P PA P S+ S G VSS S+S S S S PS +
Sbjct: 540 RPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPY 599
Query: 238 PWKESGGSVEAPRMGFTHPPGHLSGCQSSLASGETGTGSADPPGGPRPGLTRRAPVKDTP 297
P+ P T LS +++AS G +A PPG P G +RAP
Sbjct: 600 PF--------PPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYG--KRAPSPGAY 649
Query: 298 GRAPAADAAPAGPSS 312
A P P S
Sbjct: 650 KTATPPGYKPGSPPS 664
Score = 28.9 bits (63), Expect = 6.2
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 255 HP---PGHLSGCQSSLASGETGTGSADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGPS 311
HP PG G S G G G+A GGP G ++ P TP ++ A+ A P+
Sbjct: 216 HPQLYPGGTGGVLSGPPMGPKGGGAASSVGGPNGG--KQHPPPTTPISVSSSGASGAPPT 273
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 41.2 bits (95), Expect = 0.001
Identities = 40/135 (29%), Positives = 49/135 (36%), Gaps = 10/135 (7%)
Query: 178 RPLPTEPAEREPRSSETSRIYTWARGRVVSSDSDSDSDLSSSSLEDRLPSTGVRDRKGDK 237
RP P PA P S+ S G VSS S+S S S S PS +
Sbjct: 540 RPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPY 599
Query: 238 PWKESGGSVEAPRMGFTHPPGHLSGCQSSLASGETGTGSADPPGGPRPGLTRRAPVKDTP 297
P+ P T LS +++AS G +A PPG P G +RAP
Sbjct: 600 PF--------PPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYG--KRAPSPGAY 649
Query: 298 GRAPAADAAPAGPSS 312
A P P S
Sbjct: 650 KTATPPGYKPGSPPS 664
Score = 28.9 bits (63), Expect = 6.2
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 255 HP---PGHLSGCQSSLASGETGTGSADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGPS 311
HP PG G S G G G+A GGP G ++ P TP ++ A+ A P+
Sbjct: 216 HPQLYPGGTGGVLSGPPMGPKGGGAASSVGGPNGG--KQHPPPTTPISVSSSGASGAPPT 273
>gi|157168349 F-box and leucine-rich repeat protein 19 [Homo
sapiens]
Length = 694
Score = 40.0 bits (92), Expect = 0.003
Identities = 40/110 (36%), Positives = 45/110 (40%), Gaps = 20/110 (18%)
Query: 207 SSDSDSDSDLSSSSL-EDRLPS---TGVRDRKGDKPWKESGGSVEAPRMGFTHPPGHLSG 262
SSDSDSDSD S +SL ED P G R +G KE+ G A R G P
Sbjct: 327 SSDSDSDSDSSGTSLSEDEAPGEARNGRRPARGSSGEKENRGGRRAVRPGSGGP------ 380
Query: 263 CQSSLASGETGTGSADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGPSS 312
L S G P PRP R V+ P R+P D P S
Sbjct: 381 ----LLSWPLG-----PAPPPRPPQLERHVVRPPP-RSPEPDTLPLAAGS 420
>gi|109826351 melanophilin isoform 2 [Homo sapiens]
Length = 572
Score = 39.7 bits (91), Expect = 0.004
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 47 LSPAEVEAILQVIQRAERLDVLEQQRIGRLVERL--ETMRRNVMGNGL----SQCLLCGE 100
L+ E + +L+V+QR L E++R+ L ++ E+ +R ++ + + C C +
Sbjct: 10 LTDEEAQHVLEVVQRDFDLRRKEEERLEALKGKIKKESSKRELLSDTAHLNETHCARCLQ 69
Query: 101 VLGFLGSSSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYK 157
L +S C +C C CG P ++ W+C C R V S W+Y+
Sbjct: 70 PYQLLVNSKRQCLECGLFTCKSCG-RVHPEEQG--WICDPCHLARVVKIGSLEWYYE 123
>gi|13129108 melanophilin isoform 1 [Homo sapiens]
Length = 600
Score = 39.7 bits (91), Expect = 0.004
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 47 LSPAEVEAILQVIQRAERLDVLEQQRIGRLVERL--ETMRRNVMGNGL----SQCLLCGE 100
L+ E + +L+V+QR L E++R+ L ++ E+ +R ++ + + C C +
Sbjct: 10 LTDEEAQHVLEVVQRDFDLRRKEEERLEALKGKIKKESSKRELLSDTAHLNETHCARCLQ 69
Query: 101 VLGFLGSSSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYK 157
L +S C +C C CG P ++ W+C C R V S W+Y+
Sbjct: 70 PYQLLVNSKRQCLECGLFTCKSCG-RVHPEEQG--WICDPCHLARVVKIGSLEWYYE 123
>gi|51173722 bromodomain and PHD finger-containing protein 1 isoform 2
[Homo sapiens]
Length = 1214
Score = 39.3 bits (90), Expect = 0.005
Identities = 71/257 (27%), Positives = 94/257 (36%), Gaps = 37/257 (14%)
Query: 51 EVEAILQVIQRAERLDVLEQQRIG---RLVERLETMRRNVMGNGLSQCLLCGEVLGFLGS 107
EV A Q + R+ R +++++ +L + ET R +G S GS
Sbjct: 795 EVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSS----------RGS 844
Query: 108 SSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQ--REVWKRSGAWFYKGLPKYILP 165
+ C K T E S Q+ L S EV +R+ F K PK P
Sbjct: 845 LTPHPAACDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGP 904
Query: 166 LKTPGRADD-------PHFRPLPTEPAEREPRSSETSRIYTWARGRVV--SSDSDSDSDL 216
K PGR P P P + SS R RGR SS SDSDSD
Sbjct: 905 PKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMSSLRQR----KRGRSPRPSSSSDSDSDK 960
Query: 217 SSSSLEDRLPSTGVRDRKGDKPWKES----GGSVEAPRMGFTHPPGHLSGCQSSLASGET 272
S+ LP+ G G++P K+S PR S SS AS T
Sbjct: 961 STEDPPMDLPANGFSG--GNQPVKKSFLVYRNDCSLPRSSSDSESS--SSSSSSAASDRT 1016
Query: 273 GTGSADPPGGPRPGLTR 289
T + G +P +R
Sbjct: 1017 ST-TPSKQGRGKPSFSR 1032
>gi|51173720 bromodomain and PHD finger-containing protein 1 isoform 1
[Homo sapiens]
Length = 1220
Score = 39.3 bits (90), Expect = 0.005
Identities = 71/257 (27%), Positives = 94/257 (36%), Gaps = 37/257 (14%)
Query: 51 EVEAILQVIQRAERLDVLEQQRIG---RLVERLETMRRNVMGNGLSQCLLCGEVLGFLGS 107
EV A Q + R+ R +++++ +L + ET R +G S GS
Sbjct: 801 EVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSS----------RGS 850
Query: 108 SSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQ--REVWKRSGAWFYKGLPKYILP 165
+ C K T E S Q+ L S EV +R+ F K PK P
Sbjct: 851 LTPHPAACDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGP 910
Query: 166 LKTPGRADD-------PHFRPLPTEPAEREPRSSETSRIYTWARGRVV--SSDSDSDSDL 216
K PGR P P P + SS R RGR SS SDSDSD
Sbjct: 911 PKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMSSLRQR----KRGRSPRPSSSSDSDSDK 966
Query: 217 SSSSLEDRLPSTGVRDRKGDKPWKES----GGSVEAPRMGFTHPPGHLSGCQSSLASGET 272
S+ LP+ G G++P K+S PR S SS AS T
Sbjct: 967 STEDPPMDLPANGFSG--GNQPVKKSFLVYRNDCSLPRSSSDSESS--SSSSSSAASDRT 1022
Query: 273 GTGSADPPGGPRPGLTR 289
T + G +P +R
Sbjct: 1023 ST-TPSKQGRGKPSFSR 1038
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 38.9 bits (89), Expect = 0.006
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 178 RPLPTEPAEREPRSSETSRIYTWARGRVVSSDSDSDSDLSSSSLEDRLPSTGVRDRKGDK 237
RPL EP RE + W R R S + + +S++ + G+R ++
Sbjct: 135 RPLAGEPW-REAARRRPQQCPQWGRARESRSAALASPRVSNAPTTPASRNPGLRAQERQS 193
Query: 238 PWKESGGS---VEAPRMGFTHPPGHLSGCQSSLASGETGTGSADPPGGPRPGLTRRAPVK 294
+ +GG E PR+ P G G +S A+G GPR TRR P
Sbjct: 194 GRRAAGGGGARAEPPRVPPCRPAGCSGGNRSRRAAG----------AGPRT--TRRKPPP 241
Query: 295 DTPGRAPAA 303
PG APAA
Sbjct: 242 RPPGTAPAA 250
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 38.9 bits (89), Expect = 0.006
Identities = 58/217 (26%), Positives = 83/217 (38%), Gaps = 27/217 (12%)
Query: 112 CKDCRKKVCTKCGIEASPGQKR-PLWLCKICSEQREV-WKRSGAWFYKGLPKYILPLKTP 169
C C KVC +CG +P + WLC C QR + + A K + P +P
Sbjct: 190 CTQCHNKVCNQCGFNPNPHLTQVKEWLCLNCQMQRALGMDMTTAPRSKSQQQLHSPALSP 249
Query: 170 GRADDPHFRPL--PTEPAEREP-------RSSETSRIYTWARGRVVSSDSDSDSDLSSSS 220
A P +PL P + R P R +ET+R T G ++ +S
Sbjct: 250 --AHSPAKQPLGKPDQERSRGPGGPQPGSRQAETARA-TSVPGPAQAAAPPEVGRVSPQP 306
Query: 221 LEDRLPSTG-VRDRKGDKPWKESG------GSVEAPRMGFTHPPGHLSGCQSSLASGETG 273
+ PST R G+ P K + G+ E + G T G L G +SL + +
Sbjct: 307 PQPTKPSTAEPRPPAGEAPAKSATAVPAGLGATEQTQEGLT---GKLFGLGASLLTQAST 363
Query: 274 TGSADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGP 310
S P + + AP K TP + AGP
Sbjct: 364 LMSVQPEADTQ---GQPAPSKGTPKIVFNDASKEAGP 397
Score = 32.0 bits (71), Expect = 0.73
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 95 CLLCGEVLGFLGSSSVF----CKDCRKKVCTKCGIEASPG-QKRPLWLCKICSEQR 145
C LC L +GS S C CR +VC CG +P ++ WLC C +R
Sbjct: 465 CPLCQAELN-VGSKSPANYNTCTTCRLQVCNLCGFNPTPHLVEKTEWLCLNCQTKR 519
Score = 28.9 bits (63), Expect = 6.2
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 27/140 (19%)
Query: 169 PGRADDPHFRPLPTEPAEREPRSSETSR---------IYTWARGRVVSSDSDSDSDLSSS 219
P ++ P R +P+ A R+P++ + + T AR + S + S ++S
Sbjct: 3756 PQQSQSPSSRQIPSGAASRQPQTQQQQQGLGLQPPQQALTQARLQQQSQPTTRGSAPAAS 3815
Query: 220 SLEDRL---PSTGVRDRKGDKPWKE----SGGSVEAPRMGFTHPPGHLSGCQSSLASGET 272
+ PST + P E S G+ +AP+ G ++ A
Sbjct: 3816 QPAGKPQPGPSTATGPQPAGPPRAEQTNGSKGTAKAPQQG-----------RAPQAQPAP 3864
Query: 273 GTGSADPPGGPRPGLTRRAP 292
G G A G RPG T AP
Sbjct: 3865 GPGPAGVKAGARPGGTPGAP 3884
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 37.0 bits (84), Expect = 0.023
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 13/151 (8%)
Query: 178 RPLPTEPAEREPRSSETSRIYTWARGRVVSSDSDSDS---DLSSSSLEDRLPSTGVRDRK 234
RP P P E + R E SR S S+ + +L +L TG ++
Sbjct: 373 RPEPLSPKESKKRKLELSRREQPPTEPGPQSASEVEKIALNLEGCALSQGSLRTGTQEVG 432
Query: 235 GD------KPWKESGGSVEAPRMGFTHPPGHLSGCQSSLASGETGT----GSADPPGGPR 284
G +P ++ G+ A ++ +G +++ASG T GS P G P+
Sbjct: 433 GQDPGEAVQPCRQPLGARVADKVRKRRKVDEGAGDSAAVASGGAQTLALAGSPAPSGHPK 492
Query: 285 PGLTRRAPVKDTPGRAPAADAAPAGPSSCLG 315
G + +DT GR + P PS G
Sbjct: 493 AGHSENGVEEDTEGRTGPKEGTPGSPSETPG 523
Score = 31.2 bits (69), Expect = 1.3
Identities = 40/152 (26%), Positives = 50/152 (32%), Gaps = 26/152 (17%)
Query: 169 PGRADDPHFRPLPTEPAEREPRSSETSRIYTWARGRVVSSDSDSDSDLSSSSLEDRLPST 228
PG A P +PL A++ R R + DS +S L
Sbjct: 436 PGEAVQPCRQPLGARVADK-------------VRKRRKVDEGAGDSAAVASGGAQTLALA 482
Query: 229 GVRDRKGDKPWKESGGSVEAPRMGFTHP----PGHLSGCQSSLASGETGTGSADPPG--- 281
G G S VE G T P PG S +G G A+ P
Sbjct: 483 GSPAPSGHPKAGHSENGVEEDTEGRTGPKEGTPGSPSETPGPSPAGPAGDEPAESPSETP 542
Query: 282 GPRPGLTRRAPVKDTPGRAPAADAA--PAGPS 311
GPRP P D P +P+ PAGP+
Sbjct: 543 GPRPA----GPAGDEPAESPSETPGPRPAGPA 570
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 37.0 bits (84), Expect = 0.023
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query: 189 PRSSETSRIYTWARGRVVSSDSDSDSDLSSSSLEDRLPSTGVRDRKGDKPWKESGGSVEA 248
P TS + RG +SSD D++ S + S R+ D P G EA
Sbjct: 362 PTPPATSALQQGLRGLHLSSDRLQDTNRLKRSFSLDIKSAYAPSRRPDGPGPPDPG--EA 419
Query: 249 PRMGFTHPPGHLSGCQSSLASGETGTGSADPPGGPRPGLTRRAPVKDTPGRAPA 302
P++ P SG L+S + A P PRP R P +P R+PA
Sbjct: 420 PKLCKLDSP---SGAALGLSSPSPDSPDAAPEARPRPRRRPRPPA-GSPARSPA 469
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 36.2 bits (82), Expect = 0.039
Identities = 34/109 (31%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Query: 207 SSDSDSDSDLSSSSLEDRLPSTGVRDRKGDKPWKESGGSVEAPRMGFTHPPGH-----LS 261
SS S S S SSSS S+ + +K D P + G+ P P LS
Sbjct: 94 SSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAFGAPPPPLFDAAFPTPQWGIVDLS 153
Query: 262 GCQSSLASGETGTGSADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGP 310
G Q + + G ++ P G PGL A PG PA P GP
Sbjct: 154 GHQHLFGNLKRGGPASGP--GVTPGLGAPA---GAPGPLPAPSQTPPGP 197
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 36.2 bits (82), Expect = 0.039
Identities = 34/109 (31%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Query: 207 SSDSDSDSDLSSSSLEDRLPSTGVRDRKGDKPWKESGGSVEAPRMGFTHPPGH-----LS 261
SS S S S SSSS S+ + +K D P + G+ P P LS
Sbjct: 94 SSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAFGAPPPPLFDAAFPTPQWGIVDLS 153
Query: 262 GCQSSLASGETGTGSADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGP 310
G Q + + G ++ P G PGL A PG PA P GP
Sbjct: 154 GHQHLFGNLKRGGPASGP--GVTPGLGAPA---GAPGPLPAPSQTPPGP 197
>gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like
3-like [Homo sapiens]
Length = 208
Score = 36.2 bits (82), Expect = 0.039
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 226 PSTGVRDRKGDKPWKESGGSVEAPRMGFTHP---------PGHLSGCQSSLASGETGTGS 276
P VR RKGD+ ++ R+ P P HL S LA G G S
Sbjct: 68 PDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGE-S 126
Query: 277 ADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGPSSC 313
D G R R+P++ TPGR PA P C
Sbjct: 127 LDRAGAERV----RSPLEPTPGRFPAVAGGPTPGMGC 159
>gi|113428063 PREDICTED: similar to methyl-CpG binding domain
protein 3-like 2 [Homo sapiens]
Length = 204
Score = 36.2 bits (82), Expect = 0.039
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 226 PSTGVRDRKGDKPWKESGGSVEAPRMGFTHP---------PGHLSGCQSSLASGETGTGS 276
P VR RKGD+ ++ R+ P P HL S LA G G S
Sbjct: 68 PDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGE-S 126
Query: 277 ADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGPSSC 313
D G R R+P++ TPGR PA P C
Sbjct: 127 LDRAGAERV----RSPLEPTPGRFPAVAGGPTPGMGC 159
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 36.2 bits (82), Expect = 0.039
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 242 SGGSVEAPR---MGFTHPPGHLSGCQSSLASGETGTGSADPPGGPRPGLTRRAPVKDTPG 298
+GG+++ R M H P + S +S G+GS PP GP P L P+ PG
Sbjct: 421 AGGALQHSRSMSMPVAHSPPAATSPGSLSSSSGHGSGSYPPPPGPHPPLPH--PLHHGPG 478
Query: 299 RAPAADAAPAGPS 311
+ P++ +A A S
Sbjct: 479 QRPSSGSASASGS 491
>gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo
sapiens]
Length = 208
Score = 36.2 bits (82), Expect = 0.039
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 226 PSTGVRDRKGDKPWKESGGSVEAPRMGFTHP---------PGHLSGCQSSLASGETGTGS 276
P VR RKGD+ ++ R+ P P HL S LA G G S
Sbjct: 68 PDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGE-S 126
Query: 277 ADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGPSSC 313
D G R R+P++ TPGR PA P C
Sbjct: 127 LDRAGAERV----RSPLEPTPGRFPAVAGGPTPGMGC 159
>gi|169217724 PREDICTED: similar to methyl-CpG binding domain
protein 3-like 2, partial [Homo sapiens]
Length = 193
Score = 35.8 bits (81), Expect = 0.051
Identities = 32/97 (32%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 226 PSTGVRDRKGD----KP-----WKESGGSVEAPRMGFTHPPGHLSGCQSSLASGETGTGS 276
P VR RKGD KP +++ G P HL S LA G T + S
Sbjct: 53 PDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPG-TASES 111
Query: 277 ADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGPSSC 313
D G R R+P++ TPGR PA P C
Sbjct: 112 LDRAGAERV----RSPLEPTPGRFPAVAGGPTPGMGC 144
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,596,041
Number of Sequences: 37866
Number of extensions: 903589
Number of successful extensions: 5257
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 241
Number of HSP's that attempted gapping in prelim test: 4936
Number of HSP's gapped (non-prelim): 564
length of query: 315
length of database: 18,247,518
effective HSP length: 102
effective length of query: 213
effective length of database: 14,385,186
effective search space: 3064044618
effective search space used: 3064044618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.