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Search of human proteins with 5729765
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5729765 cell growth regulator with ring finger domain 1
[Homo sapiens]
(332 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5729765 cell growth regulator with ring finger domain 1 [Homo... 684 0.0
gi|14042925 ring finger protein 26 [Homo sapiens] 54 3e-07
gi|214010238 mahogunin, ring finger 1 isoform 4 [Homo sapiens] 50 4e-06
gi|214010236 mahogunin, ring finger 1 isoform 3 [Homo sapiens] 50 4e-06
gi|214010234 mahogunin, ring finger 1 isoform 2 [Homo sapiens] 50 4e-06
gi|44917608 mahogunin, ring finger 1 isoform 1 [Homo sapiens] 50 4e-06
gi|58743365 ring finger protein 157 [Homo sapiens] 49 5e-06
gi|37595539 ring finger protein 34 isoform 1 [Homo sapiens] 49 6e-06
gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens] 49 6e-06
gi|38788243 myosin regulatory light chain interacting protein [H... 48 1e-05
gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo sap... 47 2e-05
gi|62865649 rififylin [Homo sapiens] 45 7e-05
gi|17432433 rififylin [Homo sapiens] 45 7e-05
gi|53729363 leucine rich repeat and sterile alpha motif containi... 45 7e-05
gi|53729361 leucine rich repeat and sterile alpha motif containi... 45 7e-05
gi|53729359 leucine rich repeat and sterile alpha motif containi... 45 7e-05
gi|30348954 mindbomb homolog 1 [Homo sapiens] 44 2e-04
gi|44680139 baculoviral IAP repeat-containing 8 [Homo sapiens] 44 3e-04
gi|217416388 neuralized homolog 1B [Homo sapiens] 43 3e-04
gi|32528299 baculoviral IAP repeat-containing protein 4 [Homo sa... 43 4e-04
gi|171542821 mitochondrial ubiquitin ligase activator of NFKB 1 ... 43 4e-04
gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo sa... 42 6e-04
gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo sap... 42 6e-04
gi|223278368 neuralized-like [Homo sapiens] 41 0.002
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 41 0.002
gi|149408115 unkempt homolog (Drosophila)-like isoform 1 [Homo s... 40 0.002
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 40 0.002
gi|47716512 mex-3 homolog B [Homo sapiens] 40 0.003
gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo sap... 37 0.032
gi|33636758 ring finger protein 146 [Homo sapiens] 36 0.055
>gi|5729765 cell growth regulator with ring finger domain 1 [Homo
sapiens]
Length = 332
Score = 684 bits (1765), Expect = 0.0
Identities = 332/332 (100%), Positives = 332/332 (100%)
Query: 1 MAAVFLVTLYEYSPLFYIAVVFTCFIVTTGLVLGWFGWDVPVILRNSEETQFSTRVFKKQ 60
MAAVFLVTLYEYSPLFYIAVVFTCFIVTTGLVLGWFGWDVPVILRNSEETQFSTRVFKKQ
Sbjct: 1 MAAVFLVTLYEYSPLFYIAVVFTCFIVTTGLVLGWFGWDVPVILRNSEETQFSTRVFKKQ 60
Query: 61 MRQVKNPFGLEITNPSSASITTGITLTTDCLEDSLLTCYWGCSVQKLYEALQKHVYCFRI 120
MRQVKNPFGLEITNPSSASITTGITLTTDCLEDSLLTCYWGCSVQKLYEALQKHVYCFRI
Sbjct: 61 MRQVKNPFGLEITNPSSASITTGITLTTDCLEDSLLTCYWGCSVQKLYEALQKHVYCFRI 120
Query: 121 STPQALEDALYSEYLYQEQYFIKKDSKEEIYCQLPRDTKIEDFGTVPRSRYPLVALLTLA 180
STPQALEDALYSEYLYQEQYFIKKDSKEEIYCQLPRDTKIEDFGTVPRSRYPLVALLTLA
Sbjct: 121 STPQALEDALYSEYLYQEQYFIKKDSKEEIYCQLPRDTKIEDFGTVPRSRYPLVALLTLA 180
Query: 181 DEDDREIYDIISMVSVIHIPDRTYKLSCRILYQYLLLAQGQFHDLKQLFMSANNNFTPSN 240
DEDDREIYDIISMVSVIHIPDRTYKLSCRILYQYLLLAQGQFHDLKQLFMSANNNFTPSN
Sbjct: 181 DEDDREIYDIISMVSVIHIPDRTYKLSCRILYQYLLLAQGQFHDLKQLFMSANNNFTPSN 240
Query: 241 NSSSEEKNTDRSLLEKVGLSESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK 300
NSSSEEKNTDRSLLEKVGLSESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK
Sbjct: 241 NSSSEEKNTDRSLLEKVGLSESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK 300
Query: 301 YFQQCPMCRQFVQESFALCSQKEQDKDKPKTL 332
YFQQCPMCRQFVQESFALCSQKEQDKDKPKTL
Sbjct: 301 YFQQCPMCRQFVQESFALCSQKEQDKDKPKTL 332
>gi|14042925 ring finger protein 26 [Homo sapiens]
Length = 433
Score = 53.5 bits (127), Expect = 3e-07
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 268 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK-------YFQQCPMCRQFVQES 315
+E K CV+CQ+ + +LLPCRH CLC C + Y + CP+CR+ + ++
Sbjct: 374 QEERKKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPLCRRGILQT 428
>gi|214010238 mahogunin, ring finger 1 isoform 4 [Homo sapiens]
Length = 531
Score = 49.7 bits (117), Expect = 4e-06
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 260 SESEVEPSEE----NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCR 309
+ E +PS++ NS +CVVC + + ++LPCRH CLC C + CP+CR
Sbjct: 261 NNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICR 318
>gi|214010236 mahogunin, ring finger 1 isoform 3 [Homo sapiens]
Length = 552
Score = 49.7 bits (117), Expect = 4e-06
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 260 SESEVEPSEE----NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCR 309
+ E +PS++ NS +CVVC + + ++LPCRH CLC C + CP+CR
Sbjct: 260 NNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICR 317
>gi|214010234 mahogunin, ring finger 1 isoform 2 [Homo sapiens]
Length = 555
Score = 49.7 bits (117), Expect = 4e-06
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 260 SESEVEPSEE----NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCR 309
+ E +PS++ NS +CVVC + + ++LPCRH CLC C + CP+CR
Sbjct: 261 NNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICR 318
>gi|44917608 mahogunin, ring finger 1 isoform 1 [Homo sapiens]
Length = 576
Score = 49.7 bits (117), Expect = 4e-06
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 260 SESEVEPSEE----NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCR 309
+ E +PS++ NS +CVVC + + ++LPCRH CLC C + CP+CR
Sbjct: 260 NNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICR 317
>gi|58743365 ring finger protein 157 [Homo sapiens]
Length = 679
Score = 49.3 bits (116), Expect = 5e-06
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 256 KVGLSESEVEPSE--ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCR 309
K +S+V E +NS +CVVC + + ++LPCRH CLC+ C + CP+CR
Sbjct: 257 KYNTQDSKVAEDEVSDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICR 316
>gi|37595539 ring finger protein 34 isoform 1 [Homo sapiens]
Length = 373
Score = 48.9 bits (115), Expect = 6e-06
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 240 NNSSSEEKNTDRSLLEKVGLSESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCV 299
N E + +S E++ L + EE+ C +C + ++ VLL C H C C
Sbjct: 298 NRLYKENEENQKSYGERLQLQD------EEDDSLCRICMDAVIDCVLLECGHMVTCTKCG 351
Query: 300 KYFQQCPMCRQFV 312
K +CP+CRQ+V
Sbjct: 352 KRMSECPICRQYV 364
>gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens]
Length = 372
Score = 48.9 bits (115), Expect = 6e-06
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 240 NNSSSEEKNTDRSLLEKVGLSESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCV 299
N E + +S E++ L + EE+ C +C + ++ VLL C H C C
Sbjct: 297 NRLYKENEENQKSYGERLQLQD------EEDDSLCRICMDAVIDCVLLECGHMVTCTKCG 350
Query: 300 KYFQQCPMCRQFV 312
K +CP+CRQ+V
Sbjct: 351 KRMSECPICRQYV 363
>gi|38788243 myosin regulatory light chain interacting protein [Homo
sapiens]
Length = 445
Score = 47.8 bits (112), Expect = 1e-05
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 232 ANNNFTPSNNS-SSEEKNTDRSLLEKVGLSESEVEPSE----ENSKDCVVCQNGTVNWVL 286
+ NN +PS++ S E + + S E + ++ V + + + C+VC +N
Sbjct: 340 SRNNQSPSHSPLKSSESSMNCSSCEGLSCQQTRVLQEKLRKLKEAMLCMVCCEEEINSTF 399
Query: 287 LPCRHTCLCDGCVKYFQQCPMCRQFVQ 313
PC HT C+ C Q CP+CR V+
Sbjct: 400 CPCGHTVCCESCAAQLQSCPVCRSRVE 426
>gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo
sapiens]
Length = 618
Score = 47.0 bits (110), Expect = 2e-05
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 226 KQLFMSANNNFTPSNNSSSEEKNTDRSLLEKVGLSESEVEPSEENSKDCVVCQNGTVNWV 285
K LF+ N + P+ + S GLS E + + C VC + V+ V
Sbjct: 537 KNLFVDKNMKYIPTEDVS--------------GLSLEEQLRRLQEERTCKVCMDKEVSVV 582
Query: 286 LLPCRHTCLCDGCVKYFQQCPMCRQFVQ 313
+PC H +C C ++CP+CR ++
Sbjct: 583 FIPCGHLVVCQECAPSLRKCPICRGIIK 610
>gi|62865649 rififylin [Homo sapiens]
Length = 363
Score = 45.4 bits (106), Expect = 7e-05
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 266 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFV 312
PS C +C + ++ VLL C H C C K +CP+CRQ+V
Sbjct: 308 PSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYV 354
>gi|17432433 rififylin [Homo sapiens]
Length = 363
Score = 45.4 bits (106), Expect = 7e-05
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 266 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFV 312
PS C +C + ++ VLL C H C C K +CP+CRQ+V
Sbjct: 308 PSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYV 354
>gi|53729363 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 45.4 bits (106), Expect = 7e-05
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 260 SESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE 314
+E EV+ SE CVVC + L C H C C C + + CP+CRQ + +
Sbjct: 666 AELEVQASE-----CVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQ 715
>gi|53729361 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 45.4 bits (106), Expect = 7e-05
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 260 SESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE 314
+E EV+ SE CVVC + L C H C C C + + CP+CRQ + +
Sbjct: 666 AELEVQASE-----CVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQ 715
>gi|53729359 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 45.4 bits (106), Expect = 7e-05
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 260 SESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE 314
+E EV+ SE CVVC + L C H C C C + + CP+CRQ + +
Sbjct: 666 AELEVQASE-----CVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQ 715
>gi|30348954 mindbomb homolog 1 [Homo sapiens]
Length = 1006
Score = 43.9 bits (102), Expect = 2e-04
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 267 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE--SFALCSQKEQ 324
S ++CVVC + + PC H C C+ C ++C CR V+ F +C +
Sbjct: 859 SRTKIEECVVCSDKKAAVLFQPCGHMCACENCANLMKKCVQCRAVVERRVPFIMCCGGKS 918
Query: 325 DKD 327
+D
Sbjct: 919 SED 921
Score = 38.5 bits (88), Expect = 0.008
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 260 SESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQ-----E 314
S S + E ++C+VC + + + PC H C C ++C +C++ VQ E
Sbjct: 805 SPSMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQSRTKIE 864
Query: 315 SFALCSQKE 323
+CS K+
Sbjct: 865 ECVVCSDKK 873
>gi|44680139 baculoviral IAP repeat-containing 8 [Homo sapiens]
Length = 236
Score = 43.5 bits (101), Expect = 3e-04
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 244 SEEKNTDRSLLEKVGLSESEVEPSE-----ENSKDCVVCQNGTVNWVLLPCRHTCLCDGC 298
S +K+T + L + L + E+ P E + K C +C + + V +PC H C C
Sbjct: 155 SAQKDTTENELNQTSL-QREISPEEPLRRLQEEKLCKICMDRHIAVVFIPCGHLVTCKQC 213
Query: 299 VKYFQQCPMC 308
+ +CPMC
Sbjct: 214 AEAVDRCPMC 223
>gi|217416388 neuralized homolog 1B [Homo sapiens]
Length = 555
Score = 43.1 bits (100), Expect = 3e-04
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 230 MSANNNFTPSNNSSSEEKNTDRSLLEKVGLSESEVEPSEENSKDCVVCQNGTVNWVLLPC 289
M+ + N + S + SS L V S EP+ + +C VC +G V+ V+ C
Sbjct: 459 MTFSVNQSSSASESSLVTAPSSPLSPPVSPVFSPPEPAGIKNGECTVCFDGEVDTVIYTC 518
Query: 290 RHTCLCDGCVKYFQQ-----CPMCRQFVQE 314
H CLC C ++ CP+CR+ +++
Sbjct: 519 GHMCLCHSCGLRLKRQARACCPICRRPIKD 548
>gi|32528299 baculoviral IAP repeat-containing protein 4 [Homo
sapiens]
Length = 497
Score = 42.7 bits (99), Expect = 4e-04
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 209 RILYQYLLLAQGQFHDLKQLFMSANNNFTPSNNSSSEEKNTDRSLLEKVGLSESEVEPSE 268
+I+ + + ++ + L+ L N + S +++++ SL +++ E E
Sbjct: 391 KIMEEKIQISGSNYKSLEVLVADLVN----AQKDSMQDESSQTSLQKEISTEEQLRRLQE 446
Query: 269 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMC 308
E K C +C + + V +PC H C C + +CPMC
Sbjct: 447 E--KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMC 484
>gi|171542821 mitochondrial ubiquitin ligase activator of NFKB 1
[Homo sapiens]
Length = 352
Score = 42.7 bits (99), Expect = 4e-04
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 259 LSESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF---QQCPMCRQFV 312
LS ++ E E CVVC + + V L C H C C C + ++CP+CRQ +
Sbjct: 287 LSRAKPEDRESLKSACVVCLSSFKSCVFLECGHVCSCTECYRALPEPKKCPICRQAI 343
>gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo
sapiens]
Length = 604
Score = 42.4 bits (98), Expect = 6e-04
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 269 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQ 313
+ + C VC + V+ V +PC H +C C ++CP+CR ++
Sbjct: 552 QEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIK 596
>gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo
sapiens]
Length = 604
Score = 42.4 bits (98), Expect = 6e-04
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 269 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQ 313
+ + C VC + V+ V +PC H +C C ++CP+CR ++
Sbjct: 552 QEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIK 596
>gi|223278368 neuralized-like [Homo sapiens]
Length = 574
Score = 40.8 bits (94), Expect = 0.002
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 257 VGLSESEVEPS-EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQ-----CPMCRQ 310
V L ES V P + S +C +C V+ V+ C H CLC C ++ CP+CR+
Sbjct: 503 VSLPESPVTPGLGQWSDECTICYEHAVDTVIYTCGHMCLCYACGLRLKKALHACCPICRR 562
Query: 311 FVQE 314
+++
Sbjct: 563 PIKD 566
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 40.8 bits (94), Expect = 0.002
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 258 GLSESEVEPSEENS-----KDCVVCQNGTVNWVLLPCRHTCLCDGCV-----KYFQQCPM 307
G SE+ +P +S ++CVVC G V L+PC H C C K +CP
Sbjct: 579 GASENSRKPPSASSAPALARECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPA 638
Query: 308 CR 309
CR
Sbjct: 639 CR 640
>gi|149408115 unkempt homolog (Drosophila)-like isoform 1 [Homo
sapiens]
Length = 232
Score = 40.4 bits (93), Expect = 0.002
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 271 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCR 309
+K CV C+ VL PC+H LC+ C +CP C+
Sbjct: 188 AKQCVACRERAHGAVLRPCQHHILCEPCAATAPECPYCK 226
>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
Length = 659
Score = 40.4 bits (93), Expect = 0.002
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 248 NTDRSLLEKVGLSESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCV-----KYF 302
N S G S S P DCV+C V L+PC H C C K
Sbjct: 582 NGTNSYSSSNGGSTSSSPPESRRKHDCVICFENEVIAALVPCGHNLFCMECANKICEKRT 641
Query: 303 QQCPMCRQFVQESFALCS 320
CP+C+ V ++ + S
Sbjct: 642 PSCPVCQTAVTQAIQIHS 659
>gi|47716512 mex-3 homolog B [Homo sapiens]
Length = 569
Score = 40.0 bits (92), Expect = 0.003
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 214 YLLLAQGQFHDLKQLFMSANNNFTPSNNSSSEEKNTDRSLLEKVGLSESEVEPSEENSKD 273
Y A G L L S + + S++SSS ++ L K S+D
Sbjct: 471 YAAYANGLGAQLPGLQPSDTSGSSSSSSSSSSSSSSSSGLRRK-------------GSRD 517
Query: 274 CVVCQNGTVNWVLLPCRHTCLCDGCV-----KYFQQCPMCRQFVQESFALCS 320
C VC V L+PC H C C K +CP+C V ++ + S
Sbjct: 518 CSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRIFS 569
>gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo
sapiens]
Length = 298
Score = 36.6 bits (83), Expect = 0.032
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 253 LLEKVGLSESEVEPSE-ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCR 309
+LE G + E + + + C VC + V+ V +PC H +C C Q CP+CR
Sbjct: 230 VLEPPGARDVEAQLRRLQEERTCKVCLDRAVSIVFVPCGH-LVCAECAPGLQLCPICR 286
>gi|33636758 ring finger protein 146 [Homo sapiens]
Length = 358
Score = 35.8 bits (81), Expect = 0.055
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 273 DCVVCQNGTVNWVLLPCRHTCLCDGCVK----YFQQCPMCRQFVQESF 316
+C +C V+ V LPC+H C CVK ++C +CRQ + E F
Sbjct: 35 ECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPEDF 81
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,645,655
Number of Sequences: 37866
Number of extensions: 564368
Number of successful extensions: 1713
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1666
Number of HSP's gapped (non-prelim): 80
length of query: 332
length of database: 18,247,518
effective HSP length: 103
effective length of query: 229
effective length of database: 14,347,320
effective search space: 3285536280
effective search space used: 3285536280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.