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Search of human proteins with 58330892
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58330892 interferon-induced protein with tetratricopeptide
repeats 1-like [Homo sapiens]
(474 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58330892 interferon-induced protein with tetratricopeptide re... 961 0.0
gi|116534937 interferon-induced protein with tetratricopeptide r... 652 0.0
gi|6912630 interferon-induced protein with tetratricopeptide rep... 520 e-147
gi|31542980 interferon-induced protein with tetratricopeptide re... 391 e-109
gi|72534658 interferon-induced protein with tetratricopeptide re... 391 e-109
gi|153082755 interferon-induced protein with tetratricopeptide r... 384 e-106
gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens] 51 3e-06
gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens] 51 3e-06
gi|170784867 tetratricopeptide repeat domain 13 isoform a [Homo ... 49 1e-05
gi|225735593 RNA polymerase II associated protein 3 isoform 2 [H... 42 0.001
gi|225735591 RNA polymerase II associated protein 3 isoform 1 [H... 42 0.001
gi|17149828 NMDA receptor regulated 1 [Homo sapiens] 42 0.001
gi|170784869 tetratricopeptide repeat domain 13 isoform b [Homo ... 42 0.002
gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Ho... 40 0.005
gi|54607135 translocase of outer mitochondrial membrane 70 homol... 39 0.013
gi|4885583 Rho-associated, coiled-coil containing protein kinase... 38 0.023
gi|7661950 SH2 domain binding protein 1 [Homo sapiens] 37 0.039
gi|83415184 transmembrane and tetratricopeptide repeat containin... 37 0.039
gi|7662078 tetratricopeptide repeat domain 37 [Homo sapiens] 35 0.11
gi|118766328 transmembrane and tetratricopeptide repeat containi... 35 0.15
gi|118766330 transmembrane and tetratricopeptide repeat containi... 35 0.15
gi|24308141 small glutamine-rich tetratricopeptide repeat (TPR)-... 35 0.19
gi|25952122 Bardet-Biedl syndrome 4 [Homo sapiens] 34 0.25
gi|239756104 PREDICTED: tetratricopeptide repeat domain 6 [Homo ... 33 0.43
gi|239750633 PREDICTED: tetratricopeptide repeat domain 6 [Homo ... 33 0.43
gi|239744942 PREDICTED: chromosome 14 open reading frame 25 [Hom... 33 0.43
gi|222418587 hypothetical protein LOC57495 [Homo sapiens] 33 0.56
gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens] 32 0.96
gi|74271826 glutamine synthetase [Homo sapiens] 32 0.96
gi|74271837 glutamine synthetase [Homo sapiens] 32 0.96
>gi|58330892 interferon-induced protein with tetratricopeptide
repeats 1-like [Homo sapiens]
Length = 474
Score = 961 bits (2483), Expect = 0.0
Identities = 474/474 (100%), Positives = 474/474 (100%)
Query: 1 MSEESDGKLIEDSLIQLRCHFTWKLLIEAPEIPDLENRIWEEIQFLDTKYNVGIHNLLAY 60
MSEESDGKLIEDSLIQLRCHFTWKLLIEAPEIPDLENRIWEEIQFLDTKYNVGIHNLLAY
Sbjct: 1 MSEESDGKLIEDSLIQLRCHFTWKLLIEAPEIPDLENRIWEEIQFLDTKYNVGIHNLLAY 60
Query: 61 VKHLKGQNEEALVSLKKAEDLIQKEHANQADIRSLVTWGNFAWVYYHMGRLAEAQTYLDK 120
VKHLKGQNEEALVSLKKAEDLIQKEHANQADIRSLVTWGNFAWVYYHMGRLAEAQTYLDK
Sbjct: 61 VKHLKGQNEEALVSLKKAEDLIQKEHANQADIRSLVTWGNFAWVYYHMGRLAEAQTYLDK 120
Query: 121 VENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNYERAKTCFEKALEGNPENPEFNTG 180
VENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNYERAKTCFEKALEGNPENPEFNTG
Sbjct: 121 VENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNYERAKTCFEKALEGNPENPEFNTG 180
Query: 181 YAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYI 240
YAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYI
Sbjct: 181 YAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYI 240
Query: 241 EEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMI 300
EEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMI
Sbjct: 241 EEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMI 300
Query: 301 QIKEATNWQPRGQDRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHHRKAE 360
QIKEATNWQPRGQDRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHHRKAE
Sbjct: 301 QIKEATNWQPRGQDRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHHRKAE 360
Query: 361 EHFQKGLRMKIFEDQLKQEIHYHYGRFQEHHGKSQDKAITHYLKGLKIEKMSHSREKLLN 420
EHFQKGLRMKIFEDQLKQEIHYHYGRFQEHHGKSQDKAITHYLKGLKIEKMSHSREKLLN
Sbjct: 361 EHFQKGLRMKIFEDQLKQEIHYHYGRFQEHHGKSQDKAITHYLKGLKIEKMSHSREKLLN 420
Query: 421 ALEKLAKRCIHQNVRVVESVSLLGLIHKLKGEVSDALLCYERALRLAADLNPIF 474
ALEKLAKRCIHQNVRVVESVSLLGLIHKLKGEVSDALLCYERALRLAADLNPIF
Sbjct: 421 ALEKLAKRCIHQNVRVVESVSLLGLIHKLKGEVSDALLCYERALRLAADLNPIF 474
>gi|116534937 interferon-induced protein with tetratricopeptide
repeats 1 isoform 2 [Homo sapiens]
Length = 478
Score = 652 bits (1681), Expect = 0.0
Identities = 319/469 (68%), Positives = 386/469 (82%)
Query: 1 MSEESDGKLIEDSLIQLRCHFTWKLLIEAPEIPDLENRIWEEIQFLDTKYNVGIHNLLAY 60
MS D ++DSL QLRCHFTW+L I+ E+PDLENR+ ++I+FLDTKY+VGIHNLLAY
Sbjct: 1 MSTNGDDHQVKDSLEQLRCHFTWELSIDDDEMPDLENRVLDQIEFLDTKYSVGIHNLLAY 60
Query: 61 VKHLKGQNEEALVSLKKAEDLIQKEHANQADIRSLVTWGNFAWVYYHMGRLAEAQTYLDK 120
VKHLKGQNEEAL SLK+AE+L+Q+EH NQA++RSLVTWGNFAW+YYHMGRLAEAQTYLDK
Sbjct: 61 VKHLKGQNEEALKSLKEAENLMQEEHDNQANVRSLVTWGNFAWMYYHMGRLAEAQTYLDK 120
Query: 121 VENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNYERAKTCFEKALEGNPENPEFNTG 180
VEN CKK +NP RYRMECPE+DCEEGWAL KCGGKNYERAK CFEK LE +PENPE + G
Sbjct: 121 VENICKKLSNPFRYRMECPEIDCEEGWALLKCGGKNYERAKACFEKVLEVDPENPESSAG 180
Query: 181 YAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYI 240
YAI+ YRLD F A+ +K FSL L++AVRLNPD+ YI+VLLALKLQDEGQEAEGEKYI
Sbjct: 181 YAISAYRLDGFKLATKNHKPFSLLPLRQAVRLNPDNGYIKVLLALKLQDEGQEAEGEKYI 240
Query: 241 EEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMI 300
EEAL ++SSQ YVF+YAAKFYRRKGSVDKALELLK AL+ TPTS LHHQ+GLCY+AQMI
Sbjct: 241 EEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQMI 300
Query: 301 QIKEATNWQPRGQDRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHHRKAE 360
QIKEAT QPRGQ+RE +D++++ AI FE + K TFE+A++DLA Y E G+HRKAE
Sbjct: 301 QIKEATKGQPRGQNREKLDKMIRSAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAE 360
Query: 361 EHFQKGLRMKIFEDQLKQEIHYHYGRFQEHHGKSQDKAITHYLKGLKIEKMSHSREKLLN 420
E+FQK L MK ++ Q+IH+HYGRFQE KS AI HYLK +KIE+ S +R+K +N
Sbjct: 361 ENFQKLLCMKPVVEETMQDIHFHYGRFQEFQKKSDVNAIIHYLKAIKIEQASLTRDKSIN 420
Query: 421 ALEKLAKRCIHQNVRVVESVSLLGLIHKLKGEVSDALLCYERALRLAAD 469
+L+KL R + + +ES+SLLG ++KL+G +++AL YERALRLAAD
Sbjct: 421 SLKKLVLRKLRRKALDLESLSLLGFVYKLEGNMNEALEYYERALRLAAD 469
>gi|6912630 interferon-induced protein with tetratricopeptide
repeats 5 [Homo sapiens]
Length = 482
Score = 520 bits (1339), Expect = e-147
Identities = 258/453 (56%), Positives = 337/453 (74%), Gaps = 1/453 (0%)
Query: 14 LIQLRCHFTWKLLIEAPEIPDLENRIWEEIQFLDTKYNVGIHNLLAYVKHLKGQNEEALV 73
L++L CHFTW LL E ++ ++E+ I ++++FL TK + ++NLLAYVKHLKGQN++AL
Sbjct: 13 LLELECHFTWNLLKEDIDLFEVEDTIGQQLEFLTTKSRLALYNLLAYVKHLKGQNKDALE 72
Query: 74 SLKKAEDLIQKEHANQADIRSLVTWGNFAWVYYHMGRLAEAQTYLDKVENTCKKFANPSR 133
L++AE++IQ+EH+++ ++RSLVTWGN+AWVYYHM +L EAQ Y K+ N CKK ++PS
Sbjct: 73 CLEQAEEIIQQEHSDKEEVRSLVTWGNYAWVYYHMDQLEEAQKYTGKIGNVCKKLSSPSN 132
Query: 134 YRMECPEVDCEEGWALAKCGGKNYERAKTCFEKALEGNPENPEFNTGYAITVYRLDKFNT 193
Y++ECPE DCE+GWAL K GGK Y++AK FEKALE P+NPEFN GYAITVYRLD +
Sbjct: 133 YKLECPETDCEKGWALLKFGGKYYQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDD-SD 191
Query: 194 ASGRNKAFSLHVLKRAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYV 253
G K+FSL L++AV LNPD+ YI+V LALKLQD EAEGEKYIEE L ISSQ YV
Sbjct: 192 REGSVKSFSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYV 251
Query: 254 FQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMIQIKEATNWQPRGQ 313
+YAAKFYRRK S +KALELLK ALE TPTS+FLHHQMGLCYRAQMIQIK+AT+ +P+G+
Sbjct: 252 LRYAAKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQMIQIKKATHNRPKGK 311
Query: 314 DRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHHRKAEEHFQKGLRMKIFE 373
D+ VD L+ AI F+ + F AY DLA YAE G + AE+ F+K LR++
Sbjct: 312 DKLKVDELISSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLENIT 371
Query: 374 DQLKQEIHYHYGRFQEHHGKSQDKAITHYLKGLKIEKMSHSREKLLNALEKLAKRCIHQN 433
D K +IHYHYGRFQE H KS++ AI HYL+ LK++ S R KL +AL+KL+ + + N
Sbjct: 372 DDHKHQIHYHYGRFQEFHRKSENTAIHHYLEALKVKDRSPLRTKLTSALKKLSTKRLCHN 431
Query: 434 VRVVESVSLLGLIHKLKGEVSDALLCYERALRL 466
V+S+S LG ++KL+GE A YE+A ++
Sbjct: 432 ALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKI 464
>gi|31542980 interferon-induced protein with tetratricopeptide
repeats 3 [Homo sapiens]
Length = 490
Score = 391 bits (1004), Expect = e-109
Identities = 217/470 (46%), Positives = 301/470 (64%), Gaps = 23/470 (4%)
Query: 1 MSEESDGKLIEDSLIQLRCHFTWKLLIEAPEIPDLENRIWEEIQFLDTKYNVGIHNLLAY 60
MSE + L E L QL+CHFTW L E DLE+R+ +I+FL+T++ ++NLLAY
Sbjct: 1 MSEVTKNSL-EKILPQLKCHFTWNLFKEDSVSRDLEDRVCNQIEFLNTEFKATMYNLLAY 59
Query: 61 VKHLKGQNEEALVSLKKAEDLIQKEHANQADIRSLVTWGNFAWVYYHMGRLAEAQTYLDK 120
+KHL G NE AL L++AE+LIQ+EHA+QA+IRSLVTWGN+AWVYYH+GRL++AQ Y+DK
Sbjct: 60 IKHLDGNNEAALECLRQAEELIQQEHADQAEIRSLVTWGNYAWVYYHLGRLSDAQIYVDK 119
Query: 121 VENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNYERAKTCFEKALEGNPENPEFNTG 180
V+ TCKKF+NP Y +E E+DCEEGW KCG ERAK CFEKALE P NPEF++G
Sbjct: 120 VKQTCKKFSNP--YSIEYSELDCEEGWTQLKCG--RNERAKVCFEKALEEKPNNPEFSSG 175
Query: 181 YAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYI 240
AI +Y LD + K FS VLK+A+ L+PD+ Y++VLL LKLQ +EAEGE+++
Sbjct: 176 LAIAMYHLD-----NHPEKQFSTDVLKQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFV 230
Query: 241 EEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMI 300
EEAL Q V + AAKFYRRKG +DKA+EL + LE+TP + +L+HQ+G CY+A++
Sbjct: 231 EEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYKAKVR 290
Query: 301 QIKEATNWQPRGQDRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHHRKAE 360
Q++ + G ++E ++ L Q A+ K + AY DLAE
Sbjct: 291 QMQNTGESEASG-NKEMIEALKQYAMDYSNKALEKGLNPLNAYSDLAEFL--------ET 341
Query: 361 EHFQKGLRMKIFEDQLKQEIHYHYGRFQEHHGKSQDKAITHYLKGLKIEKMSHSREKLLN 420
E +Q ++ D KQ+ H Y Q+++GKS+D A+ H L+GL I K S +E++ +
Sbjct: 342 ECYQTPFNKEV-PDAEKQQSHQRYCNLQKYNGKSEDTAVQHGLEGLSISKKSTDKEEIKD 400
Query: 421 ALEKLAKRCIHQNVRVVESVSLLGLIHKLKGEVSDALLCYERAL-RLAAD 469
+ +++ + QN L GLIHK G++ A CYE+ L RL D
Sbjct: 401 QPQNVSENLLPQN--APNYWYLQGLIHKQNGDLLQAAKCYEKELGRLLRD 448
>gi|72534658 interferon-induced protein with tetratricopeptide
repeats 3 [Homo sapiens]
Length = 490
Score = 391 bits (1004), Expect = e-109
Identities = 217/470 (46%), Positives = 301/470 (64%), Gaps = 23/470 (4%)
Query: 1 MSEESDGKLIEDSLIQLRCHFTWKLLIEAPEIPDLENRIWEEIQFLDTKYNVGIHNLLAY 60
MSE + L E L QL+CHFTW L E DLE+R+ +I+FL+T++ ++NLLAY
Sbjct: 1 MSEVTKNSL-EKILPQLKCHFTWNLFKEDSVSRDLEDRVCNQIEFLNTEFKATMYNLLAY 59
Query: 61 VKHLKGQNEEALVSLKKAEDLIQKEHANQADIRSLVTWGNFAWVYYHMGRLAEAQTYLDK 120
+KHL G NE AL L++AE+LIQ+EHA+QA+IRSLVTWGN+AWVYYH+GRL++AQ Y+DK
Sbjct: 60 IKHLDGNNEAALECLRQAEELIQQEHADQAEIRSLVTWGNYAWVYYHLGRLSDAQIYVDK 119
Query: 121 VENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNYERAKTCFEKALEGNPENPEFNTG 180
V+ TCKKF+NP Y +E E+DCEEGW KCG ERAK CFEKALE P NPEF++G
Sbjct: 120 VKQTCKKFSNP--YSIEYSELDCEEGWTQLKCG--RNERAKVCFEKALEEKPNNPEFSSG 175
Query: 181 YAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYI 240
AI +Y LD + K FS VLK+A+ L+PD+ Y++VLL LKLQ +EAEGE+++
Sbjct: 176 LAIAMYHLD-----NHPEKQFSTDVLKQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFV 230
Query: 241 EEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMI 300
EEAL Q V + AAKFYRRKG +DKA+EL + LE+TP + +L+HQ+G CY+A++
Sbjct: 231 EEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYKAKVR 290
Query: 301 QIKEATNWQPRGQDRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHHRKAE 360
Q++ + G ++E ++ L Q A+ K + AY DLAE
Sbjct: 291 QMQNTGESEASG-NKEMIEALKQYAMDYSNKALEKGLNPLNAYSDLAEFL--------ET 341
Query: 361 EHFQKGLRMKIFEDQLKQEIHYHYGRFQEHHGKSQDKAITHYLKGLKIEKMSHSREKLLN 420
E +Q ++ D KQ+ H Y Q+++GKS+D A+ H L+GL I K S +E++ +
Sbjct: 342 ECYQTPFNKEV-PDAEKQQSHQRYCNLQKYNGKSEDTAVQHGLEGLSISKKSTDKEEIKD 400
Query: 421 ALEKLAKRCIHQNVRVVESVSLLGLIHKLKGEVSDALLCYERAL-RLAAD 469
+ +++ + QN L GLIHK G++ A CYE+ L RL D
Sbjct: 401 QPQNVSENLLPQN--APNYWYLQGLIHKQNGDLLQAAKCYEKELGRLLRD 448
>gi|153082755 interferon-induced protein with tetratricopeptide
repeats 2 [Homo sapiens]
Length = 472
Score = 384 bits (985), Expect = e-106
Identities = 212/469 (45%), Positives = 297/469 (63%), Gaps = 17/469 (3%)
Query: 1 MSEESDGKLIEDSLIQLRCHFTWKLLIEAPEIPDLENRIWEEIQFLDTKYNVGIHNLLAY 60
MSE + L E SL QL+CHFTW L+ + D E++++ +F + ++ + NLLAY
Sbjct: 1 MSENNKNSL-ESSLRQLKCHFTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAY 59
Query: 61 VKHLKGQNEEALVSLKKAEDLIQKEHANQADIRSLVTWGNFAWVYYHMGRLAEAQTYLDK 120
+KHLKGQNE AL L+KAE+LIQ+EHA+QA+IRSLVTWGN+AWVYYHMGRL++ Q Y+DK
Sbjct: 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK 119
Query: 121 VENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNYERAKTCFEKALEGNPENPEFNTG 180
V++ C+KF++P YR+E PE+DCEEGW KCGG ERAK CFEKALE P+NPEF +G
Sbjct: 120 VKHVCEKFSSP--YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177
Query: 181 YAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDVYIRVLLALKL---QDEG-QEAEG 236
AI YRLD + + ++ L++A+RLNPD+ Y++VLLALKL ++EG +E EG
Sbjct: 178 LAIASYRLDNWPPSQN-----AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEG 232
Query: 237 EKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYR 296
EK +EEAL V + AAKFYRRK DKA+ELLK ALE P +A+LH Q+G CYR
Sbjct: 233 EKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292
Query: 297 AQMIQIKEATNWQPRGQ-DRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGH 355
A++ Q+ N + G + + L+ A+ +K LA +A
Sbjct: 293 AKVFQV---MNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349
Query: 356 HRKAEEHFQKGLRMKIFEDQLKQEIHYHYGRFQEHHGKSQDKAITHYLKGLKIEKMSHSR 415
+ AE +FQK K KQ +H YG FQ + K +DKAI H+++G+KI + S +
Sbjct: 350 YEDAEYYFQKEF-SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408
Query: 416 EKLLNALEKLAKRCIHQNVRVVESVSLLGLIHKLKGEVSDALLCYERAL 464
EK+ + L+K+AK + +N E++ +L + +L ++ A ER L
Sbjct: 409 EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457
>gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens]
Length = 1036
Score = 50.8 bits (120), Expect = 3e-06
Identities = 85/401 (21%), Positives = 141/401 (35%), Gaps = 110/401 (27%)
Query: 111 LAEAQTYLDKVENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNYERAKTCFEKALEG 170
LA A +E + + + +Y + V + G L G E AK C+ KA+E
Sbjct: 119 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG--RLEEAKACYLKAIET 176
Query: 171 NPENPEFNTGYAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPD--DVYIRVLLALKLQ 228
P +A+ L A G ++H ++AV L+P+ D YI
Sbjct: 177 QPN-------FAVAWSNLGCVFNAQGEIW-LAIHHFEKAVTLDPNFLDAYIN-------- 220
Query: 229 DEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLH 288
L ++ +A +F A Y R AL +P A +H
Sbjct: 221 ---------------LGNVLKEARIFDRAVAAYLR-------------ALSLSPNHAVVH 252
Query: 289 HQMGLCYRAQMIQIKEATNWQPRGQDRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAE 348
+ Y Q L+ LAI + + I L+ F AY +LA
Sbjct: 253 GNLACVYYEQ---------------------GLIDLAIDTYRRAIELQPHFPDAYCNLAN 291
Query: 349 TYAEIGHHRKAEEHFQKGLRM-------------------------KIFEDQLK-----Q 378
E G +AE+ + LR+ +++ L+
Sbjct: 292 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 351
Query: 379 EIHYHYGRFQEHHGKSQDKAITHYLKGLKIE-KMSHSREKLLNALEKLA---------KR 428
H + + GK Q+ A+ HY + ++I + + + N L+++ R
Sbjct: 352 AAHSNLASVLQQQGKLQE-ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 410
Query: 429 CIHQNVRVVESVSLLGLIHKLKGEVSDALLCYERALRLAAD 469
I N ++ S L IHK G + +A+ Y AL+L D
Sbjct: 411 AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 451
>gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens]
Length = 1046
Score = 50.8 bits (120), Expect = 3e-06
Identities = 85/401 (21%), Positives = 141/401 (35%), Gaps = 110/401 (27%)
Query: 111 LAEAQTYLDKVENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNYERAKTCFEKALEG 170
LA A +E + + + +Y + V + G L G E AK C+ KA+E
Sbjct: 129 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG--RLEEAKACYLKAIET 186
Query: 171 NPENPEFNTGYAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPD--DVYIRVLLALKLQ 228
P +A+ L A G ++H ++AV L+P+ D YI
Sbjct: 187 QPN-------FAVAWSNLGCVFNAQGEIW-LAIHHFEKAVTLDPNFLDAYIN-------- 230
Query: 229 DEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLH 288
L ++ +A +F A Y R AL +P A +H
Sbjct: 231 ---------------LGNVLKEARIFDRAVAAYLR-------------ALSLSPNHAVVH 262
Query: 289 HQMGLCYRAQMIQIKEATNWQPRGQDRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAE 348
+ Y Q L+ LAI + + I L+ F AY +LA
Sbjct: 263 GNLACVYYEQ---------------------GLIDLAIDTYRRAIELQPHFPDAYCNLAN 301
Query: 349 TYAEIGHHRKAEEHFQKGLRM-------------------------KIFEDQLK-----Q 378
E G +AE+ + LR+ +++ L+
Sbjct: 302 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 361
Query: 379 EIHYHYGRFQEHHGKSQDKAITHYLKGLKIE-KMSHSREKLLNALEKLA---------KR 428
H + + GK Q+ A+ HY + ++I + + + N L+++ R
Sbjct: 362 AAHSNLASVLQQQGKLQE-ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 420
Query: 429 CIHQNVRVVESVSLLGLIHKLKGEVSDALLCYERALRLAAD 469
I N ++ S L IHK G + +A+ Y AL+L D
Sbjct: 421 AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 461
>gi|170784867 tetratricopeptide repeat domain 13 isoform a [Homo
sapiens]
Length = 860
Score = 48.9 bits (115), Expect = 1e-05
Identities = 67/276 (24%), Positives = 107/276 (38%), Gaps = 30/276 (10%)
Query: 119 DKVENTCKKFANPSRYRMECPEVDCEEGWALAKC--GGKNYERAKTCFEKALEGNPENPE 176
+K+ + K A R+ E A+A G Y+ A F L+ P+
Sbjct: 119 EKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVS 178
Query: 177 FNTGYAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDVYIRVLLALKLQDEGQEAEG 236
G I K +N +L L R + L PD + A L G+
Sbjct: 179 AIYGRGIAY---GKKGLHDIKNAELALFELSRVITLEPDRPEVFEQRAEILSPLGR---- 231
Query: 237 EKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYR 296
I EA+ ++ +A Q +A+ YR +G++ E A E S L+ +
Sbjct: 232 ---INEAVNDLT-KAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIA-- 285
Query: 297 AQMIQIKEATNWQPRGQDRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHH 356
+ + + RG L++ AI F++ + K F AY L + Y E+G+
Sbjct: 286 ----MLYKGLTFFHRG--------LLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNF 333
Query: 357 RKAEEHFQKGLRMK---IFEDQLKQEIHYHYGRFQE 389
A E FQK L + + QL+ + YH+G QE
Sbjct: 334 EAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQE 369
>gi|225735593 RNA polymerase II associated protein 3 isoform 2 [Homo
sapiens]
Length = 631
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 102 AWVYYHMGRLAEAQTYLDKVENTCKKFANPSRYRMECPEVDCEEGWALAKCGGK-----N 156
AW + R+ + LDK ++T + + S + VD ++ L + G K
Sbjct: 92 AWAKLDVDRILDE---LDKDDSTHESLSQESESEEDGIHVDSQKALVLKEKGNKYFKQGK 148
Query: 157 YERAKTCFEKALEGNPENPEFNTGYAITVYRLDKFNTA-SGRNKAFSLH 204
Y+ A C+ K ++ +P NP T A +RL KF A S N A +L+
Sbjct: 149 YDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALN 197
>gi|225735591 RNA polymerase II associated protein 3 isoform 1 [Homo
sapiens]
Length = 665
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 102 AWVYYHMGRLAEAQTYLDKVENTCKKFANPSRYRMECPEVDCEEGWALAKCGGK-----N 156
AW + R+ + LDK ++T + + S + VD ++ L + G K
Sbjct: 92 AWAKLDVDRILDE---LDKDDSTHESLSQESESEEDGIHVDSQKALVLKEKGNKYFKQGK 148
Query: 157 YERAKTCFEKALEGNPENPEFNTGYAITVYRLDKFNTA-SGRNKAFSLH 204
Y+ A C+ K ++ +P NP T A +RL KF A S N A +L+
Sbjct: 149 YDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALN 197
>gi|17149828 NMDA receptor regulated 1 [Homo sapiens]
Length = 866
Score = 42.0 bits (97), Expect = 0.001
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 252 YVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMIQIKEATNWQPR 311
+V Y A+ Y + G ALE + A+E+TPT L Y+ IKEA W
Sbjct: 375 WVQYYLAQHYDKIGQPSIALEYINTAIESTPTLIELFLVKAKIYK-HAGNIKEAARWMDE 433
Query: 312 GQDRETVDRLVQLAICKFE-KTIMLKRTFEM 341
Q +T DR + K+ K ++K EM
Sbjct: 434 AQALDTADRFINSKCAKYMLKANLIKEAEEM 464
Score = 33.5 bits (75), Expect = 0.43
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 18/162 (11%)
Query: 158 ERAKTCFEKALEGNPEN---PEFNTGYAITVYRLDKFNTASGRNKAFSLHVLKRAVRL-N 213
E+ K C +K L N P FNT ++Y+ DK A ++ RL N
Sbjct: 304 EKFKECLDKFLRMNFSKGCPPVFNT--LRSLYK-DKEKVAIIEELVVGYETSLKSCRLFN 360
Query: 214 PDD----------VYIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRR 263
P+D ++++ LA GQ + +YI A+ S + +F AK Y+
Sbjct: 361 PNDDGKEEPPTTLLWVQYYLAQHYDKIGQPSIALEYINTAIESTPTLIELFLVKAKIYKH 420
Query: 264 KGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMIQIKEA 305
G++ +A + A F++ + Y + IKEA
Sbjct: 421 AGNIKEAARWMDEAQALDTADRFINSKCAK-YMLKANLIKEA 461
>gi|170784869 tetratricopeptide repeat domain 13 isoform b [Homo
sapiens]
Length = 807
Score = 41.6 bits (96), Expect = 0.002
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 18/153 (11%)
Query: 240 IEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQM 299
I EA+ ++ +A Q +A+ YR +G++ E A E S L+ +
Sbjct: 179 INEAVNDLT-KAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIA----- 232
Query: 300 IQIKEATNWQPRGQDRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHHRKA 359
+ + + RG L++ AI F++ + K F AY L + Y E+G+ A
Sbjct: 233 -MLYKGLTFFHRG--------LLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAA 283
Query: 360 EEHFQKGLRMK---IFEDQLKQEIHYHYGRFQE 389
E FQK L + + QL+ + YH+G QE
Sbjct: 284 TESFQKALLLNQNHVQTLQLRGMMLYHHGSLQE 316
>gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Homo
sapiens]
Length = 864
Score = 40.0 bits (92), Expect = 0.005
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 252 YVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMIQIKEATNWQPR 311
+V + A+ + + G AL+ + A+ +TPT L + Y+ + +KEA W
Sbjct: 375 WVQYFLAQHFDKLGQYSLALDYINAAIASTPTLIELFYMKAKIYK-HIGNLKEAAKWMDE 433
Query: 312 GQDRETVDRLVQLAICKFE-KTIMLKRTFEM 341
Q +T DR + K+ + M+K EM
Sbjct: 434 AQSLDTADRFINSKCAKYMLRANMIKEAEEM 464
Score = 29.3 bits (64), Expect = 8.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 353 IGHHRKAEEHFQKGLRMKIFEDQLKQEIHYHYGRFQEHHGKSQDKAITHYLKGLKIEK 410
+G +A E +KGLR + +K + +H + K D+AI Y LK++K
Sbjct: 59 LGKKEEAYEFVRKGLR-----NDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDK 111
Score = 29.3 bits (64), Expect = 8.1
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 217 VYIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKM 276
++++ LA GQ + YI A+ S + +F AK Y+ G++ +A + +
Sbjct: 374 LWVQYFLAQHFDKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIGNLKEAAKWMDE 433
Query: 277 ALETTPTSAFLHHQMGLCYRAQMIQIKEA 305
A F++ + Y + IKEA
Sbjct: 434 AQSLDTADRFINSKCAK-YMLRANMIKEA 461
>gi|54607135 translocase of outer mitochondrial membrane 70 homolog
A [Homo sapiens]
Length = 608
Score = 38.5 bits (88), Expect = 0.013
Identities = 41/195 (21%), Positives = 81/195 (41%), Gaps = 13/195 (6%)
Query: 104 VYYHMGRLAEAQTYLDKVENTCKKFANPSRYRMECPEVDCEEGWALAKCG--GKNYERAK 161
VY+H G+L + LD+VE F R R E ++ +AL + G N + +
Sbjct: 403 VYHHRGQL---KILLDQVEEAVADFDECIRLRPESALAQAQKCFALYRQAYTGNNSSQIQ 459
Query: 162 TCFEKALEGNPENPEFNTGYAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDV--YI 219
+ E + P GYA+ L ++ + + + L PD+ Y+
Sbjct: 460 AAMKGFEEVIKKFPRCAEGYALYAQALTDQQQFGKADEMYD-----KCIDLEPDNATTYV 514
Query: 220 RVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALE 279
L L+LQ + G + I +A+ + + ++ ++G+++KA+++ A+
Sbjct: 515 HKGL-LQLQWKQDLDRGLELISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAIN 573
Query: 280 TTPTSAFLHHQMGLC 294
+ + H LC
Sbjct: 574 LAKSEMEMAHLYSLC 588
>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
[Homo sapiens]
Length = 1354
Score = 37.7 bits (86), Expect = 0.023
Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 298 QMIQIKEATNWQPRGQDRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHHR 357
Q+ I EA + RG D E + L E+ LK E + E + H
Sbjct: 605 QLQAILEAER-RDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE 663
Query: 358 KAEEHFQKGL--RMKIFEDQLKQEIHYHY---GRFQEHHGKSQD-KAITHYLKGLKIEKM 411
K + + + L ++K + +L+QE++ H R + H ++ K++ K+++
Sbjct: 664 KEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKARLTDKHQSIEEAKSVAMCEMEKKLKEE 723
Query: 412 SHSREKLLNALEKLAKRCIHQNVRVVESVS----LLGLIHKLKGEVSDALLCYER 462
+REK N + ++ K+C +V + +S L G +++ EV + L E+
Sbjct: 724 REAREKAENRVVQIEKQCSMLDVDLKQSQQKLEHLTGNKERMEDEVKNLTLQLEQ 778
>gi|7661950 SH2 domain binding protein 1 [Homo sapiens]
Length = 1173
Score = 37.0 bits (84), Expect = 0.039
Identities = 67/255 (26%), Positives = 96/255 (37%), Gaps = 46/255 (18%)
Query: 146 GWALAKCGGKNYERAKTCFEKALEGNPENP-EFNTGYAITVYRLDKFNTASGRNKAFSLH 204
G A K+Y A ++KAL NP P E G +L+K A AFS
Sbjct: 168 GKACISFNKKDYRGALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKA---RLAFS-- 222
Query: 205 VLKRAVRLNPDDVYIRVLLALKLQDEGQEAE----GEKYIEEALTSISSQAYVFQYAAKF 260
RA+ LN V V LA+ L+ +EA+ G + + A T S V + A
Sbjct: 223 ---RALELNSKCVGALVGLAV-LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANH 278
Query: 261 YRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMIQIKEATNWQPRGQDRETVDR 320
+ K K L A T A Q CY Q+ + + Q E D+
Sbjct: 279 FFFKKDYSKVQHLALHAFHNTEVEAM---QAESCY-----QLARSFHVQ------EDYDQ 324
Query: 321 LVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHHRKAEEHFQKGLR--------MKIF 372
Q ++ T +F + + L + Y G A + F+K L+ MKI
Sbjct: 325 AFQY---YYQATQFASSSFVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKIL 381
Query: 373 -------EDQLKQEI 380
EDQ K++I
Sbjct: 382 GSLYAASEDQEKRDI 396
>gi|83415184 transmembrane and tetratricopeptide repeat containing 1
[Homo sapiens]
Length = 774
Score = 37.0 bits (84), Expect = 0.039
Identities = 69/335 (20%), Positives = 139/335 (41%), Gaps = 37/335 (11%)
Query: 160 AKTCFEKALEGNPENPE--FNTGYAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDV 217
AK +++AL+ +P++ FN G + S K ++ +LK +++ P+
Sbjct: 425 AKMYYQRALQLHPQHNRALFNLGNLLK----------SQEKKEEAITLLKDSIKYGPEFA 474
Query: 218 YIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMA 277
LA L ++ + E E+ + + + + + F G +KA+ + A
Sbjct: 475 DAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQA 534
Query: 278 LETTPTSAFLHHQMGLCYRAQMIQIKEATNWQPR----GQDRETVDRLVQL--------- 324
++ +P+ +G YR+ + + A W R E + L L
Sbjct: 535 IKLSPSHHVAMVNLGRLYRS-LGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEE 593
Query: 325 AICKFEKTIMLKRTFEMAYVDLAETYAEIGHHRKAEEHFQKGLRMKIFEDQLKQEIHYHY 384
A+ +++ L+ + + LA+ A +G ++AE+ + + + + + Y
Sbjct: 594 ALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIY 653
Query: 385 GRFQEHHGKSQ---DKAITHYLKGLKI------EKMSHSREK-LLNALEKLAKRCIHQNV 434
+ QE+H K+ DKA+ K K+ K + RE+ LL+ + + + N
Sbjct: 654 SK-QENHDKALDAIDKALQLKPKDPKVISELFFTKGNQLREQNLLDKAFESYRVAVQLNP 712
Query: 435 RVVESVSLLGLIHKLKGEVSDALLCYERALRLAAD 469
++ +G I +KG+ A YERAL+L D
Sbjct: 713 DQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPD 747
>gi|7662078 tetratricopeptide repeat domain 37 [Homo sapiens]
Length = 1564
Score = 35.4 bits (80), Expect = 0.11
Identities = 43/196 (21%), Positives = 82/196 (41%), Gaps = 31/196 (15%)
Query: 240 IEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQM 299
++E+ S ++ + K +R K +V + LK+ ++ S +Q LC +
Sbjct: 299 LKESPVCTSGWYHLAEAQVKMHRPKEAVLSCSQALKI-VDNLGASGNSLYQRNLCLHLKA 357
Query: 300 IQIKEATNWQPRGQDRETVDRLVQ------LAICK---------FEKTIMLKRTFEMAYV 344
+ + +++ + T+D++ L + K F++ + +Y
Sbjct: 358 EALIKLSDYDSSEEAIRTLDQISDADNIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYP 417
Query: 345 DLAETYA--EIGHHRK-----AEEHFQKGLRMKIFEDQLKQEIHYHYGR----FQEHHGK 393
DLAE +A + H K AE+ FQ+ L +D E HY G E K
Sbjct: 418 DLAEVHALEALIHFTKKDYLQAEKCFQRALE----KDTEVAEYHYQLGLTYWFMGEETRK 473
Query: 394 SQDKAITHYLKGLKIE 409
+ KA+TH+LK +++
Sbjct: 474 DKTKALTHFLKAARLD 489
Score = 33.5 bits (75), Expect = 0.43
Identities = 23/75 (30%), Positives = 36/75 (48%)
Query: 221 VLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALET 280
VL +L +++G E K +E+ L+S A V A + K +A + + ALE
Sbjct: 390 VLKSLAYRNKGSFDEAAKIMEDLLSSYPDLAEVHALEALIHFTKKDYLQAEKCFQRALEK 449
Query: 281 TPTSAFLHHQMGLCY 295
A H+Q+GL Y
Sbjct: 450 DTEVAEYHYQLGLTY 464
Score = 30.4 bits (67), Expect = 3.7
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 155 KNYERAKTCFEKALEGNPENPEFNTGYAITVYRLDKFNTASGRNKAFSLHVLKRA 209
K+Y +A+ CF++ALE + E E++ +T + + + T + KA + H LK A
Sbjct: 434 KDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGE-ETRKDKTKALT-HFLKAA 486
>gi|118766328 transmembrane and tetratricopeptide repeat containing
4 isoform 2 [Homo sapiens]
Length = 741
Score = 35.0 bits (79), Expect = 0.15
Identities = 63/268 (23%), Positives = 106/268 (39%), Gaps = 30/268 (11%)
Query: 38 RIWEEIQFLDTKYNVGIHNLLAYVKHLKGQNEEALVSLKKAEDLIQKEHANQADIRSLVT 97
R + E L+ KY ++NL LK +NE L++AE+L+ Q D +
Sbjct: 503 RYYREAVRLNPKYVHAMNNL---GNILKERNE-----LQEAEELLSLAVQIQPDFAA--- 551
Query: 98 WGNFAWVYYHMGRLAEAQTYLDKVENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNY 157
AW+ L Q L + E + + ++R + P DC +
Sbjct: 552 ----AWM-----NLGIVQNSLKRFEAAEQSYRTAIKHRRKYP--DCYYNLGRLYADLNRH 600
Query: 158 ERAKTCFEKALEGNPENPEFNTGYAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDV 217
A + A PE+ + + + LD NT N A + V + A+ L P+D
Sbjct: 601 VDALNAWRNATVLKPEH---SLAWNNMIILLD--NTG---NLAQAEAVGREALELIPNDH 652
Query: 218 YIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMA 277
+ LA L + E E +A+ + + A A Y R G +D A + +++
Sbjct: 653 SLMFSLANVLGKSQKYKESEALFLKAIKANPNAASYHGNLAVLYHRWGHLDLAKKHYEIS 712
Query: 278 LETTPTSAFLHHQMGLCYRAQMIQIKEA 305
L+ PT++ GL R + K+A
Sbjct: 713 LQLDPTASGTKENYGLLRRKLELMQKKA 740
>gi|118766330 transmembrane and tetratricopeptide repeat containing
4 isoform 1 [Homo sapiens]
Length = 760
Score = 35.0 bits (79), Expect = 0.15
Identities = 63/268 (23%), Positives = 106/268 (39%), Gaps = 30/268 (11%)
Query: 38 RIWEEIQFLDTKYNVGIHNLLAYVKHLKGQNEEALVSLKKAEDLIQKEHANQADIRSLVT 97
R + E L+ KY ++NL LK +NE L++AE+L+ Q D +
Sbjct: 522 RYYREAVRLNPKYVHAMNNL---GNILKERNE-----LQEAEELLSLAVQIQPDFAA--- 570
Query: 98 WGNFAWVYYHMGRLAEAQTYLDKVENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNY 157
AW+ L Q L + E + + ++R + P DC +
Sbjct: 571 ----AWM-----NLGIVQNSLKRFEAAEQSYRTAIKHRRKYP--DCYYNLGRLYADLNRH 619
Query: 158 ERAKTCFEKALEGNPENPEFNTGYAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDV 217
A + A PE+ + + + LD NT N A + V + A+ L P+D
Sbjct: 620 VDALNAWRNATVLKPEH---SLAWNNMIILLD--NTG---NLAQAEAVGREALELIPNDH 671
Query: 218 YIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMA 277
+ LA L + E E +A+ + + A A Y R G +D A + +++
Sbjct: 672 SLMFSLANVLGKSQKYKESEALFLKAIKANPNAASYHGNLAVLYHRWGHLDLAKKHYEIS 731
Query: 278 LETTPTSAFLHHQMGLCYRAQMIQIKEA 305
L+ PT++ GL R + K+A
Sbjct: 732 LQLDPTASGTKENYGLLRRKLELMQKKA 759
>gi|24308141 small glutamine-rich tetratricopeptide repeat
(TPR)-containing, beta [Homo sapiens]
Length = 304
Score = 34.7 bits (78), Expect = 0.19
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 104 VYYHMGRLAEAQT--YLDKVENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNYERAK 161
VYY A+++ Y D +++ K A S+Y + LA +E A
Sbjct: 120 VYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRM------GLALTALNKFEEAV 173
Query: 162 TCFEKALEGNPENPEFNTGYAITVYRLDKFNTASGRNKAFSL 203
T ++KAL+ +PEN + + I +L + ++ +G +F +
Sbjct: 174 TSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDM 215
>gi|25952122 Bardet-Biedl syndrome 4 [Homo sapiens]
Length = 519
Score = 34.3 bits (77), Expect = 0.25
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 196 GRNKAFSLHVLKRAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQ 255
G++KA ++ V A +LN D I L + Q + + + AL +++ +
Sbjct: 115 GKHKA-AIEVYNEAAKLNQKDWEISHNLGVCYIYLKQFNKAQDQLHNAL-NLNRHDLTYI 172
Query: 256 YAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCY 295
K + +G +DKA+E+ K A+E +P + L +GL Y
Sbjct: 173 MLGKIHLLEGDLDKAIEVYKKAVEFSPENTELLTTLGLLY 212
Score = 32.3 bits (72), Expect = 0.96
Identities = 21/94 (22%), Positives = 40/94 (42%)
Query: 202 SLHVLKRAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFY 261
++ V K+AV +P++ + L L G + +++ ALT + A
Sbjct: 187 AIEVYKKAVEFSPENTELLTTLGLLYLQLGIYQKAFEHLGNALTYDPTNYKAILAAGSMM 246
Query: 262 RRKGSVDKALELLKMALETTPTSAFLHHQMGLCY 295
+ G D AL ++ P S L + +G+C+
Sbjct: 247 QTHGDFDVALTKYRVVACAVPESPPLWNNIGMCF 280
>gi|239756104 PREDICTED: tetratricopeptide repeat domain 6 [Homo
sapiens]
Length = 1614
Score = 33.5 bits (75), Expect = 0.43
Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 50/224 (22%)
Query: 261 YRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMIQIKEATNWQPRGQDRETVDR 320
Y G ALE K A + T+ L H +C+ ++ + +EA N+
Sbjct: 1280 YVELGQYGFALEDFKQAALISRTNGSLCHATAMCHH-RINEFEEAVNF------------ 1326
Query: 321 LVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHH---RKAEEHFQKGLRMKIFEDQLK 377
F + + F AYV +Y E GH ++A++ F K L I +K
Sbjct: 1327 --------FTWALKINPCFLDAYVGRGNSYMEYGHDEATKQAQKDFLKALH--INPAYIK 1376
Query: 378 QEIHYHYGRFQEHHGKSQDKAITHYLKGLKIEKMSHSREKLLNALEKLAKRCIH------ 431
I + Y + GK Q KA H+ + + ++ A E A C+
Sbjct: 1377 ARISFGYN--LQAQGKFQ-KAWNHFTIAIDTDPKNYL------AYEGRAVVCLQMGNNFA 1427
Query: 432 --QNVRVVESVSLL-------GLIHKLKGEVSDALLCYERALRL 466
Q++ +S G+IH+ G +A+ Y+ A+ L
Sbjct: 1428 AMQDINAAMKISTTAEFLTNRGVIHEFMGHKQNAMKDYQDAITL 1471
Score = 29.6 bits (65), Expect = 6.2
Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 22/161 (13%)
Query: 208 RAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSV 267
+A+ +NP + R+ LQ +G+ + + A+ + ++ A + G+
Sbjct: 1366 KALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNN 1425
Query: 268 DKALELLKMALETTPTSAFLHHQMGLCYRAQMIQIKEATNWQPRGQDRETVDRLVQLAIC 327
A++ + A++ + T+ FL TN RG E + Q A+
Sbjct: 1426 FAAMQDINAAMKISTTAEFL------------------TN---RGVIHEFMGHK-QNAMK 1463
Query: 328 KFEKTIMLKRTFEMAYVDLAETYAEIGHHRKAEEHFQKGLR 368
++ I L + +AY + Y +A ++F K L+
Sbjct: 1464 DYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALK 1504
Score = 29.3 bits (64), Expect = 8.1
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 13/144 (9%)
Query: 155 KNYERAKTCFEKALEGNPENPEFNTGYAITVYR-LDKFNTASGRNKAFSLHVLKRAVRLN 213
K YE + + + P F +YR L K +A ++ L+R + L
Sbjct: 896 KYYESEVKILTEEINDKTKYPAFAYCRRGAIYRKLGKLQSA--------MNDLQRVILLE 947
Query: 214 PD--DVYIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKAL 271
P + Y L QD+ EA + +++AY+ + A+ YR K + A+
Sbjct: 948 PLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSK--AEIYRGKKDITLAI 1005
Query: 272 ELLKMALETTPTSAFLHHQMGLCY 295
A+++TPT A ++ + G Y
Sbjct: 1006 LNYTQAIKSTPTDADIYFRRGEMY 1029
>gi|239750633 PREDICTED: tetratricopeptide repeat domain 6 [Homo
sapiens]
Length = 1614
Score = 33.5 bits (75), Expect = 0.43
Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 50/224 (22%)
Query: 261 YRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMIQIKEATNWQPRGQDRETVDR 320
Y G ALE K A + T+ L H +C+ ++ + +EA N+
Sbjct: 1280 YVELGQYGFALEDFKQAALISRTNGSLCHATAMCHH-RINEFEEAVNF------------ 1326
Query: 321 LVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHH---RKAEEHFQKGLRMKIFEDQLK 377
F + + F AYV +Y E GH ++A++ F K L I +K
Sbjct: 1327 --------FTWALKINPCFLDAYVGRGNSYMEYGHDEATKQAQKDFLKALH--INPAYIK 1376
Query: 378 QEIHYHYGRFQEHHGKSQDKAITHYLKGLKIEKMSHSREKLLNALEKLAKRCIH------ 431
I + Y + GK Q KA H+ + + ++ A E A C+
Sbjct: 1377 ARISFGYN--LQAQGKFQ-KAWNHFTIAIDTDPKNYL------AYEGRAVVCLQMGNNFA 1427
Query: 432 --QNVRVVESVSLL-------GLIHKLKGEVSDALLCYERALRL 466
Q++ +S G+IH+ G +A+ Y+ A+ L
Sbjct: 1428 AMQDINAAMKISTTAEFLTNRGVIHEFMGHKQNAMKDYQDAITL 1471
Score = 29.6 bits (65), Expect = 6.2
Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 22/161 (13%)
Query: 208 RAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSV 267
+A+ +NP + R+ LQ +G+ + + A+ + ++ A + G+
Sbjct: 1366 KALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNN 1425
Query: 268 DKALELLKMALETTPTSAFLHHQMGLCYRAQMIQIKEATNWQPRGQDRETVDRLVQLAIC 327
A++ + A++ + T+ FL TN RG E + Q A+
Sbjct: 1426 FAAMQDINAAMKISTTAEFL------------------TN---RGVIHEFMGHK-QNAMK 1463
Query: 328 KFEKTIMLKRTFEMAYVDLAETYAEIGHHRKAEEHFQKGLR 368
++ I L + +AY + Y +A ++F K L+
Sbjct: 1464 DYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALK 1504
Score = 29.3 bits (64), Expect = 8.1
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 13/144 (9%)
Query: 155 KNYERAKTCFEKALEGNPENPEFNTGYAITVYR-LDKFNTASGRNKAFSLHVLKRAVRLN 213
K YE + + + P F +YR L K +A ++ L+R + L
Sbjct: 896 KYYESEVKILTEEINDKTKYPAFAYCRRGAIYRKLGKLQSA--------MNDLQRVILLE 947
Query: 214 PD--DVYIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKAL 271
P + Y L QD+ EA + +++AY+ + A+ YR K + A+
Sbjct: 948 PLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSK--AEIYRGKKDITLAI 1005
Query: 272 ELLKMALETTPTSAFLHHQMGLCY 295
A+++TPT A ++ + G Y
Sbjct: 1006 LNYTQAIKSTPTDADIYFRRGEMY 1029
>gi|239744942 PREDICTED: chromosome 14 open reading frame 25 [Homo
sapiens]
Length = 1614
Score = 33.5 bits (75), Expect = 0.43
Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 50/224 (22%)
Query: 261 YRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMIQIKEATNWQPRGQDRETVDR 320
Y G ALE K A + T+ L H +C+ ++ + +EA N+
Sbjct: 1280 YVELGQYGFALEDFKQAALISRTNGSLCHATAMCHH-RINEFEEAVNF------------ 1326
Query: 321 LVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHH---RKAEEHFQKGLRMKIFEDQLK 377
F + + F AYV +Y E GH ++A++ F K L I +K
Sbjct: 1327 --------FTWALKINPCFLDAYVGRGNSYMEYGHDEATKQAQKDFLKALH--INPAYIK 1376
Query: 378 QEIHYHYGRFQEHHGKSQDKAITHYLKGLKIEKMSHSREKLLNALEKLAKRCIH------ 431
I + Y + GK Q KA H+ + + ++ A E A C+
Sbjct: 1377 ARISFGYN--LQAQGKFQ-KAWNHFTIAIDTDPKNYL------AYEGRAVVCLQMGNNFA 1427
Query: 432 --QNVRVVESVSLL-------GLIHKLKGEVSDALLCYERALRL 466
Q++ +S G+IH+ G +A+ Y+ A+ L
Sbjct: 1428 AMQDINAAMKISTTAEFLTNRGVIHEFMGHKQNAMKDYQDAITL 1471
Score = 29.6 bits (65), Expect = 6.2
Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 22/161 (13%)
Query: 208 RAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSV 267
+A+ +NP + R+ LQ +G+ + + A+ + ++ A + G+
Sbjct: 1366 KALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNN 1425
Query: 268 DKALELLKMALETTPTSAFLHHQMGLCYRAQMIQIKEATNWQPRGQDRETVDRLVQLAIC 327
A++ + A++ + T+ FL TN RG E + Q A+
Sbjct: 1426 FAAMQDINAAMKISTTAEFL------------------TN---RGVIHEFMGHK-QNAMK 1463
Query: 328 KFEKTIMLKRTFEMAYVDLAETYAEIGHHRKAEEHFQKGLR 368
++ I L + +AY + Y +A ++F K L+
Sbjct: 1464 DYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALK 1504
Score = 29.3 bits (64), Expect = 8.1
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 13/144 (9%)
Query: 155 KNYERAKTCFEKALEGNPENPEFNTGYAITVYR-LDKFNTASGRNKAFSLHVLKRAVRLN 213
K YE + + + P F +YR L K +A ++ L+R + L
Sbjct: 896 KYYESEVKILTEEINDKTKYPAFAYCRRGAIYRKLGKLQSA--------MNDLQRVILLE 947
Query: 214 PD--DVYIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKAL 271
P + Y L QD+ EA + +++AY+ + A+ YR K + A+
Sbjct: 948 PLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSK--AEIYRGKKDITLAI 1005
Query: 272 ELLKMALETTPTSAFLHHQMGLCY 295
A+++TPT A ++ + G Y
Sbjct: 1006 LNYTQAIKSTPTDADIYFRRGEMY 1029
>gi|222418587 hypothetical protein LOC57495 [Homo sapiens]
Length = 1742
Score = 33.1 bits (74), Expect = 0.56
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 29/165 (17%)
Query: 234 AEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSV--DKALELLKMALETT-------PTS 284
AE EK +E I +F+ A K KG + +A L A+E T
Sbjct: 194 AENEKTWQEISDEIKK---IFKAAVKLLHEKGKMKHSQAKRYLFSAIEDEFDFALGKQTP 250
Query: 285 AFLHHQMGLCYRAQMIQIK------------EATNWQPRG-QDRETVDRLVQLAICKFEK 331
AFL + +CY ++ I+ + T +PR +D E ++L++L +F
Sbjct: 251 AFL--KKCVCYIRKIANIERFVKIPEMGKYMDITGTEPRIIRDPEAQEKLIKLRD-EFIP 307
Query: 332 TIMLKRTFEMAYVDLAETYAEIGHHRKAEEHFQKGLRMKIFEDQL 376
TI+ + Y + ++G+ ++ E H+ +GL + +ED +
Sbjct: 308 TIVASSNLRV-YTSVTHCDMKLGYSQEIENHYIEGLGKQFYEDMI 351
>gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]
Length = 2481
Score = 32.3 bits (72), Expect = 0.96
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 328 KFEKTIMLKRTFEMAYVDLAETYAEIGHHRKAEEHFQKGLRMKIFEDQLKQEIHYHYGRF 387
K K + KR AY +L Y H+R+ +F K + + +L QE+
Sbjct: 382 KIAKDLGNKREEARAYSNLGSAY----HYRR---NFDKAMSYHNYVLELAQELMEKAIEM 434
Query: 388 QEHHGKSQDKAITHYLKGLK-IEKMSHSREKLLNALEKLAKRCIHQNVRVVESVSLLGLI 446
+ + G + H + ++ +E+ E+ L E L R S LG+I
Sbjct: 435 RAYAG------LGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRAS-----SNLGII 483
Query: 447 HKLKGEVSDALLCYERALRLAADLN 471
H++KG+ AL ++ L +A +L+
Sbjct: 484 HQMKGDYDTALKLHKTHLCIAQELS 508
Score = 31.6 bits (70), Expect = 1.6
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 19/130 (14%)
Query: 342 AYVDLAETYAEIGHHRKAEEHFQKGLRMKIFEDQLKQEIHYHYGRFQEHHGK-SQDKAIT 400
AY ++ Y +G + +A ++ ++ L++ + + + H + + D+A+
Sbjct: 516 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQ 575
Query: 401 HYLKGLKIEKMSHSREKLLNALEKLAKRCIHQNVRVVESVSLLGLIHKLKGEVSDALLCY 460
HY L I + + AL S LG H +GE A Y
Sbjct: 576 HYQNHLNIARELRDIQSEARAL------------------SNLGNFHCSRGEYVQAAPYY 617
Query: 461 ERALRLAADL 470
E+ LRLA DL
Sbjct: 618 EQYLRLAPDL 627
>gi|74271826 glutamine synthetase [Homo sapiens]
Length = 373
Score = 32.3 bits (72), Expect = 0.96
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 232 QEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQM 291
+E G KYIEEA+ +S + QY + Y KG +D A L ET+ + F
Sbjct: 262 REENGLKYIEEAIEKLSKR---HQYHIRAYDPKGGLDNARRLTGFH-ETSNINDF---SA 314
Query: 292 GLCYRAQMIQIKEATNWQPRG 312
G+ R+ I+I + +G
Sbjct: 315 GVANRSASIRIPRTVGQEKKG 335
>gi|74271837 glutamine synthetase [Homo sapiens]
Length = 373
Score = 32.3 bits (72), Expect = 0.96
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 232 QEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQM 291
+E G KYIEEA+ +S + QY + Y KG +D A L ET+ + F
Sbjct: 262 REENGLKYIEEAIEKLSKR---HQYHIRAYDPKGGLDNARRLTGFH-ETSNINDF---SA 314
Query: 292 GLCYRAQMIQIKEATNWQPRG 312
G+ R+ I+I + +G
Sbjct: 315 GVANRSASIRIPRTVGQEKKG 335
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,872,792
Number of Sequences: 37866
Number of extensions: 722772
Number of successful extensions: 2279
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2107
Number of HSP's gapped (non-prelim): 175
length of query: 474
length of database: 18,247,518
effective HSP length: 106
effective length of query: 368
effective length of database: 14,233,722
effective search space: 5238009696
effective search space used: 5238009696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.