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Search of human proteins with 5803163
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5803163 RAB40B, member RAS oncogene family [Homo sapiens]
(278 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5803163 RAB40B, member RAS oncogene family [Homo sapiens] 564 e-161
gi|73611940 RAB40A, member RAS oncogene family-like [Homo sapiens] 496 e-140
gi|56550077 RAB40A, member RAS oncogene family [Homo sapiens] 486 e-138
gi|46195789 RAB40C, member RAS oncogene family [Homo sapiens] 469 e-132
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 152 3e-37
gi|16933567 mel transforming oncogene [Homo sapiens] 150 9e-37
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 149 3e-36
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 149 3e-36
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 149 3e-36
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 147 8e-36
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 147 1e-35
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 143 2e-34
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 140 2e-33
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 137 8e-33
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 137 1e-32
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 136 2e-32
gi|50234889 RAB43 protein [Homo sapiens] 133 2e-31
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 127 1e-29
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens] 125 3e-29
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 124 7e-29
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 124 9e-29
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 124 1e-28
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 122 3e-28
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 120 2e-27
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 120 2e-27
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 117 1e-26
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 117 1e-26
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 117 1e-26
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 116 2e-26
gi|34485711 Ras-related protein Rab-27A [Homo sapiens] 115 3e-26
>gi|5803163 RAB40B, member RAS oncogene family [Homo sapiens]
Length = 278
Score = 564 bits (1453), Expect = e-161
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG 60
MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG
Sbjct: 1 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG 60
Query: 61 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVP 120
RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVP
Sbjct: 61 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVP 120
Query: 121 KILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGM 180
KILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGM
Sbjct: 121 KILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGM 180
Query: 181 DRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGGS 240
DRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGGS
Sbjct: 181 DRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGGS 240
Query: 241 YSLTTSSTHKRSSLRKVKLVRPPQSPPKNCTRNSCKIS 278
YSLTTSSTHKRSSLRKVKLVRPPQSPPKNCTRNSCKIS
Sbjct: 241 YSLTTSSTHKRSSLRKVKLVRPPQSPPKNCTRNSCKIS 278
>gi|73611940 RAB40A, member RAS oncogene family-like [Homo sapiens]
Length = 278
Score = 496 bits (1276), Expect = e-140
Identities = 247/278 (88%), Positives = 258/278 (92%)
Query: 1 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG 60
MSA GSP +AYDFLLKFLLVGD DVGK EIL SLQDG AESPY H GIDYKTTTILLDG
Sbjct: 1 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYSHLGGIDYKTTTILLDG 60
Query: 61 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVP 120
+RVKL+LWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF+G+DRWIK+I+EHAPGVP
Sbjct: 61 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP 120
Query: 121 KILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGM 180
KILVGNRLHLAFKRQVP EQAQAYAERLGVTFFEVSPLCNFNI ESFTELARIVLLRH +
Sbjct: 121 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRL 180
Query: 181 DRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGGS 240
+ L RPSKVLSLQDLCCR +VSCTPVHLVDKLPLPIALRSHLKSFSMA GLNARMM G S
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIALRSHLKSFSMAKGLNARMMRGLS 240
Query: 241 YSLTTSSTHKRSSLRKVKLVRPPQSPPKNCTRNSCKIS 278
YSLTTSSTHKRSSL KVK+V PPQSPPKNCTRNSCKIS
Sbjct: 241 YSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCKIS 278
>gi|56550077 RAB40A, member RAS oncogene family [Homo sapiens]
Length = 277
Score = 486 bits (1252), Expect = e-138
Identities = 245/278 (88%), Positives = 256/278 (92%), Gaps = 1/278 (0%)
Query: 1 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG 60
MSA GSP +AYDFLLKFLLVGD DVGK EIL SLQDGAAESPY H GIDYKTTTILLDG
Sbjct: 1 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG 60
Query: 61 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVP 120
+RVKL+LWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF+G+DRWIK+I+EHAPGVP
Sbjct: 61 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP 120
Query: 121 KILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGM 180
KILVGNRLHLAFKRQVP EQAQAYAERLGVTFFEVSPLCNFNI ESFTELARIVLLRH M
Sbjct: 121 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRM 180
Query: 181 DRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGGS 240
+ L RPSKVLSLQDLCCR +VSCTPVHLVDKLPLP LRSHLKSFSMA GLNARMM G S
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS 240
Query: 241 YSLTTSSTHKRSSLRKVKLVRPPQSPPKNCTRNSCKIS 278
YSLTTSSTHK SSL KV++V PPQSPPKNCTRNSCKIS
Sbjct: 241 YSLTTSSTHK-SSLCKVEIVCPPQSPPKNCTRNSCKIS 277
>gi|46195789 RAB40C, member RAS oncogene family [Homo sapiens]
Length = 281
Score = 469 bits (1206), Expect = e-132
Identities = 220/281 (78%), Positives = 257/281 (91%), Gaps = 3/281 (1%)
Query: 1 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG 60
M + GSPV++YD+LLKFLLVGDSDVGKGEIL SLQDGAAESPY + GIDYKTTTILLDG
Sbjct: 1 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG 60
Query: 61 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVP 120
RRV+L+LWDTSGQGRFCTIFRSYSRGAQG++LVYDI NRWSFDGIDRWIKEIDEHAPGVP
Sbjct: 61 RRVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPGVP 120
Query: 121 KILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGM 180
+ILVGNRLHLAFKRQVPTEQA+AYAE+ +TFFEVSPLCNFN+ ESFTEL+RIVL+RHGM
Sbjct: 121 RILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGM 180
Query: 181 DRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGGS 240
+++WRP++V SLQDLCCRA+VSCTPVHL+DKLPLP+ ++SHLKSFSMANG+NA MMHG S
Sbjct: 181 EKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGRS 240
Query: 241 YSLTTSS---THKRSSLRKVKLVRPPQSPPKNCTRNSCKIS 278
YSL + + K +SL++ K +RPPQSPP+NC+R++CKIS
Sbjct: 241 YSLASGAGGGGSKGNSLKRSKSIRPPQSPPQNCSRSNCKIS 281
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 152 bits (384), Expect = 3e-37
Identities = 77/172 (44%), Positives = 111/172 (64%), Gaps = 1/172 (0%)
Query: 9 RAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLW 68
+AYD L K LL+GDS VGK ++ + + Y GID+K T+ ++G+++KLQ+W
Sbjct: 3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVW 62
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNR 127
DT+GQ RF TI +Y RGA G+ILVYDI + SF+ I W+K I E+A GV ++L+GN+
Sbjct: 63 DTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNK 122
Query: 128 LHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHG 179
+ KR+V EQA A G+ FFE S + N+ E+F+ LAR +LL+ G
Sbjct: 123 CDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG 174
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 150 bits (380), Expect = 9e-37
Identities = 78/165 (47%), Positives = 104/165 (63%), Gaps = 1/165 (0%)
Query: 9 RAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLW 68
+ YD+L K LL+GDS VGK +L + A S + GID+K TI LDG+R+KLQ+W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPG-VPKILVGNR 127
DT+GQ RF TI +Y RGA G++LVYDI N SFD I WI+ I+EHA V K+++GN+
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 128 LHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELAR 172
+ KRQV E+ + A G+ F E S N N+ +F LAR
Sbjct: 123 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 149 bits (375), Expect = 3e-36
Identities = 76/172 (44%), Positives = 109/172 (63%), Gaps = 1/172 (0%)
Query: 9 RAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLW 68
+AYD L K LL+GDS VGK ++ + + Y GID+K T+ ++G+++KLQ+W
Sbjct: 127 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVW 186
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNR 127
DT+GQ RF TI +Y RGA G+IL YDI + SF+ I W+K I E+A GV +L+GN+
Sbjct: 187 DTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNK 246
Query: 128 LHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHG 179
+ KR+V EQA A G+ FFE S + N+ E+F+ LAR +LL+ G
Sbjct: 247 CDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG 298
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 149 bits (375), Expect = 3e-36
Identities = 76/172 (44%), Positives = 109/172 (63%), Gaps = 1/172 (0%)
Query: 9 RAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLW 68
+AYD L K LL+GDS VGK ++ + + Y GID+K T+ ++G+++KLQ+W
Sbjct: 127 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVW 186
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNR 127
DT+GQ RF TI +Y RGA G+IL YDI + SF+ I W+K I E+A GV +L+GN+
Sbjct: 187 DTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNK 246
Query: 128 LHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHG 179
+ KR+V EQA A G+ FFE S + N+ E+F+ LAR +LL+ G
Sbjct: 247 CDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG 298
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 149 bits (375), Expect = 3e-36
Identities = 76/172 (44%), Positives = 109/172 (63%), Gaps = 1/172 (0%)
Query: 9 RAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLW 68
+AYD L K LL+GDS VGK ++ + + Y GID+K T+ ++G+++KLQ+W
Sbjct: 127 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVW 186
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNR 127
DT+GQ RF TI +Y RGA G+IL YDI + SF+ I W+K I E+A GV +L+GN+
Sbjct: 187 DTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNK 246
Query: 128 LHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHG 179
+ KR+V EQA A G+ FFE S + N+ E+F+ LAR +LL+ G
Sbjct: 247 CDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG 298
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 147 bits (372), Expect = 8e-36
Identities = 75/170 (44%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Query: 9 RAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLW 68
+ YD+L K LL+GDS VGK +L + A + + GID+K TI LDG+++KLQ+W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPG-VPKILVGNR 127
DT+GQ RF TI +Y RGA G++LVYDI N SFD I WI+ I+EHA V ++++GN+
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
Query: 128 LHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLR 177
+ KRQV E+ + A G+ F E S + N+ E+F LAR ++ +
Sbjct: 123 CDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTK 172
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 147 bits (371), Expect = 1e-35
Identities = 76/168 (45%), Positives = 104/168 (61%), Gaps = 1/168 (0%)
Query: 9 RAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLW 68
+ YD L K LL+GDS VGK +L D A + + GID+K T+ L G+++KLQ+W
Sbjct: 4 KTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIW 63
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNR 127
DT+GQ RF TI SY RGA G++LVYDI N SF+ I +W++ IDEHA V ++L+GN+
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNK 123
Query: 128 LHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVL 175
+ KR VP + A G+ FFE S N NI ++F LA +L
Sbjct: 124 CDMDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAEDIL 171
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 143 bits (360), Expect = 2e-34
Identities = 74/170 (43%), Positives = 105/170 (61%), Gaps = 1/170 (0%)
Query: 11 YDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWDT 70
YD+L K LL+GDS VGK +L D Y G+D+K TI LDG+ +KLQ+WDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLH 129
+GQ RF TI SY RGA G+I+VYD+ ++ SF+ + +W++EID +A V K+LVGN+
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
Query: 130 LAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHG 179
L K+ V A+ +A+ LG+ F E S N+ +SF +A + R G
Sbjct: 128 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 177
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 140 bits (352), Expect = 2e-33
Identities = 72/170 (42%), Positives = 104/170 (61%), Gaps = 1/170 (0%)
Query: 11 YDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWDT 70
YD+L K LL+GDS VGK +L D Y G+D+K TI LDG+ +KLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLH 129
+GQ RF TI SY RGA G+I+VYD+ ++ S+ + +W++EID +A V K+LVGN+
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 130 LAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHG 179
L K+ V A+ +A+ LG+ F E S N+ ++F +A + R G
Sbjct: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 174
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 137 bits (346), Expect = 8e-33
Identities = 69/167 (41%), Positives = 100/167 (59%)
Query: 9 RAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLW 68
R YD L K L++GDS VGK +L D Y G+D+K T+ ++G +VKLQ+W
Sbjct: 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 62
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVPKILVGNRL 128
DT+GQ RF TI +Y RG GVI+VYD+ + SF + RW+ EI+++ V +ILVGN+
Sbjct: 63 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKN 122
Query: 129 HLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVL 175
++ V TE A +A ++G+ FE S N N+ E F + +VL
Sbjct: 123 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL 169
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 137 bits (344), Expect = 1e-32
Identities = 71/184 (38%), Positives = 113/184 (61%), Gaps = 5/184 (2%)
Query: 4 LGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRV 63
+G+ YD+L K +L+GDS VGK +L+ G+++ T +I +DG+ +
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 64 KLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKI 122
K Q+WDT+GQ R+ I +Y RGA G +LVYDIA +++ ++RW+KE+ +HA + +
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 123 LVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESF----TELARIVLLRH 178
LVGN+ L R VPT++A+A+AE+ G++F E S L + N+ +F TE+ RIV +
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQ 180
Query: 179 GMDR 182
DR
Sbjct: 181 MSDR 184
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 136 bits (343), Expect = 2e-32
Identities = 71/184 (38%), Positives = 113/184 (61%), Gaps = 5/184 (2%)
Query: 4 LGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRV 63
+G+ YD+L K +L+GDS VGK +L+ G+++ T +I +DG+ +
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 64 KLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKI 122
K Q+WDT+GQ R+ I +Y RGA G +LVYDIA +++ ++RW+KE+ +HA + +
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 123 LVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESF----TELARIVLLRH 178
LVGN+ L R VPT++A+A+AE+ ++F E S L + N+ E+F TE+ RIV +
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 180
Query: 179 GMDR 182
DR
Sbjct: 181 IADR 184
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 133 bits (334), Expect = 2e-31
Identities = 70/177 (39%), Positives = 106/177 (59%), Gaps = 2/177 (1%)
Query: 5 GSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVK 64
G P YDFL K +LVGD+ VGK ++ + GA G G+D+ T+ + G+RVK
Sbjct: 9 GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVK 68
Query: 65 LQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKIL 123
LQ+WDT+GQ RF TI +SY R A G IL YDI R SF + WI+++ ++A + ++L
Sbjct: 69 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 128
Query: 124 VGNRLHLAFKRQVPTEQAQAYAERLGV-TFFEVSPLCNFNITESFTELARIVLLRHG 179
+GN+ L+ R+V +AQ+ AE + E S + N+ E+F +A +++RHG
Sbjct: 129 IGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHG 185
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 127 bits (319), Expect = 1e-29
Identities = 64/165 (38%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Query: 11 YDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWDT 70
+D++ K L++G+S VGK L D + S + GID+K T+ + +R+KLQ+WDT
Sbjct: 27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDT 86
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLH 129
+GQ R+ TI +Y RGA G IL+YDI N SF+ + W +I ++ ILVGN+
Sbjct: 87 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 146
Query: 130 LAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIV 174
+ +R + TE+ Q E+LG FFE S N N+ ++F L I+
Sbjct: 147 MEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDII 191
>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 125 bits (315), Expect = 3e-29
Identities = 65/161 (40%), Positives = 94/161 (58%), Gaps = 1/161 (0%)
Query: 11 YDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWDT 70
+D++ K L++G+S VGK L D + GID+K T+ +RVKLQ+WDT
Sbjct: 19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 78
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLH 129
+GQ R+ TI +Y RGA G IL+YDI N SF+ + W +I ++ ILVGN+
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 138
Query: 130 LAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTEL 170
+ +R VPTE+ Q AE+LG FFE S N ++ ++F L
Sbjct: 139 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 179
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 124 bits (312), Expect = 7e-29
Identities = 68/191 (35%), Positives = 112/191 (58%), Gaps = 4/191 (2%)
Query: 7 PVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQ 66
P R DF L+ +++G VGK ++ D G+D+K T+ L G++++LQ
Sbjct: 35 PPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 94
Query: 67 LWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVG 125
+WDT+GQ RF +I +Y R A+G+ILVYDI + +FD + +W+K ID++A +LVG
Sbjct: 95 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 154
Query: 126 NRLHLAFKRQVPTEQAQAYAERL-GVTFFEVSPLCNFNITESFTELARIVLLRHGMDRLW 184
N+L R++ +Q + +A+++ G+ F E S NFN+ E F +L +L + +D L
Sbjct: 155 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILR 214
Query: 185 R--PSKVLSLQ 193
+ +LSLQ
Sbjct: 215 NELSNSILSLQ 225
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 124 bits (311), Expect = 9e-29
Identities = 67/172 (38%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 3 ALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGA-AESPYGHPAGIDYKTTTILLDGR 61
+LG V YD K +LVGDS VGK +L +DGA + GID++ + +DG
Sbjct: 52 SLGGGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGV 111
Query: 62 RVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAP-GVP 120
+VKLQ+WDT+GQ RF ++ +Y R A ++L+YD+ N+ SFD I W+ EI E+A V
Sbjct: 112 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA 171
Query: 121 KILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELAR 172
+L+GN++ A +R V E + A+ G+ F E S N+ +FT +A+
Sbjct: 172 LMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 223
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 124 bits (310), Expect = 1e-28
Identities = 64/165 (38%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Query: 11 YDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWDT 70
+D++ K LL+G+S VGK L D + + GID+K T+ +R+KLQ+WDT
Sbjct: 19 FDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDT 78
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLH 129
+GQ R+ TI +Y RGA G +L+YDIAN+ SF + W +I ++ ILVGN+
Sbjct: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCD 138
Query: 130 LAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIV 174
L +R VP E + A+ LG FFE S N N+ + F L ++
Sbjct: 139 LEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 122 bits (306), Expect = 3e-28
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 1/165 (0%)
Query: 11 YDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWDT 70
+D++ K L++G+S VGK L D + + GID+K TI + +R+KLQ+WDT
Sbjct: 19 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 78
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLH 129
+GQ R+ TI +Y RGA G IL+YDI N SF+ + W +I ++ +LVGN+
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 138
Query: 130 LAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIV 174
+ +R V +E+ + A+ LG FFE S N N+ ++F L ++
Sbjct: 139 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 183
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 120 bits (300), Expect = 2e-27
Identities = 66/172 (38%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 10 AYDFLLKFLLVGDSDVGKGEILASLQDGAAES-PYGHPAGIDYKTTTILLDGRRVKLQLW 68
+YD K +L+GD+ VGK L +DGA S + GID++ + +DG RVKLQ+W
Sbjct: 25 SYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIW 84
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAP-GVPKILVGNR 127
DT+GQ RF ++ +Y R AQ ++L+YDI N+ SFD I W+ EI E+A V +L+GN+
Sbjct: 85 DTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNK 144
Query: 128 LHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHG 179
++ +R + +E + A GV F E S N+ +F +A+ + R G
Sbjct: 145 ADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAG 196
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 120 bits (300), Expect = 2e-27
Identities = 58/164 (35%), Positives = 99/164 (60%), Gaps = 1/164 (0%)
Query: 10 AYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWD 69
AY +L K++++GD+ VGK +L D + + G+++ I +DG+++KLQ+WD
Sbjct: 2 AYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWD 61
Query: 70 TSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNRL 128
T+GQ F +I RSY RGA G +LVYDI R +F+ + W+++ +H+ + +L+GN+
Sbjct: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKS 121
Query: 129 HLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELAR 172
L +R+V E+ +A+A G+ F E S N+ E+F A+
Sbjct: 122 DLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 117 bits (292), Expect = 1e-26
Identities = 56/163 (34%), Positives = 97/163 (59%), Gaps = 1/163 (0%)
Query: 11 YDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWDT 70
Y +L K++++GD+ VGK +L D + + G+++ + +DG+++KLQ+WDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEH-APGVPKILVGNRLH 129
+GQ F +I RSY RGA G +LVYDI R +F+ + W+++ +H + + +L+GN+
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 130 LAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELAR 172
L +R V E+ +A+A G+ F E S N+ E+F A+
Sbjct: 123 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 165
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 117 bits (292), Expect = 1e-26
Identities = 63/172 (36%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 11 YDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWDT 70
+D+L K +L+GDS+VGK ++ + G + G+D+ ++ +DG++VK+Q+WDT
Sbjct: 14 FDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDT 73
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEH-APGVPKILVGNRLH 129
+GQ RF TI +SY R A I+ YD+ R +F+ I WI EI+++ A V +L+GN+
Sbjct: 74 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCD 133
Query: 130 LAFKRQVPTEQAQAYAERLG-VTFFEVSPLCNFNITESFTELARIVLLRHGM 180
L KR V E A AE+ G + E S + NI E F +A+ ++ R+ +
Sbjct: 134 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIARNSL 185
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 117 bits (292), Expect = 1e-26
Identities = 60/166 (36%), Positives = 97/166 (58%), Gaps = 1/166 (0%)
Query: 11 YDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWDT 70
YDFL KFL++G + GK +L + + H G+++ + + + G+ VKLQ+WDT
Sbjct: 5 YDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDT 64
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLH 129
+GQ RF ++ RSY RGA G +LVYDI +R +++ + W+ + A P + IL GN+
Sbjct: 65 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKD 124
Query: 130 LAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVL 175
L +R+V +A +A+ + F E S L N+ E+F + AR +L
Sbjct: 125 LDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 170
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 116 bits (291), Expect = 2e-26
Identities = 60/162 (37%), Positives = 99/162 (61%), Gaps = 1/162 (0%)
Query: 11 YDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWDT 70
YDFL K +L+G++ VGK ++ G G G+D+ T+ ++G +VKLQ+WDT
Sbjct: 6 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 65
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPG-VPKILVGNRLH 129
+GQ RF +I +SY R A +IL YDI SF + W++EI+++A V +LVGN++
Sbjct: 66 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 125
Query: 130 LAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELA 171
LA +R+V ++A+ ++E + + E S + N+ + F +LA
Sbjct: 126 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 167
>gi|34485711 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 115 bits (289), Expect = 3e-26
Identities = 67/196 (34%), Positives = 107/196 (54%), Gaps = 18/196 (9%)
Query: 11 YDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLD----------G 60
YD+L+KFL +GDS VGK +L DG S + GID++ ++ G
Sbjct: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRG 65
Query: 61 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA---- 116
+R+ LQLWDT+GQ RF ++ ++ R A G +L++D+ N SF + WI ++ HA
Sbjct: 66 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCEN 125
Query: 117 PGVPKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLL 176
P + +L GN+ L +R V E+A A AE+ G+ +FE S NI+++ L +++
Sbjct: 126 PDI--VLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMK 183
Query: 177 R--HGMDRLWRPSKVL 190
R +D+ W P V+
Sbjct: 184 RMERCVDKSWIPEGVV 199
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,932,410
Number of Sequences: 37866
Number of extensions: 468407
Number of successful extensions: 1421
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 233
length of query: 278
length of database: 18,247,518
effective HSP length: 101
effective length of query: 177
effective length of database: 14,423,052
effective search space: 2552880204
effective search space used: 2552880204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.