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Search of human proteins with 58331120
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo
sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens] 369 e-103
gi|58331124 hypothetical protein LOC29058 isoform 2 [Homo sapiens] 240 4e-64
gi|58331122 hypothetical protein LOC29058 isoform 2 [Homo sapiens] 240 4e-64
gi|42476068 hypothetical protein LOC29058 isoform 2 [Homo sapiens] 240 4e-64
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 54 1e-07
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 52 2e-07
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 51 5e-07
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ... 48 5e-06
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] 47 7e-06
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 47 7e-06
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens] 45 3e-05
gi|239755619 PREDICTED: hypothetical protein [Homo sapiens] 45 3e-05
gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo ... 45 3e-05
gi|94680985 cyclin J-like [Homo sapiens] 45 3e-05
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 45 3e-05
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 44 8e-05
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 44 8e-05
gi|13376701 transmembrane protein 134 isoform a [Homo sapiens] 44 8e-05
gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens] 43 1e-04
gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens] 43 1e-04
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 43 1e-04
gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens] 42 2e-04
gi|34147403 intraflagellar transport 81-like isoform 2 [Homo sap... 42 3e-04
gi|187608508 centromere protein L isoform 1 [Homo sapiens] 42 3e-04
gi|118403324 transmembrane protein 134 isoform c [Homo sapiens] 41 5e-04
gi|51243063 MAD2L1 binding protein isoform 1 [Homo sapiens] 41 7e-04
gi|156231351 Niemann-Pick C1-like protein 1 isoform 1 [Homo sapi... 40 9e-04
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 40 0.001
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 40 0.001
gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens] 39 0.003
>gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens]
Length = 183
Score = 369 bits (947), Expect = e-103
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MQPWALPTVGELWVCGRPGAALRWSLVLSPRLEPSGVISAHCNLHLLASSDSSASASRLC 60
MQPWALPTVGELWVCGRPGAALRWSLVLSPRLEPSGVISAHCNLHLLASSDSSASASRLC
Sbjct: 1 MQPWALPTVGELWVCGRPGAALRWSLVLSPRLEPSGVISAHCNLHLLASSDSSASASRLC 60
Query: 61 QRVMMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGA 120
QRVMMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGA
Sbjct: 61 QRVMMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGA 120
Query: 121 FLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPD 180
FLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPD
Sbjct: 121 FLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPD 180
Query: 181 FDD 183
FDD
Sbjct: 181 FDD 183
>gi|58331124 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
Length = 120
Score = 240 bits (613), Expect = 4e-64
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 64 MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI 123
MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI
Sbjct: 1 MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI 60
Query: 124 IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD 183
IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD
Sbjct: 61 IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD 120
>gi|58331122 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
Length = 120
Score = 240 bits (613), Expect = 4e-64
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 64 MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI 123
MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI
Sbjct: 1 MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI 60
Query: 124 IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD 183
IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD
Sbjct: 61 IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD 120
>gi|42476068 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
Length = 120
Score = 240 bits (613), Expect = 4e-64
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 64 MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI 123
MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI
Sbjct: 1 MMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLI 60
Query: 124 IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD 183
IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD
Sbjct: 61 IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFDD 120
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 53.5 bits (127), Expect = 1e-07
Identities = 26/37 (70%), Positives = 29/37 (78%)
Query: 23 RWSLVLSPRLEPSGVISAHCNLHLLASSDSSASASRL 59
RW+L LSPRLE SG ISAHCN HL SS+S A ASR+
Sbjct: 135 RWNLALSPRLECSGKISAHCNPHLQGSSNSPAQASRV 171
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 52.4 bits (124), Expect = 2e-07
Identities = 25/37 (67%), Positives = 27/37 (72%)
Query: 23 RWSLVLSPRLEPSGVISAHCNLHLLASSDSSASASRL 59
RWSL L PR E SG +SAHCNLHL SSDS AS R+
Sbjct: 106 RWSLTLLPRPECSGAVSAHCNLHLPGSSDSHASVPRV 142
>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
Length = 167
Score = 51.2 bits (121), Expect = 5e-07
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 22 LRWSLVLSPRLEPSGVISAHCNLHLLASSDSSASAS 57
LR +L LSP+LE SGV+ AHCNLHLL SS S ASAS
Sbjct: 132 LRQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
sapiens]
Length = 261
Score = 47.8 bits (112), Expect = 5e-06
Identities = 30/57 (52%), Positives = 33/57 (57%)
Query: 26 LVLSPRLEPSGVISAHCNLHLLASSDSSASASRLCQRVMMPSRTNLATGIPSSKVKY 82
L L PRLE SG ISA CNL LL SSDS ASAS++ M R A I S +Y
Sbjct: 8 LALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQSDFQY 64
>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
Length = 226
Score = 47.4 bits (111), Expect = 7e-06
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 25 SLVLSPRLEPSGVISAHCNLHLLASSDSSASASR 58
SL LSPRLE +G+ISAHCNL L SS+S ASAS+
Sbjct: 58 SLALSPRLERNGMISAHCNLCLTGSSNSPASASQ 91
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 47.4 bits (111), Expect = 7e-06
Identities = 25/35 (71%), Positives = 27/35 (77%)
Query: 25 SLVLSPRLEPSGVISAHCNLHLLASSDSSASASRL 59
SL LSP+LE SG I AH NL LL SSDS ASASR+
Sbjct: 457 SLALSPKLECSGTILAHSNLRLLGSSDSPASASRV 491
>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
Length = 135
Score = 45.4 bits (106), Expect = 3e-05
Identities = 25/33 (75%), Positives = 25/33 (75%)
Query: 25 SLVLSPRLEPSGVISAHCNLHLLASSDSSASAS 57
SL L PRLE SGVI AHCNL LL SSDS A AS
Sbjct: 103 SLALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
>gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 45.4 bits (106), Expect = 3e-05
Identities = 28/53 (52%), Positives = 31/53 (58%)
Query: 30 PRLEPSGVISAHCNLHLLASSDSSASASRLCQRVMMPSRTNLATGIPSSKVKY 82
PRLE SG ISA CNL LL SSDS ASAS++ M R A I S +Y
Sbjct: 12 PRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQSDFQY 64
>gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo
sapiens]
Length = 261
Score = 45.4 bits (106), Expect = 3e-05
Identities = 28/53 (52%), Positives = 31/53 (58%)
Query: 30 PRLEPSGVISAHCNLHLLASSDSSASASRLCQRVMMPSRTNLATGIPSSKVKY 82
PRLE SG ISA CNL LL SSDS ASAS++ M R A I S +Y
Sbjct: 12 PRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQSDFQY 64
>gi|94680985 cyclin J-like [Homo sapiens]
Length = 435
Score = 45.4 bits (106), Expect = 3e-05
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 27 VLSPRLEPSGVISAHCNLHLLASSDSSASA 56
+LSPRL+ SG+ISAHCNLHL SS+S ASA
Sbjct: 98 LLSPRLKCSGMISAHCNLHLPGSSNSPASA 127
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 45.1 bits (105), Expect = 3e-05
Identities = 30/59 (50%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 1 MQPWALPTVGELWVCGRPGAALRWSLVLSPRLEPSGVISAHCNLHLLASSDSSASASRL 59
+Q WAL + L P L + L+ SPRLE SG IS HCNL L SS+S ASASR+
Sbjct: 771 VQVWALGSDQLLQELRDP--TLTFRLLGSPRLECSGTISPHCNLLLPGSSNSPASASRV 827
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 43.9 bits (102), Expect = 8e-05
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 31 RLEPSGVISAHCNLHLLASSDSSASASRL 59
RLE +G ISAHCNLHL SSDS AS+SR+
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASSSRV 77
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 43.9 bits (102), Expect = 8e-05
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 31 RLEPSGVISAHCNLHLLASSDSSASASRL 59
RLE +G ISAHCNLHL SSDS AS+SR+
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASSSRV 77
>gi|13376701 transmembrane protein 134 isoform a [Homo sapiens]
Length = 195
Score = 43.9 bits (102), Expect = 8e-05
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 67 SRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYK---AIALATVLFLIGAFLI 123
+R + T I SS+ +S +SS+ + T + K + + +L L+G LI
Sbjct: 79 TRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFLLLLLGLVLI 138
Query: 124 IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFD 182
++G L + G A+ + G L+ +PG YH+ Y A KG+RG+ + +P F+
Sbjct: 139 LVGVGLEA--TPSPGVSSAI-FFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFE 194
>gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens]
Length = 600
Score = 43.1 bits (100), Expect = 1e-04
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 31 RLEPSGVISAHCNLHLLASSDSSASASRLCQRVMMPSRTNLATGI 75
RLE SG I AHCN LL S+DSSASAS++ + P + +
Sbjct: 33 RLEYSGTILAHCNFRLLGSNDSSASASQVTGTTVSPEAVGFLSAV 77
>gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens]
Length = 619
Score = 43.1 bits (100), Expect = 1e-04
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 31 RLEPSGVISAHCNLHLLASSDSSASASRLCQRVMMPSRTNLATGI 75
RLE SG I AHCN LL S+DSSASAS++ + P + +
Sbjct: 33 RLEYSGTILAHCNFRLLGSNDSSASASQVTGTTVSPEAVGFLSAV 77
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 43.1 bits (100), Expect = 1e-04
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 31 RLEPSGVISAHCNLHLLASSDSSASASRL 59
RLE SG ISAHC+LHL SSDS ASAS++
Sbjct: 8 RLECSGAISAHCSLHLPGSSDSPASASQI 36
>gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]
Length = 148
Score = 42.4 bits (98), Expect = 2e-04
Identities = 22/35 (62%), Positives = 25/35 (71%)
Query: 25 SLVLSPRLEPSGVISAHCNLHLLASSDSSASASRL 59
SL +SPRLE +G ISAHC L L SSDS S SR+
Sbjct: 72 SLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRV 106
>gi|34147403 intraflagellar transport 81-like isoform 2 [Homo
sapiens]
Length = 431
Score = 42.0 bits (97), Expect = 3e-04
Identities = 22/35 (62%), Positives = 24/35 (68%)
Query: 23 RWSLVLSPRLEPSGVISAHCNLHLLASSDSSASAS 57
R L LSPRLE GVI A+C+L LL SSD SAS
Sbjct: 397 RQDLTLSPRLECGGVIMAYCSLKLLGSSDPPTSAS 431
>gi|187608508 centromere protein L isoform 1 [Homo sapiens]
Length = 390
Score = 42.0 bits (97), Expect = 3e-04
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 18 PGAALRWSLVLSPRLEPSGVISAHCNLHLLASSDSS------ASASRLCQRVMMPSRTNL 71
P A L L+LSPRLE SG I CNL LL SSD S A + C + S++ L
Sbjct: 134 PEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIVSKSQL 193
Query: 72 ATGIPSSKVKYS 83
+ KV ++
Sbjct: 194 PSENREGKVLWT 205
>gi|118403324 transmembrane protein 134 isoform c [Homo sapiens]
Length = 186
Score = 41.2 bits (95), Expect = 5e-04
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 107 KAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYA 166
+ + + +L L+G LI++G L + G A+ + G L+ +PG YH+ Y A
Sbjct: 113 RVVLASFLLLLLGLVLILVGVGLEA--TPSPGVSSAI-FFVPGFLLLVPGVYHVIFIYCA 169
Query: 167 SKGYRGYSYDDIPDFD 182
KG+RG+ + +P F+
Sbjct: 170 VKGHRGFQFFYLPYFE 185
>gi|51243063 MAD2L1 binding protein isoform 1 [Homo sapiens]
Length = 306
Score = 40.8 bits (94), Expect = 7e-04
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 25 SLVLSPRLEPSGVISAHCNLHLLASSDSSASASRLCQ 61
SL LSPRLE +G+ SAH N L S DS ASAS++ +
Sbjct: 9 SLTLSPRLEHNGMTSAHHNFRLPGSRDSPASASQVAE 45
>gi|156231351 Niemann-Pick C1-like protein 1 isoform 1 [Homo sapiens]
Length = 1359
Score = 40.4 bits (93), Expect = 9e-04
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 19 GAALRWSLVLSPRLEPSGVISAHCNLHLLASS 50
G L +LSPRLE SG ISAHCNL+LL S+
Sbjct: 1042 GQVLDTVAILSPRLEYSGTISAHCNLYLLDST 1073
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 39.7 bits (91), Expect = 0.001
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 27 VLSPRLEPSGVISAHCNLHLLASSDSSASASRL 59
V+SPRLE SG + AHC+L LL SS+ SAS++
Sbjct: 439 VMSPRLECSGTVIAHCSLKLLDSSNPPTSASQV 471
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 39.7 bits (91), Expect = 0.001
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 22 LRWSLVLSPRLEPSGVISAHCNLHLLASSDSSASASRL 59
++ SL LSP L S ISAHCN L SSD ASAS++
Sbjct: 1096 IKQSLALSPGLGCSSAISAHCNFRLPGSSDFPASASQV 1133
>gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens]
Length = 940
Score = 38.5 bits (88), Expect = 0.003
Identities = 18/23 (78%), Positives = 21/23 (91%)
Query: 37 VISAHCNLHLLASSDSSASASRL 59
+ISAHCNL LL SSDSSASAS++
Sbjct: 1 MISAHCNLRLLCSSDSSASASQV 23
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.140 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,169,106
Number of Sequences: 37866
Number of extensions: 289214
Number of successful extensions: 814
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 760
Number of HSP's gapped (non-prelim): 60
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Search sequences |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.