Search of human proteins with 58197554

Search of human proteins with 58197554

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|58197554 transmembrane protein 201 isoform 2 [Homo sapiens]
         (392 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|58197554 transmembrane protein 201 isoform 2 [Homo sapiens]        816   0.0  
gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens]       806   0.0  
gi|41281453 serine/threonine kinase 2 [Homo sapiens]                   35   0.15 
gi|9955968 ATP-binding cassette, sub-family B (MDR/TAP), member ...    32   0.76 
gi|9955966 ATP-binding cassette, sub-family B (MDR/TAP), member ...    32   0.76 
gi|45243524 ATP-binding cassette, sub-family B (MDR/TAP), member...    32   0.76 
gi|45439359 triple functional domain (PTPRF interacting) [Homo s...    32   0.76 
gi|126362971 serine/threonine kinase 10 [Homo sapiens]                 32   1.3  
gi|4507923 WNT1 inducible signaling pathway protein 2 precursor ...    31   1.7  
gi|101943240 general transcription factor IIIC, polypeptide 1, a...    31   1.7  
gi|40354197 THAP domain containing 11 [Homo sapiens]                   30   2.9  
gi|4758024 coilin [Homo sapiens]                                       30   2.9  
gi|110611172 amnionless protein precursor [Homo sapiens]               30   3.8  
gi|118498337 HECT domain containing 1 [Homo sapiens]                   30   3.8  
gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens]             29   6.4  
gi|8922112 carbohydrate sulfotransferase 12 [Homo sapiens]             29   6.4  
gi|10181096 adenylate cyclase 6 isoform a [Homo sapiens]               29   6.4  
gi|10947061 adenylate cyclase 6 isoform b [Homo sapiens]               29   6.4  
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]     29   6.4  
gi|109638743 hypothetical protein LOC83723 [Homo sapiens]              29   6.4  
gi|7019387 G protein-coupled receptor 132 [Homo sapiens]               29   6.4  
gi|23397473 hypothetical protein LOC132228 [Homo sapiens]              29   6.4  
gi|239787821 syncoilin, intermediate filament 1 isoform 2 [Homo ...    29   8.4  
gi|166706887 syncoilin, intermediate filament 1 isoform 1 [Homo ...    29   8.4  
gi|194294519 nuclear receptor subfamily 1, group H, member 3 iso...    29   8.4  
gi|194328806 nuclear receptor subfamily 1, group H, member 3 iso...    29   8.4  
gi|194294517 nuclear receptor subfamily 1, group H, member 3 iso...    29   8.4  
gi|90652857 hypothetical protein LOC84904 [Homo sapiens]               29   8.4  

>gi|58197554 transmembrane protein 201 isoform 2 [Homo sapiens]
          Length = 392

 Score =  816 bits (2109), Expect = 0.0
 Identities = 392/392 (100%), Positives = 392/392 (100%)

Query: 1   MEGVSALLARCPTAGLAGGLGVTACAAAGVLLYRIARRMKPTHTMVNCWFCNQDTLVPYG 60
           MEGVSALLARCPTAGLAGGLGVTACAAAGVLLYRIARRMKPTHTMVNCWFCNQDTLVPYG
Sbjct: 1   MEGVSALLARCPTAGLAGGLGVTACAAAGVLLYRIARRMKPTHTMVNCWFCNQDTLVPYG 60

Query: 61  NRNCWDCPHCEQYNGFQENGDYNKPIPAQYLEHLNHVVSSAPSLRDPSQPQQWVSSQVLL 120
           NRNCWDCPHCEQYNGFQENGDYNKPIPAQYLEHLNHVVSSAPSLRDPSQPQQWVSSQVLL
Sbjct: 61  NRNCWDCPHCEQYNGFQENGDYNKPIPAQYLEHLNHVVSSAPSLRDPSQPQQWVSSQVLL 120

Query: 121 CKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNR 180
           CKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNR
Sbjct: 121 CKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNR 180

Query: 181 QLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLRALAFLACAFLLTTALYGASGHF 240
           QLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLRALAFLACAFLLTTALYGASGHF
Sbjct: 181 QLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLRALAFLACAFLLTTALYGASGHF 240

Query: 241 APGTTVPLALPPGGNGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSHQTGV 300
           APGTTVPLALPPGGNGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSHQTGV
Sbjct: 241 APGTTVPLALPPGGNGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSHQTGV 300

Query: 301 VALGLLTCLLAMLLAGRIRLRRIDAFCTCLWALLLGLHLAEQHLQAASPSWLDTLKFSTT 360
           VALGLLTCLLAMLLAGRIRLRRIDAFCTCLWALLLGLHLAEQHLQAASPSWLDTLKFSTT
Sbjct: 301 VALGLLTCLLAMLLAGRIRLRRIDAFCTCLWALLLGLHLAEQHLQAASPSWLDTLKFSTT 360

Query: 361 SLCCLVGFTAAVATRKATGPRRFRPRRSEKQP 392
           SLCCLVGFTAAVATRKATGPRRFRPRRSEKQP
Sbjct: 361 SLCCLVGFTAAVATRKATGPRRFRPRRSEKQP 392


>gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens]
          Length = 642

 Score =  806 bits (2083), Expect = 0.0
 Identities = 387/387 (100%), Positives = 387/387 (100%)

Query: 1   MEGVSALLARCPTAGLAGGLGVTACAAAGVLLYRIARRMKPTHTMVNCWFCNQDTLVPYG 60
           MEGVSALLARCPTAGLAGGLGVTACAAAGVLLYRIARRMKPTHTMVNCWFCNQDTLVPYG
Sbjct: 1   MEGVSALLARCPTAGLAGGLGVTACAAAGVLLYRIARRMKPTHTMVNCWFCNQDTLVPYG 60

Query: 61  NRNCWDCPHCEQYNGFQENGDYNKPIPAQYLEHLNHVVSSAPSLRDPSQPQQWVSSQVLL 120
           NRNCWDCPHCEQYNGFQENGDYNKPIPAQYLEHLNHVVSSAPSLRDPSQPQQWVSSQVLL
Sbjct: 61  NRNCWDCPHCEQYNGFQENGDYNKPIPAQYLEHLNHVVSSAPSLRDPSQPQQWVSSQVLL 120

Query: 121 CKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNR 180
           CKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNR
Sbjct: 121 CKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNR 180

Query: 181 QLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLRALAFLACAFLLTTALYGASGHF 240
           QLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLRALAFLACAFLLTTALYGASGHF
Sbjct: 181 QLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLRALAFLACAFLLTTALYGASGHF 240

Query: 241 APGTTVPLALPPGGNGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSHQTGV 300
           APGTTVPLALPPGGNGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSHQTGV
Sbjct: 241 APGTTVPLALPPGGNGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSHQTGV 300

Query: 301 VALGLLTCLLAMLLAGRIRLRRIDAFCTCLWALLLGLHLAEQHLQAASPSWLDTLKFSTT 360
           VALGLLTCLLAMLLAGRIRLRRIDAFCTCLWALLLGLHLAEQHLQAASPSWLDTLKFSTT
Sbjct: 301 VALGLLTCLLAMLLAGRIRLRRIDAFCTCLWALLLGLHLAEQHLQAASPSWLDTLKFSTT 360

Query: 361 SLCCLVGFTAAVATRKATGPRRFRPRR 387
           SLCCLVGFTAAVATRKATGPRRFRPRR
Sbjct: 361 SLCCLVGFTAAVATRKATGPRRFRPRR 387


>gi|41281453 serine/threonine kinase 2 [Homo sapiens]
          Length = 1235

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 131  KIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNRQLRALLLSHQ 190
            KIKQ AA    E+ + +E +  ++ H  QM  L   C+A V    + QN +   L+    
Sbjct: 1104 KIKQFAA--QEEKRQKNERMAQHQKHENQMRDLQLQCEANVRELHQLQNEKCHLLVEHET 1161

Query: 191  FKRREADQTHAQ 202
             K +E D+ H+Q
Sbjct: 1162 QKLKELDEEHSQ 1173


>gi|9955968 ATP-binding cassette, sub-family B (MDR/TAP), member 9
           isoform 2 [Homo sapiens]
          Length = 723

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 132 IKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYI 175
           +K + +FA  EE     E EVY   L+Q+YKL R   AA  YY+
Sbjct: 375 MKTVRSFANEEE-----EAEVYLRKLQQVYKLNRKEAAAYMYYV 413


>gi|9955966 ATP-binding cassette, sub-family B (MDR/TAP), member 9
           isoform 1 [Homo sapiens]
          Length = 766

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 132 IKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYI 175
           +K + +FA  EE     E EVY   L+Q+YKL R   AA  YY+
Sbjct: 375 MKTVRSFANEEE-----EAEVYLRKLQQVYKLNRKEAAAYMYYV 413


>gi|45243524 ATP-binding cassette, sub-family B (MDR/TAP), member 9
           isoform 1 [Homo sapiens]
          Length = 766

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 132 IKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYI 175
           +K + +FA  EE     E EVY   L+Q+YKL R   AA  YY+
Sbjct: 375 MKTVRSFANEEE-----EAEVYLRKLQQVYKLNRKEAAAYMYYV 413


>gi|45439359 triple functional domain (PTPRF interacting) [Homo
           sapiens]
          Length = 3097

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 119 LLCKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEY---YI 175
           LLC R +    T+++ L  F   ++   D   E +R HLEQ  +L R  QA V+    +I
Sbjct: 866 LLCDR-DVDMATRVQDLLEFLHEKQQELDLAAEQHRKHLEQCVQL-RHLQAEVKQVLGWI 923

Query: 176 KHQNRQLRA-LLLSHQFKRREADQTHAQNFSSAVKSPVQVIL 216
           ++    L A L+ +   +  E  Q   + F  A++   Q  L
Sbjct: 924 RNGESMLNAGLITASSLQEAEQLQREHEQFQHAIEKTHQSAL 965


>gi|126362971 serine/threonine kinase 10 [Homo sapiens]
          Length = 968

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 128 QTTKIKQLAAFAPREEGRY-DEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNRQLRALL 186
           Q  KIKQ   F+ +EE R   E ++  + H  QM  +   C++ +    + QN +   L+
Sbjct: 836 QREKIKQ---FSQQEEKRQKSERLQQQQKHENQMRDMLAQCESNMSELQQLQNEKCHLLV 892

Query: 187 LSHQFKRREADQTHAQN 203
                K +  D++H QN
Sbjct: 893 EHETQKLKALDESHNQN 909


>gi|4507923 WNT1 inducible signaling pathway protein 2 precursor
           [Homo sapiens]
          Length = 250

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 26/102 (25%)

Query: 32  LYRIARRMKPTHTMVNCW----------FCNQDTLVPYGNRNCWDCPH----------CE 71
           LYR     +P H  + C            C++D  +P      WDCPH          C 
Sbjct: 106 LYREGETFQP-HCSIRCRCEDGGFTCVPLCSEDVRLP-----SWDCPHPRRVEVLGKCCP 159

Query: 72  QYNGFQENGDYNKPIPAQYLEHLNHVVSSAPSLRDPSQPQQW 113
           ++   Q  G   +P+PAQ  +    V S  P +  P     W
Sbjct: 160 EWVCGQGGGLGTQPLPAQGPQFSGLVSSLPPGVPCPEWSTAW 201


>gi|101943240 general transcription factor IIIC, polypeptide 1,
           alpha 220kDa [Homo sapiens]
          Length = 2109

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 118 VLLCKRCNHHQTT-KIKQLAAFAPREEGRYDEEV------EVYRHHLEQMYKLCRPCQAA 170
           V+L  R NH +T  K+++      R   R  + +      +V    L++++  C PC+  
Sbjct: 264 VMLSTRTNHIETLGKLREELGLCERTFKRLYQYMLNAGLAKVVSLRLQEIHPECGPCKTK 323

Query: 171 VEYYIKHQNRQLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLR 218
                K  +  +R L L  +FKR + D    +   S    PV ++  R
Sbjct: 324 -----KGTDVMVRCLKLLKEFKRNDHDDDEDEEVISKTVPPVDIVFER 366


>gi|40354197 THAP domain containing 11 [Homo sapiens]
          Length = 314

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 24/90 (26%), Positives = 35/90 (38%)

Query: 165 RPCQAAVEYYIKHQNRQLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLRALAFLA 224
           RP  AA     + Q +Q +      Q ++++  Q   Q  SS   S  Q   L+     A
Sbjct: 93  RPAGAAAARRRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSPSASTAQTAQLQPNLVSA 152

Query: 225 CAFLLTTALYGASGHFAPGTTVPLALPPGG 254
            A +L T         APG+  P  + P G
Sbjct: 153 SAAVLLTLQATVDSSQAPGSVQPAPITPTG 182


>gi|4758024 coilin [Homo sapiens]
          Length = 576

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/70 (27%), Positives = 29/70 (41%)

Query: 199 THAQNFSSAVKSPVQVILLRALAFLACAFLLTTALYGASGHFAPGTTVPLALPPGGNGSA 258
           T + +  S+ +S  Q ++  +    A  FL T  L+   G   PG +   A   G   S 
Sbjct: 312 TTSSSSDSSAESDDQCLMSSSTPECAAGFLKTVGLFAGRGRPGPGLSSQTAGAAGWRRSG 371

Query: 259 TPDNGTTPGA 268
           +   G  PGA
Sbjct: 372 SNGGGQAPGA 381


>gi|110611172 amnionless protein precursor [Homo sapiens]
          Length = 453

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 273 QLLGLLPEHMAEKLCEAWAFGQSHQTGVVALGLLTCLLAMLL-------AGRIRLRRIDA 325
           + LG+L   M E     W    +   G VA  +L  LL +L+       AGR+R RR +A
Sbjct: 337 EALGVLEATMRESGAHVWGSSAAGLAGGVAAAVLLALLVLLVAPPLLRRAGRLRWRRHEA 396


>gi|118498337 HECT domain containing 1 [Homo sapiens]
          Length = 2610

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 34   RIARRMKPTHTMVNCWFCNQDTLVPYGNRNCWDCPHCEQYNGFQE 78
            ++ R  +PT+T++     + D     G   CW   H EQY G  E
Sbjct: 1863 KLRRIWEPTYTIMYREMKDSDKEKENGKMGCWSIEHVEQYLGTDE 1907


>gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens]
          Length = 189

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 209 KSPVQVILLRALAFLACAFLLTTALYGASGHFAPGTTVPLALPPGGNGSATPDNGTTP 266
           K+P    L RA A  A A   TTA   A+    P +  P   PP  +G+A P N T P
Sbjct: 131 KTPAPARLGRAAATAATA---TTA--AAAPQCGPASAAPPPSPPPRSGTAPPANRTAP 183


>gi|8922112 carbohydrate sulfotransferase 12 [Homo sapiens]
          Length = 414

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 146 YDEEVEVYRHHLEQMYKLCRPCQAAVEY 173
           + E++  +  H  Q+Y+LC PCQ   ++
Sbjct: 311 HTEKLAPFNEHWRQVYRLCHPCQIDYDF 338


>gi|10181096 adenylate cyclase 6 isoform a [Homo sapiens]
          Length = 1168

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 253 GGNGSATPDNGTTPGAEGWRQLLGLLPEHM-----AEKLCEAWAFGQSHQTGVVALGLLT 307
           GG     PD     G   WR+L+ +           E+L + + F  +  +  + + +L 
Sbjct: 101 GGTAEVAPDAVPRSGRSCWRRLVQVFQSKQFRSAKLERLYQRYFFQMNQSSLTLLMAVLV 160

Query: 308 CLLAMLLAGRIRLRRID----AFCTCLWALLLGL 337
            L A+LLA      R      A   C  AL +GL
Sbjct: 161 LLTAVLLAFHAAPARPQPAYVALLACAAALFVGL 194


>gi|10947061 adenylate cyclase 6 isoform b [Homo sapiens]
          Length = 1115

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 253 GGNGSATPDNGTTPGAEGWRQLLGLLPEHM-----AEKLCEAWAFGQSHQTGVVALGLLT 307
           GG     PD     G   WR+L+ +           E+L + + F  +  +  + + +L 
Sbjct: 101 GGTAEVAPDAVPRSGRSCWRRLVQVFQSKQFRSAKLERLYQRYFFQMNQSSLTLLMAVLV 160

Query: 308 CLLAMLLAGRIRLRRID----AFCTCLWALLLGL 337
            L A+LLA      R      A   C  AL +GL
Sbjct: 161 LLTAVLLAFHAAPARPQPAYVALLACAAALFVGL 194


>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
          Length = 2230

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 128 QTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAV---EYYIKHQNRQLRA 184
           QT K+KQ        E + DE+     HH +Q+  + +  + ++   E  +K Q  QL  
Sbjct: 713 QTDKMKQ------ELEAKMDEQKN---HHQQQVDSIIKEHEVSIQRTEKALKDQINQLE- 762

Query: 185 LLLSHQFKRREADQTHAQNFSSAVK 209
           LLL  + K  +  Q H +N  + +K
Sbjct: 763 LLLKERDKHLKEHQAHVENLEADIK 787


>gi|109638743 hypothetical protein LOC83723 [Homo sapiens]
          Length = 274

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 217 LRALAFLACAFLLTTALYGASGHFA--PGTTVPLALP 251
           L  L+FL C  LL   LY A G  A  P   VPLA+P
Sbjct: 195 LMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIP 231


>gi|7019387 G protein-coupled receptor 132 [Homo sapiens]
          Length = 380

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 37/165 (22%)

Query: 247 PLALPPGGNGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSH------QTGV 300
           P+ L  G NG+ATP   T P A      LGL     + K C   +F +S        + V
Sbjct: 3   PMLLKNGYNGNATPVTTTAPWAS-----LGL-----SAKTCNNVSFEESRIVLVVVYSAV 52

Query: 301 VALGL----LTCLLAMLLAGRIRLRRIDAFCTCLWALLLG-------LHLAEQH------ 343
             LG+    LT  LA+L   +  +  +   C  L  LL         +++  QH      
Sbjct: 53  CTLGVPANCLTAWLALLQVLQGNVLAVYLLCLALCELLYTGTLPLWVIYIRNQHRWTLGL 112

Query: 344 --LQAASPSWLDTLKFSTTSLCCLV--GFTAAVATRKATGPRRFR 384
              +  +  +   +  S   LCC+    F A V   ++ G RR R
Sbjct: 113 LACKVTAYIFFCNIYVSILFLCCISCDRFVAVVYALESRGRRRRR 157


>gi|23397473 hypothetical protein LOC132228 [Homo sapiens]
          Length = 164

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 255 NGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSHQTGVVALGLLTCLLAMLL 314
           +G+ T     T  A  W +LLG+LP  +  +   +  + +     ++AL +LTCL+  LL
Sbjct: 56  SGAGTLRPYLTEEARPWDELLGVLPPSLCAQAGCSPVYRRGGFLLLLALLVLTCLVLALL 115

Query: 315 A 315
           A
Sbjct: 116 A 116


>gi|239787821 syncoilin, intermediate filament 1 isoform 2 [Homo
           sapiens]
          Length = 476

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 94  LNHVVSSAPSLRDPSQPQQWVSSQVLLCKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVY 153
           L    +    +++  +P Q  + Q+ L  R    Q   ++Q          + DEEV+ Y
Sbjct: 361 LQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQ----------KRDEEVQQY 410

Query: 154 RHHLEQMYKLCRPCQAAVEYYIKHQNRQLRALLLS 188
           R  LE+M +  R  +  V+   + +N+++  L LS
Sbjct: 411 REQLEEMEERQRQLRNGVQLQ-QQKNKEMEQLRLS 444


>gi|166706887 syncoilin, intermediate filament 1 isoform 1 [Homo
           sapiens]
          Length = 482

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 94  LNHVVSSAPSLRDPSQPQQWVSSQVLLCKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVY 153
           L    +    +++  +P Q  + Q+ L  R    Q   ++Q          + DEEV+ Y
Sbjct: 361 LQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQ----------KRDEEVQQY 410

Query: 154 RHHLEQMYKLCRPCQAAVEYYIKHQNRQLRALLLS 188
           R  LE+M +  R  +  V+   + +N+++  L LS
Sbjct: 411 REQLEEMEERQRQLRNGVQLQ-QQKNKEMEQLRLS 444


>gi|194294519 nuclear receptor subfamily 1, group H, member 3
           isoform c [Homo sapiens]
          Length = 402

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 118 VLLCKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKH 177
           VL C+ C       + + A +     G    +  + R   E   + CR      E  +  
Sbjct: 67  VLSCEGCKGFFRRSVIKGAHYICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSE 126

Query: 178 QNRQLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVI 215
           +  +L+ L      KR+E +Q HA +      SP Q++
Sbjct: 127 EQIRLKKL------KRQEEEQAHATSLPPRASSPPQIL 158


>gi|194328806 nuclear receptor subfamily 1, group H, member 3
           isoform b [Homo sapiens]
          Length = 387

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 118 VLLCKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKH 177
           VL C+ C       + + A +     G    +  + R   E   + CR      E  +  
Sbjct: 112 VLSCEGCKGFFRRSVIKGAHYICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSE 171

Query: 178 QNRQLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVI 215
           +  +L+ L      KR+E +Q HA +      SP Q++
Sbjct: 172 EQIRLKKL------KRQEEEQAHATSLPPRASSPPQIL 203


>gi|194294517 nuclear receptor subfamily 1, group H, member 3
           isoform a [Homo sapiens]
          Length = 447

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 118 VLLCKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKH 177
           VL C+ C       + + A +     G    +  + R   E   + CR      E  +  
Sbjct: 112 VLSCEGCKGFFRRSVIKGAHYICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSE 171

Query: 178 QNRQLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVI 215
           +  +L+ L      KR+E +Q HA +      SP Q++
Sbjct: 172 EQIRLKKL------KRQEEEQAHATSLPPRASSPPQIL 203


>gi|90652857 hypothetical protein LOC84904 [Homo sapiens]
          Length = 335

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 20  LGVTACAAAGVLLYRIARRMKPTHTMVNCW---FCNQDTLVPYGNRNCWD------CPHC 70
           LG+ A    G+L  +   R      +   W   +     L+PY    CW       C H 
Sbjct: 41  LGLVATYFLGILKAKGTLRPPERQALFGSWELIYGASQELLPYLEGGCWGQGLEGFCRHL 100

Query: 71  EQYNGFQENGD 81
           E YN F  N +
Sbjct: 101 ELYNQFAANSE 111


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,727,304
Number of Sequences: 37866
Number of extensions: 791859
Number of successful extensions: 3229
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3208
Number of HSP's gapped (non-prelim): 40
length of query: 392
length of database: 18,247,518
effective HSP length: 104
effective length of query: 288
effective length of database: 14,309,454
effective search space: 4121122752
effective search space used: 4121122752
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.